mRNA_P-wetherbeei_contig19959.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19959.1.1
Unique NamemRNA_P-wetherbeei_contig19959.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19959.1.1 vs. uniprot
Match: A0A6B3STB7_9BURK (Porin n=1 Tax=Noviherbaspirillum galbum TaxID=2709383 RepID=A0A6B3STB7_9BURK)

HSP 1 Score: 119 bits (298), Expect = 1.010e-26
Identity = 131/393 (33.33%), Postives = 172/393 (43.77%), Query Frame = 1
Query:    4 AGAASAQSSSVTIYGTLQGDFQVAESKSADTSTVVSVNSARTAASFTATPANQSARTRSNPAGSNLGFRGTEDLGNGLSAWFQLEMSTTLGAPSGTPDGANHGNAPTWRNTAVGLRSNTWGTVSVGMWDTPFNLMAVSTGNVNGRIANATTGQQANLLGTTLFGQGAWSAQNESAACTGPAIGVASASCLNAGM--NFDRRQKQLLQWWSPNWNGFEARVAYAAVGFADGVTADS-RAAGSIKPSIWDLSLAYNNGPLAVGYAYSNQKNLLAYAAATAAATAYT-FALGGGNSIG---VGALWESLKWTANYATLVATDL---------TEMKKTAWRLQANYATGNHFFAFDYTKANDVKGSLAGAGVGFNGSGTEAKSYQLAYNYMLSKRT 1134
            AG+A AQ+ SVTIYG L  D +  ++     + V S                  AR  SN   S +GFRG EDLG G+ A FQLE S  L   SGT  G         RN+ VG+    +GT+ +G WDTP+                A+T +      TT+ G GA               G AS +  NA    +FDRRQ+ ++Q+W+PN  GF  R+AY       GV  +    A +  P +W LS AY  GPL +G A         YA    A T  T F L G  + G   V AL E L+++ N   L AT L         TE K   + L A +  G H       K+ ++K +L  A       GT+A+   L Y Y  SKRT
Sbjct:   15 AGSAHAQADSVTIYGRLNVDVESVKASGGSGAGVTST-----------------ARLTSNS--SLIGFRGEEDLGGGMKALFQLENSVGLDTGSGTFVG---------RNSGVGI-GGAYGTLIMGQWDTPYK---------------ASTTRLDPFGDTTIAGYGA------------VLYGDASNTAANAANRNSFDRRQRNVIQYWTPNVAGFSGRLAY-------GVNEEKGTCAVACDPKLWSLSAAYEQGPLFLGAAVEQHDE---YANTATARTQDTGFKLAGSYTFGATTVSALAERLRFSGN---LAATGLPKVFTVGAATEAKLDTFWLAAVHRIGAHNLRLALGKSRELKLNLGSA------PGTDARYVALGYGYTFSKRT 332          
BLAST of mRNA_P-wetherbeei_contig19959.1.1 vs. uniprot
Match: A0A7V8C0X8_9RHOO (Porin n=2 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7V8C0X8_9RHOO)

HSP 1 Score: 119 bits (299), Expect = 1.530e-26
Identity = 112/333 (33.63%), Postives = 150/333 (45.05%), Query Frame = 1
Query:  193 SNLGFRGTEDLGNGLSAWFQLEMSTTLGAPSGTPDGANHGNAPT--WRNTAVGLRSNTWGTVSVGMWDTPFNLMAVSTGNVNGRIANATTGQQA-NLLGTTLFGQGAWSAQNESAACTGPAIGVASASCLNAGMNFDRRQKQLLQWWSPNWNGFEARVAYAAVGFADGVTADSRAAGSI--KPSIWDLSLAYNNGPLAVGYAY---SNQKNLLAYAAATA---------AATAYTFALGGGNSIGVGALWE--SLKWTANYATLVATDLTEMKKTAWRLQANYATGNHFFAFDYTKANDVKGSLAGAGVGFNGSGTEAKSYQLAYNYMLSKRT 1134
            SN+ F GTE LG GL+AW+Q+E +      +GT     + N  +   RNTAVG++   WG V VG WD  ++ +A   GN  G +     G  + NLL             N+  A T  A G      LN+G     R    L + SP WNGF  R+ Y+     + +   + A G    K S + ++  YNNGP    Y+Y   +N  NL +  A T          A  AYTFA+G    + +G LW+  S+    N A L  T     K+TAW +   Y  G H F F Y +A D   +         G  T AK Y L Y Y LSKRT
Sbjct:   83 SNIRFAGTEGLGGGLTAWWQVESAIGTSDNNGTAGAQGNANITSIGTRNTAVGIKG-AWGNVYVGKWDMHYSTLAGVDGN--GLVGGLAMGASSLNLL------------HNQGVAFTAAAAG------LNSGAG--GRLNNALMYDSPTWNGFNVRLGYSFSAANESLANVTAAPGDSARKESNYWINPQYNNGPWHAFYSYMARNNIGNLTSTVAGTVGDPDARFHRAGLAYTFAMG----LKLGLLWDRNSINDGINGAGLDTT----FKRTAWAIPVQYMMGPHTFNFTYARAGDSSNTP--------GMDTSAKMYMLGYTYSLSKRT 376          
BLAST of mRNA_P-wetherbeei_contig19959.1.1 vs. uniprot
Match: UPI0009517E76 (porin n=1 Tax=Massilia putida TaxID=1141883 RepID=UPI0009517E76)

