mRNA_P-wetherbeei_contig2000.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2000.1.1
Unique NamemRNA_P-wetherbeei_contig2000.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2000.1.1 vs. uniprot
Match: A0A836C8D5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D5_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.180e-37
Identity = 115/346 (33.24%), Postives = 167/346 (48.27%), Query Frame = 1
Query:  163 DRQQCLSLRLGLKRHC--------------PPLFAKSGRTFTECTRPPGTYWGAPSPDTTDKELQALREDCRSQKFLLWTRNSGDYWAGHSHKSWSMECSFGEAANLSRVLVYDDFAAMDGLHVGRKPGPKEGVEVPIGAWHDDSELQKLPA--MPWSAFARRCGMRGVLGSRD--VVSVPRDTQISTMEQIH-APLLIRNFSSEGDTGTAVGAMVKCLLSSALSASYYGFEACMGAGVPR---LDDDWQYMPLSDRLSQKAAEIY--RRVAAAGGQQELVCVHVRRGDKVGSPDY-PHLDADTRPDALR-RLLPRLVQPGSSLYIATNEPHPARFFEPLGDVGRM 1122
            +R QC+ ++  ++  C               P F        E   PP     +PSP        AL E CRS++FLLW+RN  DY+AGH H++WSM C+  EA   +R L++D++A MD +H G        VEV +  W +  +L  LPA    W  F   CG  GVL      VV + RD   S ++     PL+++++  + D G  +       +        YG+  C     P      D ++   +S    Q+ AE+       AA     LVC+HVRRGDK+  P+Y P+LDA+TRP A+  +LLP  V  G+ L+IA+NE  P  FF PL +  R+
Sbjct:   84 ERSQCMEVKRYIEERCRNVTELLDPVSCTRKPFFRDKRWMDPEFAHPPSV---SPSP--------ALVESCRSRRFLLWSRNVLDYYAGHGHRTWSMSCAVSEAIASNRTLLWDNYAGMDKVHTGGV----SNVEVLMEHWINVHKLYDLPAGFQLWREFELECGQPGVLDGNQGHVVVMKRDEPFSVLQNYSDIPLVVKDW--DRDCGLYLDNKTPGCI------PLYGYGVCHDPDTPLGPYAQDSFERYLMSAAWVQRTAELIWDAMTVAASDTGNLVCLHVRRGDKIALPEYYPNLDAETRPAAIAAKLLPH-VPGGAILFIASNEDAPG-FFSPLREWYRV 404          
BLAST of mRNA_P-wetherbeei_contig2000.1.1 vs. uniprot
Match: A0A835Z745_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z745_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.420e-34
Identity = 118/323 (36.53%), Postives = 155/323 (47.99%), Query Frame = 1
Query:  319 LREDCRSQKFLLWTRNSGDYWAGHSHKSWSMECSFGEAANLSRVLVYDDFAAMDGLHVGRKPGPKEGVEVPIGAWHDDSELQKLP--AMPWSAFARRCGMRGVLG--SRDVVSVPRD-TQISTMEQIHAPLLIRNFS-SEGDTGTAVGAMVKCLLSSALSA--SYYGFEAC----------------------MGAGV-PRLDDDWQYMPL---------SDRLSQKAAEIYRRV---------AAAGGQQELVCVHVRRGDKVGSPD----YPHLDADTRPDALRRLLPRLVQPGSSLYIATNEPHPARFFEPLGDVGRMTA 1128
            L ++CRSQ+FLLWTRN  DY AGHSH ++S+ C+F EA  L+R LV D FA ++ LH G   G   G +VP  AW + + L KL    M +  FAR CG  GVL   S D V +P   T    +    APLL+R +   +GD   A        L SA  A  S +GF+ C                      +  G+  R+  +W Y            + R    AA     V         AAA     +VC+HVRRGDK+ +P+    YP LD DT P  + R +   V  GS+L+IATNE  P  FF PL    R+T+
Sbjct:  313 LVQECRSQRFLLWTRNWLDYNAGHSHTTFSLSCAFWEAQRLNRTLVLDSFAGINKLHFG---GNFHG-DVPYKAWFNPACLSKLDRGGMFYHEFARGCGAPGVLPEESGDAVVMPSGATHAEMLAHADAPLLVRQWQYDQGDYAAAA-------LRSAPDAFTSRFGFQVCHRPERARADYPSVFKEPGVDYALPPGIWSRIYSEWVYRTAKVIAGDLWRTTRARGDAAAAAAAVDSAQHGAAPAAAAVTGMVVCLHVRRGDKITNPNVSKKYPDLDFDTSPAGIYRTISLYVPDGSTLFIATNERDPVAFFRPLEAHYRVTS 624          
