mRNA_P-wetherbeei_contig2001.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2001.2.1
Unique NamemRNA_P-wetherbeei_contig2001.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2001.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2001contigP-wetherbeei_contig2001:4344..6219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1547
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005220.1
Cds size735
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.504798-UTR-P-wetherbeei_contig2001:4343..46421683186188.504798-UTR-P-wetherbeei_contig2001:4343..4642Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2001 4344..4642 +
1683186188.5442874-UTR-P-wetherbeei_contig2001:5706..62191683186188.5442874-UTR-P-wetherbeei_contig2001:5706..6219Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2001 5707..6219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.5159774-CDS-P-wetherbeei_contig2001:4642..48491683186188.5159774-CDS-P-wetherbeei_contig2001:4642..4849Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2001 4643..4849 +
1683186188.5255167-CDS-P-wetherbeei_contig2001:5011..52331683186188.5255167-CDS-P-wetherbeei_contig2001:5011..5233Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2001 5012..5233 +
1683186188.5352356-CDS-P-wetherbeei_contig2001:5400..57061683186188.5352356-CDS-P-wetherbeei_contig2001:5400..5706Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2001 5401..5706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2001.2.1prot_P-wetherbeei_contig2001.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2001 4643..5706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2001.2.1

>prot_P-wetherbeei_contig2001.2.1 ID=prot_P-wetherbeei_contig2001.2.1|Name=mRNA_P-wetherbeei_contig2001.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=245bp
MIVSRSACSGEYSVDLDPDTELGFSWSFNGDPLMPSSIFAKTTKRVRDPA
LVVSARATYDVPSTVAKLQTSVASEYGKLEGSCDSLGRPGPLRYSNGWEV
NGRHVSVSLVRDLLHGTDGSAKLSADVWPKGPVAEVTLHDDGAASVVARH
SILLGHKRRFGGDTRLGVRASLLPLAQEGPYALGSGVFAARVEHETPDAR
VSVEISDARKLGWELAAGDTVVQGTVPLDDPQSAKVSVRHEVRL*
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mRNA from alignment at P-wetherbeei_contig2001:4344..6219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2001.2.1 ID=mRNA_P-wetherbeei_contig2001.2.1|Name=mRNA_P-wetherbeei_contig2001.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1876bp|location=Sequence derived from alignment at P-wetherbeei_contig2001:4344..6219+ (Phaeothamnion wetherbeei SAG_119_79)
GTCACGGGGAAGCGGGACGACCAAAGTTATCGGTCAATGTTAAAGATCCA
AAGCTTAGTCAAGGCCCGAGGTCCCTGAACTTGCAAGGTGTAGAATCTTC
TTCTATCTCGATGACCTTTTCCTCCACCTTGCATTTCCAAGTATCAATCG
TAGATCCAAGTTAAGTCAGCAGATCTTCTGTCTTTTCCATTCATCATGGC
ATCTAAGCCTTTAATTAGGTAATTGAGAAACCATCTTCTGTCTTTTCTTA
ACCATTGAAAGTGAAGTCTGAGGTTTGACAGTCGTTCCAATCGTTCAATA
