mRNA_P-wetherbeei_contig20002.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20002.1.1
Unique NamemRNA_P-wetherbeei_contig20002.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A2P5MCC5_9HYPH (Double-strand break repair protein AddB (Fragment) n=1 Tax=Methylocystis sp. TaxID=1911079 RepID=A0A2P5MCC5_9HYPH)

HSP 1 Score: 318 bits (816), Expect = 1.350e-104
Identity = 173/288 (60.07%), Postives = 203/288 (70.49%), Query Frame = 1
Query:    7 VKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASAD 870
            + APAPRPP+A RPR+MSVSGVETW+ANPYAIFAR +LRL+PL  LG  PDA+LRG+I+H ALS+ T A+P  LPPD   EL+  ARA LE+ TG+PRVAAFW+ RLERFAHWF  TEAARREG      E AG+  +  PAG F L+ARADRIDI    L ITDYKTG   S  R     G APQL LEAAIA A GFAD P   IA LRYI ASGGEP G+   +++ D   L     A L +LIA FDD TTPY A++R+RF+YD+D +AHLAR  EWS   S +
Sbjct:   94 IAAPAPRPPVADRPRRMSVSGVETWIANPYAIFARHVLRLEPLQRLGEPPDASLRGAIVHEALSRFTVAFPCSLPPDPATELLSIARAVLEDYTGHPRVAAFWLTRLERFAHWFAETEAARREGFDAVATEVAGKLVIPAPAGPFTLSARADRIDIGEGRLRITDYKTGQIPSGER--VLSGAAPQLPLEAAIAAAHGFADVPPGTIAELRYIRASGGEPPGEERTIKTADAAALGQAQVAQLAQLIARFDDPTTPYSALRRSRFNYDYDDFAHLARIGEWSADDSGE 379          
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A7C4TWI3_9HYPH (Double-strand break repair protein AddB n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TWI3_9HYPH)

HSP 1 Score: 327 bits (838), Expect = 5.840e-101
Identity = 170/289 (58.82%), Postives = 209/289 (72.32%), Query Frame = 1
Query:    7 VKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADE 873
            V AP PRPP+ALRPR++SVS VE W+ NPY IFA  IL L PLP LGAEPDAALRG++IH AL++   AYP  LP D   EL+R A   L +   +PRVAAFW+ R ERFA WF  TE  RR GV  S  EA+G   L+ P G F L+ARADRID+   G++ITDYK+GASLS+L+ +AE+G+APQLALEAAIAL  GFA   A R+AGLRYIS++GGEP G   +L + D+  LA  +R+GL RL+A FD   TPYRAV+R+RFSYD+D YAHLAR  EW+   + +E
Sbjct:  756 VGAPEPRPPVALRPRRLSVSEVEAWIRNPYHIFAAKILNLAPLPRLGAEPDAALRGTVIHQALARFGAAYPSKLPADPARELLRMAEETLADYLVSPRVAAFWLPRFERFAQWFAATEPGRRAGVRASHAEASGSLVLDTPGGAFTLSARADRIDVVAGGVIITDYKSGASLSRLKSNAEKGYAPQLALEAAIALGGGFAGIGATRVAGLRYISSAGGEPPGAEFDLAAGDIEDLARKSRSGLARLVAEFDQVDTPYRAVRRSRFSYDYDEYAHLARAQEWASIETEEE 1044          
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A537ZY76_9ACTN (Double-strand break repair protein AddB n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZY76_9ACTN)

HSP 1 Score: 325 bits (833), Expect = 2.690e-100
Identity = 173/292 (59.25%), Postives = 210/292 (71.92%), Query Frame = 1
Query:    1 KPVKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADEE 876
            +PV+AP PRP L LRPR++SV+ +E W+ANPYAIFA+ IL L+PLP+LG +PDAALRG I+H AL +    +P  LP D+ AEL+ FA A L ELTG+PRVAAFW  R  RFA WF  TE  RREGV + L E  G   L G AG F+LTARADRID+   GL+ITDYKTG ++  L   A QG APQL LEAAIA A GF   PAA++A LRYIS SGGEP G    L++ D+ +LA   + GLE+LIAA+D+  TPYRA++RARF+Y +D YAHLAR AEWS  A  DEE
Sbjct:  745 RPVRAPEPRPALDLRPRRLSVTTIEKWIANPYAIFAQRILGLEPLPMLGRQPDAALRGQIVHDALGRFAARFPQRLPDDVCAELVGFAEAGLAELTGSPRVAAFWAPRFARFAAWFAETEHNRREGVDRILAEVEGSLVLAGTAGPFMLTARADRIDVGKAGLIITDYKTGGNIKDLASRATQGEAPQLPLEAAIAAAGGFTGLPAAKVAELRYISGSGGEPPGQECTLKNGDVAQLARAAQQGLEKLIAAYDNAATPYRALRRARFTYRYDDYAHLARVAEWS--AETDEE 1034          
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A6N6SXU2_9HYPH (Double-strand break repair protein AddB n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SXU2_9HYPH)

