mRNA_P-wetherbeei_contig20002.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A2P5MCC5_9HYPH (Double-strand break repair protein AddB (Fragment) n=1 Tax=Methylocystis sp. TaxID=1911079 RepID=A0A2P5MCC5_9HYPH) HSP 1 Score: 318 bits (816), Expect = 1.350e-104 Identity = 173/288 (60.07%), Postives = 203/288 (70.49%), Query Frame = 1
Query: 7 VKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASAD 870
+ APAPRPP+A RPR+MSVSGVETW+ANPYAIFAR +LRL+PL LG PDA+LRG+I+H ALS+ T A+P LPPD EL+ ARA LE+ TG+PRVAAFW+ RLERFAHWF TEAARREG E AG+ + PAG F L+ARADRIDI L ITDYKTG S R G APQL LEAAIA A GFAD P IA LRYI ASGGEP G+ +++ D L A L +LIA FDD TTPY A++R+RF+YD+D +AHLAR EWS S +
Sbjct: 94 IAAPAPRPPVADRPRRMSVSGVETWIANPYAIFARHVLRLEPLQRLGEPPDASLRGAIVHEALSRFTVAFPCSLPPDPATELLSIARAVLEDYTGHPRVAAFWLTRLERFAHWFAETEAARREGFDAVATEVAGKLVIPAPAGPFTLSARADRIDIGEGRLRITDYKTGQIPSGER--VLSGAAPQLPLEAAIAAAHGFADVPPGTIAELRYIRASGGEPPGEERTIKTADAAALGQAQVAQLAQLIARFDDPTTPYSALRRSRFNYDYDDFAHLARIGEWSADDSGE 379
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A7C4TWI3_9HYPH (Double-strand break repair protein AddB n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TWI3_9HYPH) HSP 1 Score: 327 bits (838), Expect = 5.840e-101 Identity = 170/289 (58.82%), Postives = 209/289 (72.32%), Query Frame = 1
Query: 7 VKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADE 873
V AP PRPP+ALRPR++SVS VE W+ NPY IFA IL L PLP LGAEPDAALRG++IH AL++ AYP LP D EL+R A L + +PRVAAFW+ R ERFA WF TE RR GV S EA+G L+ P G F L+ARADRID+ G++ITDYK+GASLS+L+ +AE+G+APQLALEAAIAL GFA A R+AGLRYIS++GGEP G +L + D+ LA +R+GL RL+A FD TPYRAV+R+RFSYD+D YAHLAR EW+ + +E
Sbjct: 756 VGAPEPRPPVALRPRRLSVSEVEAWIRNPYHIFAAKILNLAPLPRLGAEPDAALRGTVIHQALARFGAAYPSKLPADPARELLRMAEETLADYLVSPRVAAFWLPRFERFAQWFAATEPGRRAGVRASHAEASGSLVLDTPGGAFTLSARADRIDVVAGGVIITDYKSGASLSRLKSNAEKGYAPQLALEAAIALGGGFAGIGATRVAGLRYISSAGGEPPGAEFDLAAGDIEDLARKSRSGLARLVAEFDQVDTPYRAVRRSRFSYDYDEYAHLARAQEWASIETEEE 1044
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A537ZY76_9ACTN (Double-strand break repair protein AddB n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZY76_9ACTN) HSP 1 Score: 325 bits (833), Expect = 2.690e-100 Identity = 173/292 (59.25%), Postives = 210/292 (71.92%), Query Frame = 1
Query: 1 KPVKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADEE 876
+PV+AP PRP L LRPR++SV+ +E W+ANPYAIFA+ IL L+PLP+LG +PDAALRG I+H AL + +P LP D+ AEL+ FA A L ELTG+PRVAAFW R RFA WF TE RREGV + L E G L G AG F+LTARADRID+ GL+ITDYKTG ++ L A QG APQL LEAAIA A GF PAA++A LRYIS SGGEP G L++ D+ +LA + GLE+LIAA+D+ TPYRA++RARF+Y +D YAHLAR AEWS A DEE
Sbjct: 745 RPVRAPEPRPALDLRPRRLSVTTIEKWIANPYAIFAQRILGLEPLPMLGRQPDAALRGQIVHDALGRFAARFPQRLPDDVCAELVGFAEAGLAELTGSPRVAAFWAPRFARFAAWFAETEHNRREGVDRILAEVEGSLVLAGTAGPFMLTARADRIDVGKAGLIITDYKTGGNIKDLASRATQGEAPQLPLEAAIAAAGGFTGLPAAKVAELRYISGSGGEPPGQECTLKNGDVAQLARAAQQGLEKLIAAYDNAATPYRALRRARFTYRYDDYAHLARVAEWS--AETDEE 1034