TGATTGTATCGCGTTCTGCGTGTTCAGGCGAATACTCTGTGGACTTAGAC
CCAGATACGGAGCTGGGATTCTCCTGGTCCTTTAACGGCGATCCTCTGAT
GCCATCCTCCATTTTCGCCAAGACGACGAAGCGCGTTCGCGACCCCGCCT
TGGTGGTGTCGGCGAGAGCGACTTATGACGTCCCGTCGACGGTGGCCAAG
CTCCAGGTGCGGCTCTCACTAGGTTTAAAAGTTCAAACTACACAGAATTC
GCCGCAGCCTCTCACCTGGGCAAAGAGAGCTTGCTCTCTGCGCCTCACCT
CGGCGTTAAACGTAGCAAGATTAAGATAGGCATTCATTCGCTCCCAACTG
TGAACCCCGCCCTCGCAGACGAGTGTGGCTTCGGAATACGGCAAGCTGGA
GGGGAGCTGCGACTCGCTGGGGCGGCCCGGCCCGCTGCGGTACTCTAACG
GCTGGGAGGTAAATGGACGGCACGTGTCGGTGTCGCTGGTCCGCGATCTG
CTGCATGGGACGGACGGGTCGGCAAAGCTTTCTGCGGACGTGTGGCCGAA
GGGACCCGTGGCCGAGGTCACGCTGCACGACGACGGAGCGGTGAGCCGCT
TTGCTTCCTTACAGTGTCTGTCCCCCTTGTCAATTCACAAGTGGCATTGA
AACTTTTGAGAGAGACCCAACAGCTCGTCTGCACTCGCTGACTGCCAGAG
TAGTCCCCTTTCATTTCGTTTCCGAAACGCGCCCGAAACGCGTCCCTGCC
GAAGCAGGCGTCGGTGGTGGCCCGGCACTCCATCCTGCTTGGCCACAAGC
GGCGCTTCGGCGGCGACACGCGCCTTGGGGTACGCGCGTCTCTCCTTCCG
CTGGCGCAGGAGGGGCCCTACGCCTTGGGCAGCGGCGTCTTCGCGGCGCG
GGTGGAGCACGAGACACCGGACGCGCGCGTGTCGGTGGAGATCAGCGACG
CGCGGAAGCTAGGGTGGGAGCTAGCAGCTGGGGATACGGTGGTGCAGGGC
ACAGTGCCGCTGGACGACCCGCAGAGCGCCAAGGTCTCCGTCCGGCACGA
GGTGCGCCTATGAACGTTGGCGACCTGCGATGCCACAGTGGACTTCCTAG
TCGGAAGTAAGGAAAGCAAAAAATGAAGGGAAGGAGGCGGGCGGCGCCTG
TCCGGGGCGCACCTGCTCGTCAAGCAGCGCGGCGCGCGCGCCTGCGCCGC
GTCGTTTTTGCATCACAGGTGATTTGGGCATTGCAGAGCGACTGGAACGC
GGAGGGGCAGGGGGCGATGTAGAGAAGAATGGGAGGCTCAGAGAAAAGCG
TGTGTTGGCGTCAAAGAGGTCCACATGGAACAGAAACGAGGGAGATTCAA
GTCGGAAAAGGATGGGTCGGTGGAGAATCTATTGCGTTCTCGAAGGTAAT
ATATCAGTTTCTTCCCTGTAGAAACGAAATGGCAGTTGGGAAAAAACGCT
TCTCGAACTACGGTCAACCACGCGGTATGGCGTGTTTATGGCTTCAGGAA
TTTGCACAGTGCATTTATTGAGGAGGCAGGATAACAAAGCCGTGGCAGAC
CCTACGTGGGATCTGCTTCTTATCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2001:4344..6219+

>mRNA_P-wetherbeei_contig2001.2.1 ID=mRNA_P-wetherbeei_contig2001.2.1|Name=mRNA_P-wetherbeei_contig2001.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=735bp|location=Sequence derived from alignment at P-wetherbeei_contig2001:4344..6219+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTGTATCGCGTTCTGCGTGTTCAGGCGAATACTCTGTGGACTTAGA
CCCAGATACGGAGCTGGGATTCTCCTGGTCCTTTAACGGCGATCCTCTGA
TGCCATCCTCCATTTTCGCCAAGACGACGAAGCGCGTTCGCGACCCCGCC
TTGGTGGTGTCGGCGAGAGCGACTTATGACGTCCCGTCGACGGTGGCCAA
GCTCCAGACGAGTGTGGCTTCGGAATACGGCAAGCTGGAGGGGAGCTGCG
ACTCGCTGGGGCGGCCCGGCCCGCTGCGGTACTCTAACGGCTGGGAGGTA
AATGGACGGCACGTGTCGGTGTCGCTGGTCCGCGATCTGCTGCATGGGAC
GGACGGGTCGGCAAAGCTTTCTGCGGACGTGTGGCCGAAGGGACCCGTGG
CCGAGGTCACGCTGCACGACGACGGAGCGGCGTCGGTGGTGGCCCGGCAC
TCCATCCTGCTTGGCCACAAGCGGCGCTTCGGCGGCGACACGCGCCTTGG
GGTACGCGCGTCTCTCCTTCCGCTGGCGCAGGAGGGGCCCTACGCCTTGG
GCAGCGGCGTCTTCGCGGCGCGGGTGGAGCACGAGACACCGGACGCGCGC
GTGTCGGTGGAGATCAGCGACGCGCGGAAGCTAGGGTGGGAGCTAGCAGC
TGGGGATACGGTGGTGCAGGGCACAGTGCCGCTGGACGACCCGCAGAGCG
CCAAGGTCTCCGTCCGGCACGAGGTGCGCCTATGA
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