mRNA_P-wetherbeei_contig20034.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20034.1.1
Unique NamemRNA_P-wetherbeei_contig20034.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig20034.1.1 vs. uniprot
Match: A0A660SK17_9BACT (Uncharacterized protein n=1 Tax=candidate division WOR-3 bacterium TaxID=2052148 RepID=A0A660SK17_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 2.440e-9
Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:   10 IVGAGVLNAAILALISLTVIGIPVAIYLATQWLYSPQAIVFDGAGWSRARTVARDTVKGDWWHALGIAVL-------VTYAVAVPGPLVGILLVLAGVSIPV 294
            +VGA +L   ++ L+S+T+IGIP A+Y   +WL+ P  I+ +  G   A   + + V+G+WW   GI  L       VTYA  +  P++G+  VL G+++P+
Sbjct:  133 LVGANILYGLVITLLSITIIGIPFALYFFVRWLFLPYLIIVEDTGIGDAFQRSTELVRGNWWRTFGILSLLWFLYFGVTYAFELI-PMIGLFAVLLGIALPI 233
[Close]
BLAST of mRNA_P-wetherbeei_contig20034.1.1 vs. uniprot
Match: A0A6J4U9D0_9CHLR (Uncharacterized protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4U9D0_9CHLR)

HSP 1 Score: 60.1 bits (144), Expect = 5.870e-8
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:   52 ISLTVIGIPVAIYLATQWLYSPQAIVFDGAGWSRARTVARDTVKGDWWHALGIAVLVTYAVAVPGPLVGI-LLVLAGVSIPVAGIVSSAIFIVLYPITIITATLYY 366
            + LTV+G+P+A+YL  +W ++ QA V  GA    A   +    +G WW       L+  A A  GPL+GI L+V+ G+ I +A    + ++    P+ I+ ATL Y
Sbjct:  528 LGLTVVGVPLALYLGVRWAFASQAAVLAGAAGVGALRASFAATRGSWWPTALTLSLLAVAGAALGPLLGIALMVVGGIPIELADGAGALVYAFTQPLAIVGATLLY 633
[Close]
BLAST of mRNA_P-wetherbeei_contig20034.1.1 vs. uniprot
Match: A0A7V9VI14_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VI14_9CHLR)

HSP 1 Score: 58.9 bits (141), Expect = 1.490e-7
Identity = 38/112 (33.93%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:   49 LISLTVIGIPVAIYLATQWLYSPQAIVFDGAGWSRARTVARDTVKGDWWHALGIAVLVTYAVAVPGPLVGI-LLVLAGVSIPVAGIVSSAIFIVLYPITIITATLYYLERRA 381
            L  LTVIG+P AI  A +W +  QA+V D A    A   + + V+G WW      + +    A PGP++GI L+V     +     +SS I+ V  P +++ A + Y +R+A
Sbjct:  524 LAQLTVIGLPWAIERAVRWGFVAQAVVLDEAAPGEAPMRSAEAVRGRWWRTAATILALAVIGAAPGPVLGIVLMVTESAGVDFVNTLSSLIYAVALPFSVLGAAVLYRQRQA 635
[Close]
BLAST of mRNA_P-wetherbeei_contig20034.1.1 vs. uniprot
Match: A0A535M9M3_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535M9M3_9CHLR)