BLAST of mRNA_P-wetherbeei_contig2000.1.1 vs. uniprot
Match: A0A835Z0A5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0A5_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.210e-26
Identity = 96/326 (29.45%), Postives = 139/326 (42.64%), Query Frame = 1
Query:  331 CRSQKFLLWTRNSGDYWAGHSHKSWSMECSFGEAANLSRVLVYDDFAAMDGLHVGRKPGPKEGVEVPIGAWHDDSELQKLPA--MPWSAFARRCGMRGV-------------------------LGSRDVVS-----------VPRDTQISTMEQIHA--------PLLIRNFSSEGDTGTAVGAMVKCLLSSALSASYYGFEAC-----------MGAGVPRLDDDWQYMPLSDRLSQKAAEIYRRVAAAGGQQE-----LVCVHVRRGDKVGSPD----YPHLDADTRPDALRRLLPRLVQPGSSLYIATNEPHPARFFEPLGD 1110
            CRSQ+F+LWTRNS D+  GHSHK +S+ C+F EA +L+R LV D F  M  +H           EVP   W+    L++  A  M +  F R CG  GV                         +G R +++           VP D  +      HA        PLL+R++  + D   A              A  +GF+ C            GA  P +D  +       + +    ++ R + +   + +     + C+HVRRGDKV        YP+LD DT P+ +RR +   + PGS+LY ATN+     FF PL D
Sbjct:   92 CRSQRFMLWTRNSMDHEVGHSHKWYSLHCAFWEAYSLNRTLVLDSFLGMSRIHADED----YNAEVPYPVWYSTKGLERARAGAMFYHDFVRDCGAPGVFHVLSSLVAVLSVCTXXXXXXXXXXVGGRGILATASGAATAAAAVP-DVALMPSGSTHADMAARADVPLLVRHWDHD-DRSNATR-----------PAFRFGFQVCHPPETADARYPTGAREPGVDYSFPRKLWGKKYAPWVYDMARYILSDMWKDKKPGLKIACIHVRRGDKVELESQKQRYPNLDYDTSPEGIRRTIKPWLNPGSTLYFATNQKDAKAFFAPLED 400          
BLAST of mRNA_P-wetherbeei_contig2000.1.1 vs. uniprot
Match: A0A836CEQ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEQ0_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.360e-20
Identity = 83/255 (32.55%), Postives = 114/255 (44.71%), Query Frame = 1
Query:  409 MECSFGEAANLSRVLVYDDFAAMDGLHVGRKPGPKEGVEVPIGAWHDDSELQKLPA--MPWSAFARRCGMRGVLGSR--DVVSVPRDTQISTM-EQIHAPLLIRNFSSEGDTGTAVGAMVKCLLSSALSASYYGFEACMGAGVPRLDDDWQYMPLSDRLSQK--AAEIYRRVAA------------AGGQQELVCVHVRRGDKV----GSPDYPHLDADTRPDALRRLLPRLVQPGSSLYIATNEPHPARFFEPL 1104
            M C+F EA  L+R LV D FA M   H   +      VE P  AW+       LPA  M +  F ++CG  GVL     DVV +P     + M  Q  APLL+R +            + +         + +G + C     P   ++     L D+L  K  A  +YR V +            A     +VC+HVRRGDK+    G   YP+LD +T P+ + + +   V  GS LYIATN+  P  FFEPL
Sbjct:    1 MSCAFWEANALNRTLVIDSFAGMFKGHTQTE----FSVEAPFAAWYSVKVFDLLPAGGMLYHQFVQKCGAPGVLQQALGDVVIMPSGASHADMVAQAGAPLLVREWDQREQQLEPATPLDE-------QQAKFGLQVCHKK--PEQQEEGLDYSLPDKLWSKWYAKWVYRAVDSIMSDMRQAAELNAASNALVVCLHVRRGDKITSRIGQFRYPNLDYETSPEGILKAIELFVPHGSVLYIATNQEDPVAFFEPL 242          
BLAST of mRNA_P-wetherbeei_contig2000.1.1 vs. uniprot
Match: A0A836CHA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHA1_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.130e-20
Identity = 86/296 (29.05%), Postives = 126/296 (42.57%), Query Frame = 1
Query:  325 EDCRSQKFLLWTRNSGDYWAGHSHKSWSMECSF-------GEAANLSRVLVYDDFAAMDGLHVGRKPGPKEGVEVPIGAWHDDSELQKLP--AMPWSAFARRCGMRGVL--GSRDVVSVPRDTQISTMEQIHA--------PLLIRNFSSEG------DTGTAVGAMVKCLLSSALSASY--------------YGFEACMGAGVP-----------------------RLDDDWQYMPLSDRLSQKAAEIYRRVAAAGGQQELVCVHVRRGDKVGSPD----YPHLDADTRPDAL 1014
