mRNA_P-wetherbeei_contig19975.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19975.3.1
Unique NamemRNA_P-wetherbeei_contig19975.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19975.3.1 vs. uniprot
Match: A0A7C1WYH3_9GAMM (Response regulator (Fragment) n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C1WYH3_9GAMM)

HSP 1 Score: 123 bits (309), Expect = 1.390e-33
Identity = 60/85 (70.59%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   34 VLLVDDQAIVAEAIRRLLEDEVGIVFHYCQDPAKALEVAAQVRPTLILLDLVMPGVDGMTLVRFFHAHPKLRRVPIIVLSSKEDP 288
            VLLVDDQ IVAEAIRR+LE E  I FHYC+DP KA+EVA +V+PT IL DLVMP +DGMTLV F+  HP L+  P+IVLSSKEDP
Sbjct:   20 VLLVDDQLIVAEAIRRMLESEPSITFHYCRDPKKAVEVALEVKPTTILQDLVMPDIDGMTLVHFYRNHPALKSTPVIVLSSKEDP 104          
BLAST of mRNA_P-wetherbeei_contig19975.3.1 vs. uniprot
Match: UPI00159E76AB (SpoIIE family protein phosphatase n=1 Tax=Desulfolutivibrio sulfoxidireducens TaxID=2773299 RepID=UPI00159E76AB)

HSP 1 Score: 125 bits (314), Expect = 2.030e-32
Identity = 58/85 (68.24%), Postives = 73/85 (85.88%), Query Frame = 1
Query:   34 VLLVDDQAIVAEAIRRLLEDEVGIVFHYCQDPAKALEVAAQVRPTLILLDLVMPGVDGMTLVRFFHAHPKLRRVPIIVLSSKEDP 288
            VLLVDDQA++ EA+RR+L  E  I FH+CQDPAKAL +AA++ PT+IL DLVMPG+DG+TLV+FF AHP LR VP+IVLS+KE+P
Sbjct:   22 VLLVDDQAMIGEAVRRMLAPEADIAFHFCQDPAKALHMAAELSPTIILQDLVMPGIDGLTLVKFFRAHPTLRDVPLIVLSTKEEP 106          
BLAST of mRNA_P-wetherbeei_contig19975.3.1 vs. uniprot
Match: A0A7K3NGB8_9DELT (SpoIIE family protein phosphatase n=1 Tax=Desulfovibrio sulfodismutans TaxID=63561 RepID=A0A7K3NGB8_9DELT)

HSP 1 Score: 123 bits (308), Expect = 1.460e-31
Identity = 57/89 (64.04%), Postives = 76/89 (85.39%), Query Frame = 1
Query:   22 NAPVVLLVDDQAIVAEAIRRLLEDEVGIVFHYCQDPAKALEVAAQVRPTLILLDLVMPGVDGMTLVRFFHAHPKLRRVPIIVLSSKEDP 288
            +A  VLL+DDQA+VAEA+RR+L DE GIVFH+CQDPAKA++ A ++ PT+IL DLVMP +DG+TLV+FF   PKL+ +P+IVLS+KE+P
Sbjct:   17 HAVTVLLIDDQAMVAEAVRRMLADEPGIVFHFCQDPAKAIQTAERLLPTVILQDLVMPDIDGLTLVKFFRNRPKLKDIPLIVLSTKEEP 105          
BLAST of mRNA_P-wetherbeei_contig19975.3.1 vs. uniprot
Match: A0A2A4WCD0_9GAMM (Diguanylate cyclase response regulator n=2 Tax=root TaxID=1 RepID=A0A2A4WCD0_9GAMM)

HSP 1 Score: 120 bits (300), Expect = 8.490e-31
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    7 ESLNVNAPVVLLVDDQAIVAEAIRRLLEDEVGIVFHYCQDPAKALEVAAQVRPTLILLDLVMPGVDGMTLVRFFHAHPKLRRVPIIVLSSKEDP 288
            ES   +  VVLLVDDQ +VAEAIRR+L DE  I FHYC DP KA+E+AA++ PT IL DLVMP +DGMTL+R +  HP L   P+IVLSSKEDP
Sbjct:   11 ESKAADEVVVLLVDDQQMVAEAIRRMLADEPNITFHYCSDPKKAVEMAAEIAPTTILQDLVMPDIDGMTLLRAYRNHPVLNNTPVIVLSSKEDP 104          
BLAST of mRNA_P-wetherbeei_contig19975.3.1 vs. uniprot
Match: A0A3A4WVM2_9DELT (Response regulator n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4WVM2_9DELT)