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A6N6SXU2_9HYPH (Double-strand break repair protein AddB n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SXU2_9HYPH) HSP 1 Score: 322 bits (826), Expect = 3.200e-99 Identity = 172/284 (60.56%), Postives = 204/284 (71.83%), Query Frame = 1
Query: 1 KPVKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWS 852
KPV+AP PRP LALRPR++SV+ VE W+ANPYA+FA+ IL L+PLP LG EPDAALRG I+H ALS+ + +P LP D EL+ A A L + TG+PRVAAFW R RFA WF TE ARR G+T+++ E G+ LEGP G F LTARADR+DI G+VITDYKTG++L+ L A+ G APQL LEAAIAL GFA + GLRYISASGGEP G +L D LA D AGL RLIA FD E TPYRA++RARF+YD+D YAHLAR AEWS
Sbjct: 755 KPVRAPTPRPALALRPRQLSVTAVEKWIANPYALFAQRILGLEPLPPLGLEPDAALRGQIVHDALSRFARRFPEALPDDACGELLALAEAALADYTGSPRVAAFWAPRFARFAAWFAETEPARRAGMTRTIAEVDGRMVLEGPGGAFTLTARADRVDIGAGGVVITDYKTGSNLASLAGRAKHGEAPQLPLEAAIALTGGFAGVGKGPVLGLRYISASGGEPPGHERDLDG-DAALLARDAEAGLARLIAEFDREATPYRALRRARFTYDYDDYAHLARVAEWS 1037
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A2S5P7W0_HYPSQ (Double-strand break repair protein AddB n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5P7W0_HYPSQ) HSP 1 Score: 320 bits (821), Expect = 1.800e-98 Identity = 173/288 (60.07%), Postives = 203/288 (70.49%), Query Frame = 1
Query: 7 VKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASAD 870
+ APAPRPP+A RPR+MSVSGVETW+ANPYAIFAR +LRL+PL LG PDA+LRG+I+H ALS+ T A+P LPPD EL+ ARA LE+ TG+PRVAAFW+ RLERFAHWF TEAARREG E AG+ + PAG F L+ARADRIDI L ITDYKTG S R G APQL LEAAIA A GFAD P IA LRYI ASGGEP G+ +++ D L A L +LIA FDD TTPY A++R+RF+YD+D +AHLAR EWS S +
Sbjct: 762 IAAPAPRPPVADRPRRMSVSGVETWIANPYAIFARHVLRLEPLQRLGEPPDASLRGAIVHEALSRFTVAFPSSLPPDPATELIAIARAVLEDYTGHPRVAAFWLTRLERFAHWFAETEAARREGFNAVATEVAGKLVIPAPAGPFTLSARADRIDIGEGRLRITDYKTGQIPSGER--VLSGAAPQLPLEAAIAAAHGFADVPPGTIAELRYIRASGGEPPGEERTIKTSDAAALGQAQVAQLAQLIARFDDPTTPYSALRRSRFNYDYDDFAHLARVGEWSADDSGE 1047
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A3N5P1Y9_9HYPH (PDDEXK_1 domain-containing protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A3N5P1Y9_9HYPH) HSP 1 Score: 301 bits (770), Expect = 1.110e-97 Identity = 165/294 (56.12%), Postives = 205/294 (69.73%), Query Frame = 1
Query: 1 KPVKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAG--DVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADEE 876
+P+ AP PRP +ALRPR++SV+ +E W+ANPYAIFA IL L LP L P AALRG I+H ALS+ + +P LP D AEL A+A L +LTG+PRVAAFW RLERFA WF TE ARR + KS E G+ L+GPAG F L ARADRID+ DGL+ITDYKT ASL L ++A+ G APQL LEAAIA A GF + PA + LRYISA+GG+P G + ++L + +LA + RAGL+ LIA FD TPYRA++R RF YD+D +AHLAR AEW+ +DEE