            E+CR++++LLWTRN+ D++AGH HK +S+ C+         EA  L R LV D F  +D  H+G +       +VP  AW++ + +  LP   + W  F + CG  G+L  GS DV     D  +      HA        PLL+R + +         T +   +  +  +  +++ +               YG++ C    VP                       R   DW Y      L    AE     AA G Q  +VCVHVRRGD V +P     YP LD DT  +A+
Sbjct:  195 EECRAKRYLLWTRNTLDFFAGHQHKWFSLSCALFXXXXXLWEAHRLGRTLVLDSFTGIDKTHIGGE----YHADVPFTAWYNSNAMAGLPQGGLFWHEFVQGCGAPGILQEGSGDVAVGTGDVAVVPPSASHADMLAHAGVPLLVREWDASALRRSATTTASLTDSSGRPDMRGSVTTTMPPXXXXXXXXXXXXYGYQVCHRPDVPSARWPKVVSEPGVDYSMPEGLKSRPYADWVYSTTRAMLDDLKAE----GAALGAQ--VVCVHVRRGDMVRAPGMRARYPSLDRDTFAEAI 480          
BLAST of mRNA_P-wetherbeei_contig2000.1.1 vs. uniprot
Match: A0A835ZJK4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJK4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.900e-18
Identity = 64/177 (36.16%), Postives = 94/177 (53.11%), Query Frame = 1
Query:  592 FARRCGMRGVL--GSRDVVSVPRDTQISTME-QIHAPLLIRNFSSEGDTGTAVGAMVKCLLSSALSASYYGFEACMGAGVP-RLDDDWQYMPLSDRLSQKA-AEIYRRVAAAGGQQELV-CVHVRRGDKVGSPDYPHLDADTRPDALRRLLPRLVQPGSSLYIATNEPHPARFFEPL 1104
            FAR CG  GVL   ++D+  +P     S M  + H PLL+R++          G  + C   SA + S  G +  + AG+  R      Y P  DR++ +  AE+ +R A    +  LV C+HVRRGDK+    YP+L+ +T P+ + + +   V  GS LY+ATNEP P  +FEPL
Sbjct:   18 FARECGAPGVLQEANQDLAIMPSGASHSDMAAKAHVPLLVRSWDQGLQPAEKYGYRI-CRHRSAAAQSESGVDYTLPAGLGGRAYAPHAYAPWVDRMTARVWAELQKRAALNAREDALVVCLHVRRGDKLSYTKYPNLNYETSPEGILKTIEPHVPHGSVLYLATNEPDPVAYFEPL 193          
BLAST of mRNA_P-wetherbeei_contig2000.1.1 vs. uniprot
Match: A0A2R6QTQ8_ACTCC (O-fucosyltransferase family protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QTQ8_ACTCC)

HSP 1 Score: 84.0 bits (206), Expect = 2.790e-13
Identity = 76/262 (29.01%), Postives = 111/262 (42.37%), Query Frame = 1
Query:  334 RSQKFLLWTRNSGDYWAGHSHKSWSMECSFGEAANLSRVLVYDDFAAMDGLHVGRKPGPKEGVEVPIGAWHDDSELQKLPAM-----------PWS-AFARRCGMRGVLGSRDV-VSVPRDTQISTMEQIHAPLLIRNFSSEGDTGTAVGAMVKCLLSSALSASYYGFEACMGAGVPRLDDDWQYMPLSDRLSQKAAEIYRRVAAAGGQQELVCVHVRRGDKVGSPD-YPHLDADTRPDALRRLLPRLVQPGSSLYIATNEP 1077
            R  K+L ++R  GDY  G +H  WS  C+ GEA  L+R LV D    +   + G K   +EG +     + D   L++  ++            W  A  ++  +R V  S+   + + +D       Q  AP        E D                     Y +  C G     ++  W  +  S RL    +EI  R+       +   VHV RG+K  + + +PHLDADT PDAL   L  +VQP  +LYIATNEP
Sbjct:  251 RKGKYLYYSRG-GDYCKGMNHYLWSFLCALGEAQYLNRTLVMDLSICLAATYTGSKKD-EEGKDFRF--YFDFEHLKEEASIVEEGEFVGDWKKWDKAHKKKIPVRKVASSKVTPMQLKKDKSTIIWRQFDAP--------EPDN--------------------YWYRVCEGQAAKYIERPWHTLWKSKRLMNIVSEISGRM-----DWDFDAVHVVRGEKAQNKELWPHLDADTSPDALVPKLQGMVQPWRNLYIATNEP 475          
BLAST of mRNA_P-wetherbeei_contig2000.1.1 vs. uniprot