HSP 1 Score: 120 bits (300), Expect = 2.040e-30
Identity = 59/94 (62.77%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    4 SESLNVNAPVVLLVDDQAIVAEAIRRLLEDEVGIVFHYCQDPAKALEVAAQVRPTLILLDLVMPGVDGMTLVRFFHAHPKLRRVPIIVLSSKED 285
            S  L+ +   VLLVDDQ I+ EA+RR+L  E  IVFHYCQDPAKA+++AA++ PT+IL DLVMP VDG+TLV+FF  H KL+ VP+IVLSSKE+
Sbjct:    2 SAGLSRHGITVLLVDDQPIIGEAVRRMLAPEKDIVFHYCQDPAKAIKMAAELSPTVILQDLVMPEVDGLTLVKFFRGHKKLKEVPLIVLSSKEE 95          
BLAST of mRNA_P-wetherbeei_contig19975.3.1 vs. uniprot
Match: A0A811GT86_9BURK (Protein-glutamate methylesterase/protein-glutamine glutaminase n=9 Tax=Alcaligenaceae TaxID=506 RepID=A0A811GT86_9BURK)

HSP 1 Score: 119 bits (297), Expect = 2.190e-30
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    1 VSESLNVNAPVVLLVDDQAIVAEAIRRLLEDEVGIVFHYCQDPAKALEVAAQVRPTLILLDLVMPGVDGMTLVRFFHAHPKLRRVPIIVLSSKEDP 288
            VS  LN +  +VLLVDDQ +V EAIRR L  E  I FHYC DP KAL VA Q RPT+IL DLV+PGVDG++LVR +  HP  R +PIIVLS+KEDP
Sbjct:    9 VSADLNSHGAMVLLVDDQVMVGEAIRRALVPEANIDFHYCSDPYKALSVAIQTRPTVILQDLVLPGVDGLSLVREYRGHPVTRDIPIIVLSTKEDP 104          
BLAST of mRNA_P-wetherbeei_contig19975.3.1 vs. uniprot
Match: A0A0U5JEA4_9BACT (Response regulatory domain-containing protein n=1 Tax=Candidatus Protochlamydia naegleriophila TaxID=389348 RepID=A0A0U5JEA4_9BACT)

HSP 1 Score: 119 bits (297), Expect = 7.110e-30
Identity = 56/85 (65.88%), Postives = 71/85 (83.53%), Query Frame = 1
Query:   34 VLLVDDQAIVAEAIRRLLEDEVGIVFHYCQDPAKALEVAAQVRPTLILLDLVMPGVDGMTLVRFFHAHPKLRRVPIIVLSSKEDP 288
            VLL+DDQAI+AEAI+R L D+  I FHYC DP KALEVA++V+PT+IL DLVMPG DG+ LV++F A+P  + +PIIVLS+KEDP
Sbjct:   24 VLLIDDQAIIAEAIKRQLADQTDIDFHYCSDPTKALEVASEVKPTVILQDLVMPGCDGLLLVKYFRANPATKDIPIIVLSTKEDP 108          
BLAST of mRNA_P-wetherbeei_contig19975.3.1 vs. uniprot
Match: A0A522X4S1_9PROT (Diguanylate cyclase n=1 Tax=Gallionella sp. TaxID=2052161 RepID=A0A522X4S1_9PROT)

HSP 1 Score: 117 bits (293), Expect = 9.930e-30
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 1
Query:   16 NVNAPVVLLVDDQAIVAEAIRRLLEDEVGIVFHYCQDPAKALEVAAQVRPTLILLDLVMPGVDGMTLVRFFHAHPKLRRVPIIVLSSKEDP 288
            N++ PVVLLVDDQ IVAEAIRR+L DE  I FHYCQ+PA+A+  A ++RPT+IL DLVMP VDG TL++F+  +P     P+IVLSS+EDP
Sbjct:   17 NLSHPVVLLVDDQTIVAEAIRRMLADETDIEFHYCQEPARAVGKANEIRPTIILQDLVMPEVDGYTLLKFYRGNPATSGTPVIVLSSREDP 107          
BLAST of mRNA_P-wetherbeei_contig19975.3.1 vs. uniprot
Match: A0A2N2JZ40_9DELT (Response regulator n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A2N2JZ40_9DELT)

HSP 1 Score: 118 bits (295), Expect = 1.050e-29
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    4 SESLNVNAPVVLLVDDQAIVAEAIRRLLEDEVGIVFHYCQDPAKALEVAAQVRPTLILLDLVMPGVDGMTLVRFFHAHPKLRRVPIIVLSSKED 285
            S +L  +   VLLVDDQ IV EA+RR+L  E  IVFHYCQDP  A+++A  + PT+IL DLVMP VDG+TLVRFF AH KLR VP+IVLSSKE+
Sbjct:    2 SAALGQHEITVLLVDDQPIVGEAVRRMLAPEKDIVFHYCQDPTAAIKMATNISPTVILQDLVMPEVDGLTLVRFFRAHQKLRDVPLIVLSSKEE 95          
BLAST of mRNA_P-wetherbeei_contig19975.3.1 vs. uniprot
Match: A0A6S7DGU8_9BURK (Protein-glutamate methylesterase/protein-glutamine glutaminase n=75 Tax=Alcaligenaceae TaxID=506 RepID=A0A6S7DGU8_9BURK)