HSP 1 Score: 322 bits (826), Expect = 3.200e-99
Identity = 172/284 (60.56%), Postives = 204/284 (71.83%), Query Frame = 1
Query:    1 KPVKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWS 852
            KPV+AP PRP LALRPR++SV+ VE W+ANPYA+FA+ IL L+PLP LG EPDAALRG I+H ALS+  + +P  LP D   EL+  A A L + TG+PRVAAFW  R  RFA WF  TE ARR G+T+++ E  G+  LEGP G F LTARADR+DI   G+VITDYKTG++L+ L   A+ G APQL LEAAIAL  GFA      + GLRYISASGGEP G   +L   D   LA D  AGL RLIA FD E TPYRA++RARF+YD+D YAHLAR AEWS
Sbjct:  755 KPVRAPTPRPALALRPRQLSVTAVEKWIANPYALFAQRILGLEPLPPLGLEPDAALRGQIVHDALSRFARRFPEALPDDACGELLALAEAALADYTGSPRVAAFWAPRFARFAAWFAETEPARRAGMTRTIAEVDGRMVLEGPGGAFTLTARADRVDIGAGGVVITDYKTGSNLASLAGRAKHGEAPQLPLEAAIALTGGFAGVGKGPVLGLRYISASGGEPPGHERDLDG-DAALLARDAEAGLARLIAEFDREATPYRALRRARFTYDYDDYAHLARVAEWS 1037          
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A2S5P7W0_HYPSQ (Double-strand break repair protein AddB n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5P7W0_HYPSQ)

HSP 1 Score: 320 bits (821), Expect = 1.800e-98
Identity = 173/288 (60.07%), Postives = 203/288 (70.49%), Query Frame = 1
Query:    7 VKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASAD 870
            + APAPRPP+A RPR+MSVSGVETW+ANPYAIFAR +LRL+PL  LG  PDA+LRG+I+H ALS+ T A+P  LPPD   EL+  ARA LE+ TG+PRVAAFW+ RLERFAHWF  TEAARREG      E AG+  +  PAG F L+ARADRIDI    L ITDYKTG   S  R     G APQL LEAAIA A GFAD P   IA LRYI ASGGEP G+   +++ D   L     A L +LIA FDD TTPY A++R+RF+YD+D +AHLAR  EWS   S +
Sbjct:  762 IAAPAPRPPVADRPRRMSVSGVETWIANPYAIFARHVLRLEPLQRLGEPPDASLRGAIVHEALSRFTVAFPSSLPPDPATELIAIARAVLEDYTGHPRVAAFWLTRLERFAHWFAETEAARREGFNAVATEVAGKLVIPAPAGPFTLSARADRIDIGEGRLRITDYKTGQIPSGER--VLSGAAPQLPLEAAIAAAHGFADVPPGTIAELRYIRASGGEPPGEERTIKTSDAAALGQAQVAQLAQLIARFDDPTTPYSALRRSRFNYDYDDFAHLARVGEWSADDSGE 1047          
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A3N5P1Y9_9HYPH (PDDEXK_1 domain-containing protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A3N5P1Y9_9HYPH)

HSP 1 Score: 301 bits (770), Expect = 1.110e-97
Identity = 165/294 (56.12%), Postives = 205/294 (69.73%), Query Frame = 1
Query:    1 KPVKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAG--DVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADEE 876
            +P+ AP PRP +ALRPR++SV+ +E W+ANPYAIFA  IL L  LP L   P AALRG I+H ALS+  + +P  LP D  AEL   A+A L +LTG+PRVAAFW  RLERFA WF  TE ARR  + KS  E  G+  L+GPAG F L ARADRID+  DGL+ITDYKT ASL  L ++A+ G APQL LEAAIA A GF + PA  +  LRYISA+GG+P G  + ++L    + +LA + RAGL+ LIA FD   TPYRA++R RF YD+D +AHLAR AEW+    +DEE
Sbjct:   84 RPLPAPEPRPAVALRPRQLSVTDIEKWLANPYAIFAARILGLQRLPDLMRLPGAALRGQIVHQALSRFARRFPEALPEDTAAELKACAQAALLDLTGSPRVAAFWAPRLERFAAWFAETEPARRRAIRKSYAELDGKLVLQGPAGPFTLRARADRIDVGADGLIITDYKTSASLESLLRNAKAGRAPQLPLEAAIAAAGGFPELPAQPVVALRYISAAGGKPPGLEEDLDLNPAAVTELANEARAGLDHLIAQFDRPETPYRALRRPRFRYDYDDFAHLARVAEWA--IESDEE 375          
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A7C2LTM5_9HYPH (Double-strand break repair protein AddB n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2LTM5_9HYPH)