Match: A0A0D2UDF7_GOSRA (O-fucosyltransferase family protein n=29 Tax=Malvaceae TaxID=3629 RepID=A0A0D2UDF7_GOSRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.500e-12
Identity = 70/251 (27.89%), Postives = 103/251 (41.04%), Query Frame = 1
Query:  334 RSQKFLLWTRNSGDYWAGHSHKSWSMECSFGEAANLSRVLVYDDFAAMDGLHVGRKPGPKEGVEVPIGAWHDDSELQKLPAMPWSAFARRCGMRGVLGSRDVVSVPRDTQISTMEQIHAPLLIRNFSSEGDTGTAVGAMVKCLLSSALSASYYGFEACMGAGVPRLDDDWQYMPLSDRLSQKAAEIYRRVAAAGGQQE--LVCVHVRRGDKVGSPD-YPHLDADTRPDALRRLLPRLVQPGSSLYIATNEP 1077
            R  K+L + R  GDY  G +H  WS  C  GEA  L+R  V D    +   +    P  ++        + D   L+++ ++   +   R   +   G +  V V + T          P+ ++      D  T +          A     Y +  C G     +   W  +  S RL     EI        GQ +     VHV RG+K  + + +PHLDADT PDAL   L  ++QP  +LYIATNEP
Sbjct:  250 RKGKYLYYARG-GDYCKGMNHYLWSFLCGLGEAMYLNRTFVMDLSVCLSATY---NPSNRDEEGKDFRFYFDFEHLKEVASVVEESEFLRGWKKWNRGRKRKVPVKKVTTYKV-----TPMQLKK-----DKSTIIWRQF-----DAPEPENYWYRVCEGQAAKYIQRPWHALWKSKRLMNIVTEI-------SGQMDWDFDAVHVVRGEKAQNKELWPHLDADTSPDALLTKLKEMIQPWRNLYIATNEP 474          
BLAST of mRNA_P-wetherbeei_contig2000.1.1 vs. uniprot
Match: UPI000B8CD258 (uncharacterized protein LOC110809515 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CD258)

HSP 1 Score: 80.1 bits (196), Expect = 4.600e-12
Identity = 72/254 (28.35%), Postives = 108/254 (42.52%), Query Frame = 1
Query:  334 RSQKFLLWTRNSGDYWAGHSHKSWSMECSFGEAANLSRVLVYDDFAAMDGLHVGRKPGPKEGVEVPIGAWHDDSELQKL-PAMPWSAFARRCGMRGVLGSRDV-VSVPRDTQISTMEQIH--APLLIRNFSS-EGDTGTAVGAMVKCLLSSALSASYYGFEACMGAGVPRLDDDWQYMPLSDRLSQKAAEIYRRVAAAGGQQELVCVHVRRGDKVGSPD-YPHLDADTRPDALRRLLPRLVQPGSSLYIATNEP 1077
            R  ++L ++R  GDY  G +H  WS  C  GEA  L+R  V D    +   +    P  K+        + D   L+++ P +    F R          R V V   +  +++ M+ +   + +L R F + E D                     Y +  C G     +   W  +  S RL    +EI  R+       +   VHV RG+K  + + +PHLDADT PDAL   L  ++QP  +LYIATNEP
Sbjct:  249 RKGRYLYYSRG-GDYCKGMNHYLWSYLCGLGEAIYLNRTFVMDLSVCLSATY---NPSNKDEDGKDFRFYFDFEHLKEVVPIVEDREFLRDWKKWDRTHKRKVPVKKVKTYKVTPMQLMKDKSTILWRQFDAPEPDN--------------------YWYRVCEGEAAKYIQRPWHALWKSKRLMNIVSEISGRM-----DWDFDAVHVVRGEKAQNKELWPHLDADTSPDALLAKLKEIIQPWRNLYIATNEP 473          
BLAST of mRNA_P-wetherbeei_contig2000.1.1 vs. uniprot
Match: A0A834G025_RHOSS (O-fucosyltransferase family protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834G025_RHOSS)

HSP 1 Score: 79.7 bits (195), Expect = 6.060e-12
Identity = 73/253 (28.85%), Postives = 103/253 (40.71%), Query Frame = 1
Query:  328 DCRSQKFLLWTRNSGDYWAGHSHKSWSMECSFGEAANLSRVLVYDDFAAMDGLHVGRKPGPKEGVEVPIGAWHDDSELQKLPAMPWSAFARRCGMRGVLGSRDVVSVPRDTQISTMEQIHAPLLIRNFSSEGDTGTAVGAMVKCLLSSALSASYYGFEACMGAGVPRLDDDWQYMPLSDRLSQKAAEIYRRVAAAGGQQE--LVCVHVRRGDKVGSPD-YPHLDADTRPDALRRLLPRLVQPGSSLYIATNEP 1077