Sbjct: 84 RPLPAPEPRPAVALRPRQLSVTDIEKWLANPYAIFAARILGLQRLPDLMRLPGAALRGQIVHQALSRFARRFPEALPEDTAAELKACAQAALLDLTGSPRVAAFWAPRLERFAAWFAETEPARRRAIRKSYAELDGKLVLQGPAGPFTLRARADRIDVGADGLIITDYKTSASLESLLRNAKAGRAPQLPLEAAIAAAGGFPELPAQPVVALRYISAAGGKPPGLEEDLDLNPAAVTELANEARAGLDHLIAQFDRPETPYRALRRPRFRYDYDDFAHLARVAEWA--IESDEE 375
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A7C2LTM5_9HYPH (Double-strand break repair protein AddB n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2LTM5_9HYPH) HSP 1 Score: 312 bits (799), Expect = 2.000e-95 Identity = 173/290 (59.66%), Postives = 198/290 (68.28%), Query Frame = 1
Query: 7 VKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADEE 876
V P PRP LALRPR++SV+ VE W+ANPYA++A IL L+PL LG PDA LRG I+H AL + +P LP DI EL+ AR LEELTG+P VAAFW+ R ERFA WF TEAARREGV + L E G L P G F L ARADRID GLVITDYKTGAS+ L A+ G APQL LEAAIA A GFA AAR+AGLRYIS+SGGEP G + + D +L GLERL+AAFD E TPYRA++R RFSY +DAYAHLAR AEW A DEE
Sbjct: 739 VDPPEPRPALALRPRRISVTAVERWIANPYALYADRILGLEPLAGLGEPPDATLRGQIVHDALGRFAARFPAALPADIAGELLACAREALEELTGSPYVAAFWVPRFERFAAWFAETEAARREGVGRVLAEVQGSMVLAAPGGPFKLEARADRIDAGAAGLVITDYKTGASVKDLVSRAKTGAAPQLPLEAAIAAAGGFAGVEAARVAGLRYISSSGGEPPGQEHAVGNGDAEELGRRALGGLERLVAAFDREATPYRALRRPRFSYRYDAYAHLARVAEWQ--ADTDEE 1026
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: UPI001FCDEBA1 (double-strand break repair protein AddB n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI001FCDEBA1) HSP 1 Score: 312 bits (799), Expect = 2.190e-95 Identity = 169/289 (58.48%), Postives = 200/289 (69.20%), Query Frame = 1
Query: 16 PAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIA--LAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADEE 876
P PRP +A RPRK+SVS +ETW+ NPYAIFA +IL+L PLP LG P ALRGSIIH ALSK AYP LP D+ EL+RFARA LE +PR+AAFW+ R ERFA WF TE ARR G+T+ + E G+ L+ PAG F LTARADRIDI LVI+DYKTGA K +G +PQL LEAAIA +A GF P +A LRYI ASGGEP GD +++ D+G LA GL+R +A FDDE TPYR ++RARF Y +D YAHLAR AEWS GA A+EE
Sbjct: 746 PEPRPAVAQRPRKLSVSRIETWIGNPYAIFASEILKLTPLPPLGEPPGPALRGSIIHDALSKFAAAYPASLPDDVRGELVRFARASLEAYAAHPRIAAFWIPRFERFAEWFAATEPARRAGITQVMAEVKGELVLDAPAGPFKLTARADRIDIADASLVISDYKTGAPPPD--KKVLEGVSPQLPLEAAIARDVALGFEKIPKRPVATLRYIRASGGEPPGDQRDVKVPDVGALADQALDGLKRHVARFDDEATPYRPLRRARFGYAYDDYAHLARVAEWSSGAVAEEE 1032
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: UPI001FD8C21B (double-strand break repair protein AddB n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI001FD8C21B) HSP 1 Score: 312 bits (799), Expect = 4.240e-95 Identity = 172/292 (58.90%), Postives = 203/292 (69.52%), Query Frame = 1
Query: 7 VKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIA--LAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWSGGASADEE 876