HSP 1 Score: 312 bits (799), Expect = 2.000e-95
Identity = 173/290 (59.66%), Postives = 198/290 (68.28%), Query Frame = 1
Query:    7 VKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADEE 876
            V  P PRP LALRPR++SV+ VE W+ANPYA++A  IL L+PL  LG  PDA LRG I+H AL +    +P  LP DI  EL+  AR  LEELTG+P VAAFW+ R ERFA WF  TEAARREGV + L E  G   L  P G F L ARADRID    GLVITDYKTGAS+  L   A+ G APQL LEAAIA A GFA   AAR+AGLRYIS+SGGEP G    + + D  +L      GLERL+AAFD E TPYRA++R RFSY +DAYAHLAR AEW   A  DEE
Sbjct:  739 VDPPEPRPALALRPRRISVTAVERWIANPYALYADRILGLEPLAGLGEPPDATLRGQIVHDALGRFAARFPAALPADIAGELLACAREALEELTGSPYVAAFWVPRFERFAAWFAETEAARREGVGRVLAEVQGSMVLAAPGGPFKLEARADRIDAGAAGLVITDYKTGASVKDLVSRAKTGAAPQLPLEAAIAAAGGFAGVEAARVAGLRYISSSGGEPPGQEHAVGNGDAEELGRRALGGLERLVAAFDREATPYRALRRPRFSYRYDAYAHLARVAEWQ--ADTDEE 1026          
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: UPI001FCDEBA1 (double-strand break repair protein AddB n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI001FCDEBA1)

HSP 1 Score: 312 bits (799), Expect = 2.190e-95
Identity = 169/289 (58.48%), Postives = 200/289 (69.20%), Query Frame = 1
Query:   16 PAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIA--LAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADEE 876
            P PRP +A RPRK+SVS +ETW+ NPYAIFA +IL+L PLP LG  P  ALRGSIIH ALSK   AYP  LP D+  EL+RFARA LE    +PR+AAFW+ R ERFA WF  TE ARR G+T+ + E  G+  L+ PAG F LTARADRIDI    LVI+DYKTGA      K   +G +PQL LEAAIA  +A GF   P   +A LRYI ASGGEP GD  +++  D+G LA     GL+R +A FDDE TPYR ++RARF Y +D YAHLAR AEWS GA A+EE
Sbjct:  746 PEPRPAVAQRPRKLSVSRIETWIGNPYAIFASEILKLTPLPPLGEPPGPALRGSIIHDALSKFAAAYPASLPDDVRGELVRFARASLEAYAAHPRIAAFWIPRFERFAEWFAATEPARRAGITQVMAEVKGELVLDAPAGPFKLTARADRIDIADASLVISDYKTGAPPPD--KKVLEGVSPQLPLEAAIARDVALGFEKIPKRPVATLRYIRASGGEPPGDQRDVKVPDVGALADQALDGLKRHVARFDDEATPYRPLRRARFGYAYDDYAHLARVAEWSSGAVAEEE 1032          
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: UPI001FD8C21B (double-strand break repair protein AddB n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI001FD8C21B)

HSP 1 Score: 312 bits (799), Expect = 4.240e-95
Identity = 172/292 (58.90%), Postives = 203/292 (69.52%), Query Frame = 1
Query:    7 VKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIA--LAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADEE 876
            +KAP PRP LA RPRK+SVS +ETW+ NPYAIFARDIL+L+PL  LG  P AALRGSIIH ALS   +AYP +LP +  AEL+RFARA L+    +PR+AAFW+ R ERFA WF  TE ARR GV +   E  GQ     PAG F LTARADRIDI  + LVI+DYKTG   S  +  A  G APQL LEAAIA     GF   P   +A LRYI ASGGEP G+  +++  D+  LAA+   GL+R +A FDDE TPYR ++RARF YD+D YAHLAR AEWS GAS +EE
Sbjct:  790 LKAPEPRPTLAQRPRKLSVSRIETWIGNPYAIFARDILKLEPLDPLGQPPGAALRGSIIHGALSAFAEAYPTELPENTEAELVRFARATLDAYAAHPRIAAFWIPRFERFAAWFAATEPARRAGVAQVRTEINGQLVFAAPAGPFTLTARADRIDIMQEALVISDYKTGNPPSDTKVLA--GVAPQLPLEAAIAGDATLGFEKMPKRPVATLRYIRASGGEPPGEEHDVKVPDVATLAAEALVGLQRHVARFDDERTPYRPLRRARFGYDYDEYAHLARVAEWSSGASGEEE 1079          
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A537S5F1_9PROT (Double-strand break repair protein AddB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537S5F1_9PROT)