            D R  K+L ++R  GDY  G +H  WS  C+ GEA  L+R  V D    +   H   K   +EG +     ++D   L++      S               D     +  Q+  +    A   +     + D  T +          A     Y +  C G     +   W  +  S RL    +EI        GQ +     VHV RG+K  + + +PHLDADT PDAL   L  +VQP  +LYIATNEP
Sbjct:  244 DFRKGKYLYYSRG-GDYCKGMNHYLWSFLCALGEAQYLNRTFVMDLSICLSATHTASKKD-EEGKDFRF--YYDFEHLKEA-----SEIVEEGEFLKDWKKWDNTHKKKKIQVRKV----ASYKVTPMQLKKDKSTIIWRQF-----DAPEPENYWYRVCEGQAANYIQRPWHALWKSKRLMNIVSEI-------SGQMDWDFDAVHVVRGEKAQNKELWPHLDADTWPDALVTKLQGIVQPWRNLYIATNEP 471          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2000.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8D5_9STRA1.180e-3733.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z745_9STRA2.420e-3436.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0A5_9STRA4.210e-2629.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEQ0_9STRA1.360e-2032.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHA1_9STRA3.130e-2029.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZJK4_9STRA1.900e-1836.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2R6QTQ8_ACTCC2.790e-1329.01O-fucosyltransferase family protein n=1 Tax=Actini... [more]
A0A0D2UDF7_GOSRA1.500e-1227.89O-fucosyltransferase family protein n=29 Tax=Malva... [more]
UPI000B8CD2584.600e-1228.35uncharacterized protein LOC110809515 n=1 Tax=Caric... [more]
A0A834G025_RHOSS6.060e-1228.85O-fucosyltransferase family protein n=1 Tax=Rhodod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2000contigP-wetherbeei_contig2000:1966..6317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3827.XP_004504323.1
PFAMsO-FucT
Model size1859
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons11
Evalue9.99e-15
EggNOG OGs28P4T@1|root,2QV1M@2759|Eukaryota,37JYI@33090|Viridiplantae,3GFB4@35493|Streptophyta,4JEDG@91835|fabids
DescriptionGDP-fucose protein O-fucosyltransferase
Cds size987
COG categoryG
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2000.1.1prot_P-wetherbeei_contig2000.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2000 3559..6164 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.0270014-UTR-P-wetherbeei_contig2000:1965..22961683186188.0270014-UTR-P-wetherbeei_contig2000:1965..2296Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2000 1966..2296 -
1683186188.0378196-UTR-P-wetherbeei_contig2000:2519..25951683186188.0378196-UTR-P-wetherbeei_contig2000:2519..2595Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2000 2520..2595 -
1683186188.048217-UTR-P-wetherbeei_contig2000:2839..30261683186188.048217-UTR-P-wetherbeei_contig2000:2839..3026Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2000 2840..3026 -
1683186188.0617476-UTR-P-wetherbeei_contig2000:3173..32401683186188.0617476-UTR-P-wetherbeei_contig2000:3173..3240Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2000 3174..3240 -