+KAP PRP LA RPRK+SVS +ETW+ NPYAIFARDIL+L+PL LG P AALRGSIIH ALS +AYP +LP + AEL+RFARA L+ +PR+AAFW+ R ERFA WF TE ARR GV + E GQ PAG F LTARADRIDI + LVI+DYKTG S + A G APQL LEAAIA GF P +A LRYI ASGGEP G+ +++ D+ LAA+ GL+R +A FDDE TPYR ++RARF YD+D YAHLAR AEWS GAS +EE
Sbjct: 790 LKAPEPRPTLAQRPRKLSVSRIETWIGNPYAIFARDILKLEPLDPLGQPPGAALRGSIIHGALSAFAEAYPTELPENTEAELVRFARATLDAYAAHPRIAAFWIPRFERFAAWFAATEPARRAGVAQVRTEINGQLVFAAPAGPFTLTARADRIDIMQEALVISDYKTGNPPSDTKVLA--GVAPQLPLEAAIAGDATLGFEKMPKRPVATLRYIRASGGEPPGEEHDVKVPDVATLAAEALVGLQRHVARFDDERTPYRPLRRARFGYDYDEYAHLARVAEWSSGASGEEE 1079
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Match: A0A537S5F1_9PROT (Double-strand break repair protein AddB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537S5F1_9PROT) HSP 1 Score: 311 bits (796), Expect = 7.570e-95 Identity = 164/284 (57.75%), Postives = 202/284 (71.13%), Query Frame = 1
Query: 1 KPVKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAEPDAALRGSIIHTALSKVTKAYPGDLPPDIGAELMRFARAELEELTGNPRVAAFWMLRLERFAHWFGGTEAARREGVTKSLVEAAGQTNLEGPAGKFILTARADRIDIRGDGLVITDYKTGASLSKLRKDAEQGFAPQLALEAAIALAEGFADAPAARIAGLRYISASGGEPAGDVIELRSEDLGKLAADTRAGLERLIAAFDDETTPYRAVQRARFSYDFDAYAHLARTAEWS 852
+PV+AP PRP L LRPR++S + +E W+ANPYA+FA IL L+ LP LG PDAALRG I+H AL + + +P LP I AEL+ A+ L+EL+G+PRVAAFW R +RFA WF TE ARR+ V +L E G L GPAG F L ARADRIDI G+VITDYKTG ++ L AEQG APQL LEAAIA GF+ A++++GLRYISASGGEP G + L +D+ +LA + R GL RLIAAFDD PYRA++RARF+Y +D YAHLAR AEWS
Sbjct: 761 RPVRAPEPRPALELRPRQLSATTIERWIANPYAVFAERILGLEMLPALGRPPDAALRGQIVHEALGRFAQRFPDKLPEAIRAELVALAKTALQELSGSPRVAAFWAPRFDRFAEWFADTERARRDDVHHTLAEVEGAIVLPGPAGPFTLKARADRIDIGDGGIVITDYKTG-NVKDLAGRAEQGRAPQLPLEAAIAAGGGFSGITASKVSGLRYISASGGEPPGQEVRLDVDDIARLAQEAREGLIRLIAAFDDAAAPYRALRRARFNYRYDDYAHLARVAEWS 1043 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20002.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20002.1.1 >prot_P-wetherbeei_contig20002.1.1 ID=prot_P-wetherbeei_contig20002.1.1|Name=mRNA_P-wetherbeei_contig20002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=293bp KPVKAPAPRPPLALRPRKMSVSGVETWMANPYAIFARDILRLDPLPLLGAback to top mRNA from alignment at P-wetherbeei_contig20002:368..1246- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20002.1.1 ID=mRNA_P-wetherbeei_contig20002.1.1|Name=mRNA_P-wetherbeei_contig20002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=879bp|location=Sequence derived from alignment at P-wetherbeei_contig20002:368..1246- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20002:368..1246- >mRNA_P-wetherbeei_contig20002.1.1 ID=mRNA_P-wetherbeei_contig20002.1.1|Name=mRNA_P-wetherbeei_contig20002.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=879bp|location=Sequence derived from alignment at P-wetherbeei_contig20002:368..1246- (Phaeothamnion wetherbeei SAG_119_79)back to top |