HSP 1 Score: 56.6 bits (135), Expect = 7.230e-7
Identity = 43/133 (32.33%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:   16 GAGVLNAAILALISLTVIGIPVAIYLATQWLYSPQAIVFDGAGWSRARTVARDTVKGDWWHALGIAVLVTYAVAVPGPLVGILLVLAGVSIP---------VAGIVSSAIFIVLYPITIITATLYYLERRAAK 387
            GA ++ A ++ L+S+TVIGIPVAI++  +W+    A++ +  G  RA   +   ++G WW   GI +L+   + + G ++G L    G  IP         V  + SS   +V  PI  I  TL Y + R  K
Sbjct:  137 GAAIVYAVVILLLSITVIGIPVAIWIYVRWVLFVPAMLTENLGPIRALGRSWTLLEGKWWRTCGILLLLLLLLYIVGLIIGTLFQFVGALIPGLSQDARLAVNQVGSSLGGVVAAPIQYIAWTLMYFDLRVRK 269
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20034.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A660SK17_9BACT2.440e-935.29Uncharacterized protein n=1 Tax=candidate division... [more]
A0A6J4U9D0_9CHLR5.870e-834.91Uncharacterized protein n=1 Tax=uncultured Thermom... [more]
A0A7V9VI14_9CHLR1.490e-733.93Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
A0A535M9M3_9CHLR7.230e-732.33Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20034contigP-wetherbeei_contig20034:451..837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size387
Hectar predicted targeting categorysignal peptide
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.0565765-CDS-P-wetherbeei_contig20034:450..8371683186189.0565765-CDS-P-wetherbeei_contig20034:450..837Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20034 451..837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20034.1.1prot_P-wetherbeei_contig20034.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20034 451..837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20034.1.1

>prot_P-wetherbeei_contig20034.1.1 ID=prot_P-wetherbeei_contig20034.1.1|Name=mRNA_P-wetherbeei_contig20034.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MPAIVGAGVLNAAILALISLTVIGIPVAIYLATQWLYSPQAIVFDGAGWS
RARTVARDTVKGDWWHALGIAVLVTYAVAVPGPLVGILLVLAGVSIPVAG
IVSSAIFIVLYPITIITATLYYLERRAAK
back to top

mRNA from alignment at P-wetherbeei_contig20034:451..837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20034.1.1 ID=mRNA_P-wetherbeei_contig20034.1.1|Name=mRNA_P-wetherbeei_contig20034.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig20034:451..837+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCCATCGTCGGCGCGGGGGTGCTCAATGCCGCCATCCTGGCGCT
CATCTCGCTGACCGTGATCGGGATTCCGGTGGCGATCTATCTGGCGACGC
AGTGGTTGTACTCGCCGCAGGCGATCGTATTCGACGGCGCCGGCTGGAGC
CGGGCGCGGACGGTCGCGCGGGACACCGTGAAGGGAGACTGGTGGCACGC
GCTCGGCATCGCCGTGCTCGTCACCTACGCCGTGGCCGTGCCGGGGCCCC
TGGTCGGCATCCTGCTGGTGCTGGCGGGGGTCTCCATTCCGGTGGCAGGC
ATCGTGTCGAGCGCGATCTTCATCGTCCTCTACCCGATCACCATCATCAC
CGCCACCCTCTACTACCTTGAACGGCGGGCGGCGAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20034:451..837+

>mRNA_P-wetherbeei_contig20034.1.1 ID=mRNA_P-wetherbeei_contig20034.1.1|Name=mRNA_P-wetherbeei_contig20034.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig20034:451..837+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCCATCGTCGGCGCGGGGGTGCTCAATGCCGCCATCCTGGCGCT
CATCTCGCTGACCGTGATCGGGATTCCGGTGGCGATCTATCTGGCGACGC
AGTGGTTGTACTCGCCGCAGGCGATCGTATTCGACGGCGCCGGCTGGAGC
CGGGCGCGGACGGTCGCGCGGGACACCGTGAAGGGAGACTGGTGGCACGC
GCTCGGCATCGCCGTGCTCGTCACCTACGCCGTGGCCGTGCCGGGGCCCC
TGGTCGGCATCCTGCTGGTGCTGGCGGGGGTCTCCATTCCGGTGGCAGGC
ATCGTGTCGAGCGCGATCTTCATCGTCCTCTACCCGATCACCATCATCAC
CGCCACCCTCTACTACCTTGAACGGCGGGCGGCGAAG
back to top