1683186188.0697434-UTR-P-wetherbeei_contig2000:3500..35581683186188.0697434-UTR-P-wetherbeei_contig2000:3500..3558Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2000 3501..3558 -
1683186188.164515-UTR-P-wetherbeei_contig2000:6164..63171683186188.164515-UTR-P-wetherbeei_contig2000:6164..6317Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2000 6165..6317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.0773313-CDS-P-wetherbeei_contig2000:3558..37511683186188.0773313-CDS-P-wetherbeei_contig2000:3558..3751Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2000 3559..3751 -
1683186188.092402-CDS-P-wetherbeei_contig2000:4021..41961683186188.092402-CDS-P-wetherbeei_contig2000:4021..4196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2000 4022..4196 -
1683186188.104771-CDS-P-wetherbeei_contig2000:4399..45321683186188.104771-CDS-P-wetherbeei_contig2000:4399..4532Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2000 4400..4532 -
1683186188.1240556-CDS-P-wetherbeei_contig2000:4902..50161683186188.1240556-CDS-P-wetherbeei_contig2000:4902..5016Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2000 4903..5016 -
1683186188.1360898-CDS-P-wetherbeei_contig2000:5426..55661683186188.1360898-CDS-P-wetherbeei_contig2000:5426..5566Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2000 5427..5566 -
1683186188.1458197-CDS-P-wetherbeei_contig2000:5799..58611683186188.1458197-CDS-P-wetherbeei_contig2000:5799..5861Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2000 5800..5861 -
1683186188.1553872-CDS-P-wetherbeei_contig2000:5994..61641683186188.1553872-CDS-P-wetherbeei_contig2000:5994..6164Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2000 5995..6164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2000.1.1

>prot_P-wetherbeei_contig2000.1.1 ID=prot_P-wetherbeei_contig2000.1.1|Name=mRNA_P-wetherbeei_contig2000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=329bp
MWEDRQQCLSLRLGLKRHCPPLFAKSGRTFTECTRPPGTYWGAPSPDTTD
KELQALREDCRSQKFLLWTRNSGDYWAGHSHKSWSMECSFGEAANLSRVL
VYDDFAAMDGLHVGRKPGPKEGVEVPIGAWHDDSELQKLPAMPWSAFARR
CGMRGVLGSRDVVSVPRDTQISTMEQIHAPLLIRNFSSEGDTGTAVGAMV
KCLLSSALSASYYGFEACMGAGVPRLDDDWQYMPLSDRLSQKAAEIYRRV
AAAGGQQELVCVHVRRGDKVGSPDYPHLDADTRPDALRRLLPRLVQPGSS
LYIATNEPHPARFFEPLGDVGRMTASCF*
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mRNA from alignment at P-wetherbeei_contig2000:1966..6317-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2000.1.1 ID=mRNA_P-wetherbeei_contig2000.1.1|Name=mRNA_P-wetherbeei_contig2000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4352bp|location=Sequence derived from alignment at P-wetherbeei_contig2000:1966..6317- (Phaeothamnion wetherbeei SAG_119_79)