HSP 1 Score: 311 bits (796), Expect = 7.570e-95
Identity = 164/284 (57.75%), Postives = 202/284 (71.13%), Query Frame = 1
Query:    1 KPVKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWS 852
            +PV+AP PRP L LRPR++S + +E W+ANPYA+FA  IL L+ LP LG  PDAALRG I+H AL +  + +P  LP  I AEL+  A+  L+EL+G+PRVAAFW  R +RFA WF  TE ARR+ V  +L E  G   L GPAG F L ARADRIDI   G+VITDYKTG ++  L   AEQG APQL LEAAIA   GF+   A++++GLRYISASGGEP G  + L  +D+ +LA + R GL RLIAAFDD   PYRA++RARF+Y +D YAHLAR AEWS
Sbjct:  761 RPVRAPEPRPALELRPRQLSATTIERWIANPYAVFAERILGLEMLPALGRPPDAALRGQIVHEALGRFAQRFPDKLPEAIRAELVALAKTALQELSGSPRVAAFWAPRFDRFAEWFADTERARRDDVHHTLAEVEGAIVLPGPAGPFTLKARADRIDIGDGGIVITDYKTG-NVKDLAGRAEQGRAPQLPLEAAIAAGGGFSGITASKVSGLRYISASGGEPPGQEVRLDVDDIARLAQEAREGLIRLIAAFDDAAAPYRALRRARFNYRYDDYAHLARVAEWS 1043          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P5MCC5_9HYPH1.350e-10460.07Double-strand break repair protein AddB (Fragment)... [more]
A0A7C4TWI3_9HYPH5.840e-10158.82Double-strand break repair protein AddB n=1 Tax=Hy... [more]
A0A537ZY76_9ACTN2.690e-10059.25Double-strand break repair protein AddB n=1 Tax=Ac... [more]
A0A6N6SXU2_9HYPH3.200e-9960.56Double-strand break repair protein AddB n=1 Tax=Hy... [more]
A0A2S5P7W0_HYPSQ1.800e-9860.07Double-strand break repair protein AddB n=1 Tax=Hy... [more]
A0A3N5P1Y9_9HYPH1.110e-9756.12PDDEXK_1 domain-containing protein n=1 Tax=Hyphomi... [more]
A0A7C2LTM5_9HYPH2.000e-9559.66Double-strand break repair protein AddB n=1 Tax=Hy... [more]
UPI001FCDEBA12.190e-9558.48double-strand break repair protein AddB n=1 Tax=Hy... [more]
UPI001FD8C21B4.240e-9558.90double-strand break repair protein AddB n=1 Tax=Hy... [more]
A0A537S5F1_9PROT7.570e-9557.75Double-strand break repair protein AddB n=1 Tax=Al... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20002contigP-wetherbeei_contig20002:368..1246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1267005.KB911265_gene3597
Preferred nameaddB
PFAMsPDDEXK_1
Model size879
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K16899
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.39e-96
EggNOG OGsCOG2887@1|root,COG3893@1|root,COG2887@2|Bacteria,COG3893@2|Bacteria,1MY2G@1224|Proteobacteria,2TS74@28211|Alphaproteobacteria,3N6H7@45401|Hyphomicrobiaceae
EC3.6.4.12
DescriptionPD-(D/E)XK nuclease superfamily
Cds size879
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.2724133-CDS-P-wetherbeei_contig20002:367..12461683186188.2724133-CDS-P-wetherbeei_contig20002:367..1246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20002 368..1246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20002.1.1prot_P-wetherbeei_contig20002.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20002 368..1246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20002.1.1