HSP 1 Score: 117 bits (292), Expect = 1.280e-29
Identity = 60/95 (63.16%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    4 SESLNVNAPVVLLVDDQAIVAEAIRRLLEDEVGIVFHYCQDPAKALEVAAQVRPTLILLDLVMPGVDGMTLVRFFHAHPKLRRVPIIVLSSKEDP 288
            S  LN +A +VLLVDDQ +V EAIRR L  E  I FHYC DP KAL VA Q RPT+IL DLV+PGVDG++LV+ +  HP  R +PIIVLS+KEDP
Sbjct:   10 SADLNAHAAMVLLVDDQVMVGEAIRRALATEGNIDFHYCSDPYKALTVAIQTRPTVILQDLVLPGVDGLSLVKEYRNHPVTRDIPIIVLSTKEDP 104          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19975.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1WYH3_9GAMM1.390e-3370.59Response regulator (Fragment) n=1 Tax=Chromatiales... [more]
UPI00159E76AB2.030e-3268.24SpoIIE family protein phosphatase n=1 Tax=Desulfol... [more]
A0A7K3NGB8_9DELT1.460e-3164.04SpoIIE family protein phosphatase n=1 Tax=Desulfov... [more]
A0A2A4WCD0_9GAMM8.490e-3163.83Diguanylate cyclase response regulator n=2 Tax=roo... [more]
A0A3A4WVM2_9DELT2.040e-3062.77Response regulator n=1 Tax=Desulfobacteraceae bact... [more]
A0A811GT86_9BURK2.190e-3063.54Protein-glutamate methylesterase/protein-glutamine... [more]
A0A0U5JEA4_9BACT7.110e-3065.88Response regulatory domain-containing protein n=1 ... [more]
A0A522X4S1_9PROT9.930e-3062.64Diguanylate cyclase n=1 Tax=Gallionella sp. TaxID=... [more]
A0A2N2JZ40_9DELT1.050e-2963.83Response regulator n=2 Tax=unclassified Deltaprote... [more]
A0A6S7DGU8_9BURK1.280e-2963.16Protein-glutamate methylesterase/protein-glutamine... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19975contigP-wetherbeei_contig19975:965..1252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1444711.CCJF01000004_gene2414
PFAMsResponse_reg,SpoIIE
Model size288
Max annot lvl204428|Chlamydiae
KEGG koko:K07315
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.17e-30
EggNOG OGsCOG2199@1|root,COG2208@1|root,COG2208@2|Bacteria,COG3706@2|Bacteria,2JGTM@204428|Chlamydiae
EC3.1.3.3
DescriptioncheY-homologous receiver domain
Cds size288
COG categoryT
BRITEko00000,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186186.558599-CDS-P-wetherbeei_contig19975:964..12521683186186.558599-CDS-P-wetherbeei_contig19975:964..1252Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19975 965..1252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19975.3.1prot_P-wetherbeei_contig19975.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19975 965..1252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19975.3.1

>prot_P-wetherbeei_contig19975.3.1 ID=prot_P-wetherbeei_contig19975.3.1|Name=mRNA_P-wetherbeei_contig19975.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
VSESLNVNAPVVLLVDDQAIVAEAIRRLLEDEVGIVFHYCQDPAKALEVA
AQVRPTLILLDLVMPGVDGMTLVRFFHAHPKLRRVPIIVLSSKEDP
back to top

mRNA from alignment at P-wetherbeei_contig19975:965..1252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19975.3.1 ID=mRNA_P-wetherbeei_contig19975.3.1|Name=mRNA_P-wetherbeei_contig19975.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig19975:965..1252+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTCGGAAAGCTTAAATGTAAACGCTCCGGTCGTGCTTTTGGTGGACGA CCAGGCCATCGTCGCGGAAGCCATTCGACGCCTTCTCGAAGATGAGGTTG GAATCGTTTTCCACTATTGCCAGGACCCCGCCAAGGCCCTCGAGGTCGCG GCCCAGGTCCGGCCAACCTTGATTTTGCTCGACCTTGTCATGCCCGGCGT CGACGGCATGACTCTGGTGCGATTTTTCCACGCCCATCCCAAGCTGCGCC GCGTGCCTATCATCGTGCTCTCGAGCAAGGAAGATCCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19975:965..1252+

>mRNA_P-wetherbeei_contig19975.3.1 ID=mRNA_P-wetherbeei_contig19975.3.1|Name=mRNA_P-wetherbeei_contig19975.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig19975:965..1252+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTCGGAAAGCTTAAATGTAAACGCTCCGGTCGTGCTTTTGGTGGACGA
CCAGGCCATCGTCGCGGAAGCCATTCGACGCCTTCTCGAAGATGAGGTTG
GAATCGTTTTCCACTATTGCCAGGACCCCGCCAAGGCCCTCGAGGTCGCG
GCCCAGGTCCGGCCAACCTTGATTTTGCTCGACCTTGTCATGCCCGGCGT
CGACGGCATGACTCTGGTGCGATTTTTCCACGCCCATCCCAAGCTGCGCC
GCGTGCCTATCATCGTGCTCTCGAGCAAGGAAGATCCA
back to top