TCAGCTTTGGACTGTATCCTTTATTGCGGCTCTAGCCCAGATTTTTCACA ATTATCCAAGCCTGCTCGATCCGCTCTCTTCCGTTCACAATTCCAGGCCG CCTTCGAGCGTCACTTGCAGGACAGTGGCCTTCTAGGCCATGAGGCAACC ACCATGTGGGAGGATCGCCAGCAGTGCCTGTCGCTTCGGCTCGGCCTGAA GCGTCACTGTCCGCCGCTCTTCGCCAAGAGCGGTCGCACGTTCACTGAAT GCACGCGACCGCCTGGCACGTACTGGGGCGCGCCGTCTCCGGACACTACC GATAAAGAGCTCCAAGCATTAAGGTATGCTGCGATTTGGGTGCGCCATTT CTTTGACTGCTTTCAATGGCATTGTCTACCTTTCAATATGCCGTCATTTG TCAAACCATCAGTCCCAGCAATCCACATCTTCGTCTTCTTACTCTCCTTG GTGCAGGGAGGATTGCAGGTCACAGAAGTTTCTGCTGTGGACGCGGAACT CCGGGGACTACTGGGCGGGTAAGCGAGGTCGTGCATCCGTTTCCTTGTTC AGAGAGCTGGCGCATGCCTTCCGTAGTGTGGGGACCTCTTGCTAAAGCCG GCGAGACAATTCTCTCCGTGAGCCAGAGAAAAATTTAAATGCTGTGAAGG ATGGAGCAACCTCCCATCCTGGCCCCTTTTCCACCGCGCACGACCTTCGC AAGTGCCCTCGCGTCTCGTCTTAACCCGTTGCTCCGTGCCCGGCGTGGCA GGCCACTCGCACAAGAGCTGGAGCATGGAATGCAGCTTCGGCGAGGCGGC CAACCTCTCAAGGGTGCTCGTCTACGATGACTTCGCGGCGATGGACGGCC TCCACGTCGGCCGCAAGCCCGGGCCGAAGGAGGGCGTCGAGGTGAGGCGG AATTACTGGGAGAGAAGAAGGGAGAGGGAAACGAAGGGCGCAACGGAGAT CTCCGCAAGGAGGTCGAGGCGACAACATAAGTTATCTCTTGGGAAGCCTG CCCCGTGGAAAGGCCACTTTGTTACGTGAGTGGGAAGCAAGCGTCTAGAC CCGCGTGCCGGGTCGCGCATGCGGTAGGGCGTTGAATGTAAAAGATGAGT GCAGTGTTGAAAGAAAGGCTTTTGTCTGCTTATGTGGTAGCAGAAAGGCG GCCGGCGGCCTGCTGTCCATTCTCCTACTTGTTGGAGCTGCTGTCATGTG GTGTCGCTGCATGCCCTCCCGTGTCATCCTTGCAAAGTCGCGACGCATTG CTGAAGTGCTAGCTGACGCAAGCCCTGTCAGCTGCTGATCGCCGTTCGCA GGTCCCCATCGGGGCGTGGCACGATGACAGCGAGCTCCAAAAGCTGCCTG CCATGCCGTGGAGCGCCTTCGCTCGGCGTTGCGGGATGCGGGGTGTGCTC GGTTCGCGTGATGTGGTGAGCACGCGAGCGCTACAGCCGAAGAATGAAAG CGGGAAGAACAAAAGCAAAGCAGCGCCAGTCGGCTTTTGCTTTTTCGGGT TTCTTCCTTGGCAGCGCTTGCTCTCTGCTCTTTGCACGACGGATGTCTGA TTTGGCGCCGCGCTTGAACCGATGCATCATTCTCATCAATATCTTCTTTC GATCTAGTCAACTTTTGTGTTCGTGCCTTTCTGTTCAACTTTTGGTCCTC GTCTTGGATGCTGCCACCGCCGCCGCCGCCGTCTCGATCGCAACCGCCAC CCCGCCGTCGCAACTGCTGCCGTCCCGCCATTGCCGTTGCTGCTGCCACT CCATCGTCGCTGCTACTACCGCCGTCCTTGAGCAGGTAAGCGTGCCGAGG GACACGCAAATCTCGACGATGGAGCAAATACACGCACCACTGTTGATACG AAACTTCTCTTCTGAGGGAGACACAGGTACCGCGGTTGGTGCGATGGTGA AGTGTTTACTATCCTCAGGTACGAAACTCTACTCCAAGAAGTGCGACCAT GAGTTTTCACTGGCATTTAGCCGCCAACCATTCAGCAGCGATCTGAAAAG GCTTTGCCTGGTTCGTTGCAGGACCCACCAGCTGCTCTCTGCCTCCCAAC TGGAGACTGAGCGCTCCATCCCCTTCCTTGTTGCCGCATCCATCACCATG ACGGCGGCGGCACTCGCGCAGCCTTGTCAGCGTCGTATTACGGGTTCGAG GCGTGCATGGGGGCCGGCGTCCCGCGGCTGGACGACGACTGGCAATACAT GCCGCTGAGCGACAGGCTGAGCCAAAAGGCGGCAGAGATCTACCGCCGCG TTGCGGCTGCGGGCGGACAGCAGGAGTTGGTCTGCGTGCATGTCAGGTAA GGCATTGCCCTTGAGTACCGGAATTGTATGCTGACACGAAATATGGAGGC GGGCTTCATTCTCGCTCTGTTCTGCCTAACAAGAATGTTGATGCGCGTGA GCAACGTGGCGCTTCACCAGCCAAAATCTTGTCCATCTCCCTTCACCACC AACTGCTTCCATCACGCATCTGCCGCTGCCCCTCTGTTTTTGCTCGGTTT TGCTCTTGTGCCGCATAATACCACCCCGGTCTCCTTCACCGATGTCCTTT CGTTTTCTGCGTACAGGCGCGGCGACAAAGTGGGCTCGCCGGATTACCCG CACCTCGATGCCGACACCCGCCCAGACGCGTTGCGCCGCTTGCTGCCGCG GCTCGTGCAGCCCGGTAGCTCCCTTTACATCGCCACCAATGAACCGCATC CTGCGCGCTTCTTCGAACCACTCGGAGATGTGGGGAGAATGACAGCTTCT TGTTTTTGAGAAAGTTTTGGGGGAGAAGTCTTACATCGGTTCATTGCTCC ACCCTTTGGGATGAACGGTAAGCGTGCCACCGTTGATATGGATGACAGAA ATTGAGGCAGCGGACGGGAGGTGGCGGGCTGAGAGCCGGATGATTTGCGA TGTAATGCATACCTCGCTTTCGCTCTGTGTACTTCCCAGCTGGCGCCGTT TAGCACGAAGCATAGGCTATCTTCCAGAATTACTGTTTGCTCATCTTTCT