>prot_P-wetherbeei_contig20002.1.1 ID=prot_P-wetherbeei_contig20002.1.1|Name=mRNA_P-wetherbeei_contig20002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=293bp
KPVKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGA
EPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPR
VAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILT
ARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEG
FADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIA
AFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADEE*
back to top

mRNA from alignment at P-wetherbeei_contig20002:368..1246-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20002.1.1 ID=mRNA_P-wetherbeei_contig20002.1.1|Name=mRNA_P-wetherbeei_contig20002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=879bp|location=Sequence derived from alignment at P-wetherbeei_contig20002:368..1246- (Phaeothamnion wetherbeei SAG_119_79)
AAACCGGTGAAAGCGCCCGCCCCCCGGCCGCCTTTGGCCTTGCGGCCGCG CAAGATGTCGGTCAGCGGCGTCGAGACGTGGATGGCAAATCCCTATGCCA TATTCGCGCGCGACATCCTGCGCCTCGATCCGCTCCCCCTGCTCGGCGCC GAACCCGACGCGGCACTGCGCGGCAGCATCATCCACACCGCGCTCTCCAA GGTGACGAAAGCCTATCCCGGCGACCTCCCGCCCGACATCGGTGCCGAAT TGATGCGTTTTGCCCGCGCCGAACTCGAAGAGCTGACCGGCAATCCGCGC GTCGCTGCGTTCTGGATGTTGCGCCTGGAACGGTTCGCCCATTGGTTCGG GGGCACCGAGGCCGCGCGCCGCGAAGGTGTAACGAAATCCCTGGTCGAAG CGGCCGGCCAGACCAATCTCGAAGGCCCCGCCGGCAAATTCATCCTGACC GCCCGCGCCGACCGCATCGACATCCGCGGCGATGGTCTGGTGATCACCGA CTACAAGACAGGCGCCAGCCTGTCCAAGCTGCGCAAGGATGCCGAGCAGG GCTTCGCCCCCCAACTCGCCCTCGAAGCCGCCATCGCACTGGCCGAAGGC TTTGCCGACGCGCCCGCCGCGCGCATCGCCGGGCTGCGTTACATTTCCGC GTCCGGCGGCGAGCCCGCAGGCGACGTCATCGAGCTTCGATCGGAGGATC TCGGCAAGCTTGCTGCCGATACGCGCGCCGGCCTCGAACGCCTGATCGCC GCATTCGACGACGAGACGACGCCCTATCGCGCCGTCCAGCGCGCACGCTT CTCCTACGACTTCGACGCCTACGCACATTTGGCCCGCACCGCCGAATGGT CCGGCGGCGCGTCGGCGGACGAGGAGTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20002:368..1246-

>mRNA_P-wetherbeei_contig20002.1.1 ID=mRNA_P-wetherbeei_contig20002.1.1|Name=mRNA_P-wetherbeei_contig20002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=879bp|location=Sequence derived from alignment at P-wetherbeei_contig20002:368..1246- (Phaeothamnion wetherbeei SAG_119_79)
AAACCGGTGAAAGCGCCCGCCCCCCGGCCGCCTTTGGCCTTGCGGCCGCG
CAAGATGTCGGTCAGCGGCGTCGAGACGTGGATGGCAAATCCCTATGCCA
TATTCGCGCGCGACATCCTGCGCCTCGATCCGCTCCCCCTGCTCGGCGCC
GAACCCGACGCGGCACTGCGCGGCAGCATCATCCACACCGCGCTCTCCAA
GGTGACGAAAGCCTATCCCGGCGACCTCCCGCCCGACATCGGTGCCGAAT
TGATGCGTTTTGCCCGCGCCGAACTCGAAGAGCTGACCGGCAATCCGCGC
GTCGCTGCGTTCTGGATGTTGCGCCTGGAACGGTTCGCCCATTGGTTCGG
GGGCACCGAGGCCGCGCGCCGCGAAGGTGTAACGAAATCCCTGGTCGAAG
CGGCCGGCCAGACCAATCTCGAAGGCCCCGCCGGCAAATTCATCCTGACC
GCCCGCGCCGACCGCATCGACATCCGCGGCGATGGTCTGGTGATCACCGA
CTACAAGACAGGCGCCAGCCTGTCCAAGCTGCGCAAGGATGCCGAGCAGG
GCTTCGCCCCCCAACTCGCCCTCGAAGCCGCCATCGCACTGGCCGAAGGC
TTTGCCGACGCGCCCGCCGCGCGCATCGCCGGGCTGCGTTACATTTCCGC
GTCCGGCGGCGAGCCCGCAGGCGACGTCATCGAGCTTCGATCGGAGGATC
TCGGCAAGCTTGCTGCCGATACGCGCGCCGGCCTCGAACGCCTGATCGCC
GCATTCGACGACGAGACGACGCCCTATCGCGCCGTCCAGCGCGCACGCTT
CTCCTACGACTTCGACGCCTACGCACATTTGGCCCGCACCGCCGAATGGT
CCGGCGGCGCGTCGGCGGACGAGGAGTAG
back to top