TCCTCACGCCTCTCACCACACTTATCGGTGCCTCTCTGATGGTTCTTCTT GCTGTGGTGCATCGCCCGCCAGAGCAGATGTACCGCATTCAAACTTACGA GGACCGCAAAGATCTGATTAAGGGACTGCTGCCCAGTACCGTCGGTAAGC CGTCTTTAGGCCGCTCTAAGACTGTTCTTGTCCCAACTGCCGCAATCAGT TTAAAGAATTGCTGTTGCCGGAGAGAGTCCGCGCAAATGGCCTGACAGAA TACGCCACTGGCTGTGAAACCAACGTCCGCTGATTGTGCAGGCCTCATTG AATACGCCGTTTTAGACGGCTGTCCGCGGAAGATACCGACTTTTCGGGAC GAGTGGCCGGAGGGATTCCCAGAGGGCACTTCACTCACATCAGATTGCAA GGAGCCGGCGAACTGTTGGTAGCAGGATCTTTCCCGTTGGTGGAAGCGGT CCGGATTCTCTACACTGCGGAAGTGGACGTAAGTTACCACTTCTTGTCCC TTTTTCCGTCTTTCTTCTCTCCTTTCTTCTCTCTTTTTCCCTCGGCCTGG TGCCCGACTCCCTGTTCCTTCTCCATCAACGACCCGTCCATTGTGGTCTT CCGGGTTTGCTCGTTTTGTCGCCTGTCGCTTCATTCATTGCCACTCCTCT TACCAATAGCAGCGTCTCCTTCTCTATCCCTCTATTTTTCTATCGTTGTC ATTTTCCCATTCCTTATACAAGCTGATTTTGCGTCGGGAGGCGGCGGGGA CGGCAAGCTTCGGTGGAGGCTACAGAAGTAAGCTACGCGGCGCCGCAGGT AATTTAGACAGTTTGCCATCTGACATGCTCTGCTGGCTTGCTGAGGGTAT AAGATGGATCAACGGATAGTACAAAGCCAACAGCATATTGACCTTTCTCT TTAGGTCTGCTAGGTCATATTGCCACTAGGTCCATCACTTTTGGAGTCTC CGTCCTCTTCACGGCTGTTCCCTTGCTTCGCTGCCATGCTTCCATGCTGC TCTCCCCGCAAGACGCTGCAGGGAATGATCAGGAGTACAGTGGTGGTGCG TTCAACATGATATTCGGCTGCGACGGTAATGACAGGTGCGGCAATGGCAC GAAAGAAAATAAACATTAAACCTCAATTTCCCCGTCTTGCGTTCCTGCCT TGTGCCTGGTGAACGGGAAGCTGGTGCAGGCTGACGCACTAGCCGCAGCT GCTGTTCCCGCAACACATGGGTGAAAAGACGAGGGGTACGCGCCAGCAGC ATGGGTTACTTCCGCGTCTTTTTCAAAGGAGGCGGTTTCGGGGTTGGAGG CGGCAACAAATAGTGAGCAATAAGAAAGAAACATTGATATTATTTACGCA GC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2000:1966..6317-

>mRNA_P-wetherbeei_contig2000.1.1 ID=mRNA_P-wetherbeei_contig2000.1.1|Name=mRNA_P-wetherbeei_contig2000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=987bp|location=Sequence derived from alignment at P-wetherbeei_contig2000:1966..6317- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGGAGGATCGCCAGCAGTGCCTGTCGCTTCGGCTCGGCCTGAAGCG
TCACTGTCCGCCGCTCTTCGCCAAGAGCGGTCGCACGTTCACTGAATGCA
CGCGACCGCCTGGCACGTACTGGGGCGCGCCGTCTCCGGACACTACCGAT
AAAGAGCTCCAAGCATTAAGGGAGGATTGCAGGTCACAGAAGTTTCTGCT
GTGGACGCGGAACTCCGGGGACTACTGGGCGGGCCACTCGCACAAGAGCT
GGAGCATGGAATGCAGCTTCGGCGAGGCGGCCAACCTCTCAAGGGTGCTC
GTCTACGATGACTTCGCGGCGATGGACGGCCTCCACGTCGGCCGCAAGCC
CGGGCCGAAGGAGGGCGTCGAGGTCCCCATCGGGGCGTGGCACGATGACA
GCGAGCTCCAAAAGCTGCCTGCCATGCCGTGGAGCGCCTTCGCTCGGCGT
TGCGGGATGCGGGGTGTGCTCGGTTCGCGTGATGTGGTAAGCGTGCCGAG
GGACACGCAAATCTCGACGATGGAGCAAATACACGCACCACTGTTGATAC
GAAACTTCTCTTCTGAGGGAGACACAGGTACCGCGGTTGGTGCGATGGTG
AAGTGTTTACTATCCTCAGCCTTGTCAGCGTCGTATTACGGGTTCGAGGC
GTGCATGGGGGCCGGCGTCCCGCGGCTGGACGACGACTGGCAATACATGC
CGCTGAGCGACAGGCTGAGCCAAAAGGCGGCAGAGATCTACCGCCGCGTT
GCGGCTGCGGGCGGACAGCAGGAGTTGGTCTGCGTGCATGTCAGGCGCGG
CGACAAAGTGGGCTCGCCGGATTACCCGCACCTCGATGCCGACACCCGCC
CAGACGCGTTGCGCCGCTTGCTGCCGCGGCTCGTGCAGCCCGGTAGCTCC
CTTTACATCGCCACCAATGAACCGCATCCTGCGCGCTTCTTCGAACCACT
CGGAGATGTGGGGAGAATGACAGCTTCTTGTTTTTGA
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