HSP 1 Score: 115 bits (287), Expect = 3.160e-25
Identity = 122/392 (31.12%), Postives = 170/392 (43.37%), Query Frame = 1
Query:    4 AGAASAQSSSVTIYGTLQGDFQVAESKSADTSTVVSVNSARTAASFTATPANQSARTRSNPAGSNLGFRGTEDLGNGLSAWFQLEMSTTLGAPSGTPDGANHGNAPTWRNTAVGLRSNTWGTVSVGMWDTPFNLMAVSTGNVNGRIANATTGQQANLLGTTLFGQGAWSAQNESAACTGPAIGVASASCLNAGMNFDRRQKQLLQWWSPNWNGFEARVAYAAVGFADGVTADS-RAAGSIKPSIWDLSLAYNNGPLAVGYAYSNQKNLLAYA-AATAAATAYTFALGGGNSIG---VGALWESLKWTANYATLVATDLTEMKK----------TAWRLQANYATGNHFFAFDYTKANDVKGSLAGAGVGFNGSGTEAKSYQLAYNYMLSKRT 1134
            AGA  AQ+S VTIYG L  D +  ++  A T+ V + +S                          +GFRG EDLG GL A FQ+E S +L   +GT  G         RN+ VGLRSN +GT+ +G WDTP+  M +          +  T +     G  L+G  + +A N              A+  N+   FDRRQ+ ++++WSPN  GF  ++AY       GV  +    A +  P +W L+  Y  GPL +  AY        YA  ATA      F +GG    G   V A+ E L+++ N   L AT L +  K          T W L   +  G         ++ D+K    GA        T+A+   L Y Y LSKRT
Sbjct:   15 AGACHAQTSKVTIYGKLNVDLESVKAGGASTTRVTNNSSL-------------------------IGFRGEEDLGGGLRALFQIENSVSLDTGAGTIAG---------RNSGVGLRSN-YGTLIMGQWDTPYKAMTIR--------LDPFTNKTIAAYGDVLYGDASKTAAN--------------AANRNS---FDRRQRNVIEYWSPNVAGFSGQLAY-------GVNEEKGTCAVACNPKLWSLAGGYEKGPLFLSAAYEQHDQ---YANTATARTRDRAFKVGGAYIFGSTTVSAMAERLRYSGN---LAATGLPKTFKAGAAQEATLDTLW-LGMTHRIGAGTLRLALGESRDLKLDRGGA------PDTDARYVALGYGYALSKRT 326          
BLAST of mRNA_P-wetherbeei_contig19959.1.1 vs. uniprot
Match: UPI00166851E9 (porin n=1 Tax=Undibacterium terreum TaxID=1224302 RepID=UPI00166851E9)

HSP 1 Score: 113 bits (282), Expect = 1.130e-24
Identity = 107/318 (33.65%), Postives = 146/318 (45.91%), Query Frame = 1
Query:  199 LGFRGTEDLGNGLSAWFQLEMSTTLGAPSGTPDGANHGNAPTWRNTAVGLRSNTWGTVSVGMWDTPFNLMAVSTGNVNGRIANATTGQQANLLGTTLFGQGAWSAQNESAACTGPAIGVASASCLNAGMNFDRRQKQLLQWWSPNWNGFEARVAYAAVGFADGVTADSRAAGSIKPSIWDLSLAYNNGPLAVGYAYSNQKNLLAYAAATAAATAYTFALGGGNSIGVGAL---WESLKWTANYATLVATDLTEMKKTAWRLQANYATGNHFFAFDYTKANDVKGSLAGAGVGFNGS-GTE--AKSYQLAYNYMLSKRT 1134
            LGFRG EDLG+G+ A+FQLE +  +   +G             RNT VGLR   +G V  G+W++P+  ++V        I   T G  A+    +L G G  +A N          GVA AS       FDRRQK LLQ+++P + G+ AR+A         V+A      +  P +    L Y  GPL + Y Y    +  A     A  T     LG   SIG   L   WE L++         T  T + + AW+L A +  G H F   Y +A +  G+ A AG+G  G  G E  A+ Y L Y Y LS+RT
Sbjct:   46 LGFRGKEDLGDGMEAFFQLESNVFVDTGAG---------GEFTRNTGVGLRGK-YGQVLAGIWESPYRFVSVYA------IDPFTAGIFAS---NSLLGNGFTTAAN----------GVAPAS-------FDRRQKNLLQYFAPGYLGWNARIA---------VSAREEKTAASNPGLVSGLLTYEQGPLYLAYGYERHTDYFA-----AGTTDEGHKLGAAYSIGGTRLRFAWEKLRYEP-------TVKTHLGRNAWQLGATHEIGLHIFRASYVRALNASGN-ASAGIGGTGKPGGESGARQYALGYGYNLSRRT 305          
BLAST of mRNA_P-wetherbeei_contig19959.1.1 vs. uniprot
Match: A0A1M7R7D4_9BURK (Outer membrane protein (Porin) n=3 Tax=Duganella TaxID=75654 RepID=A0A1M7R7D4_9BURK)

HSP 1 Score: 113 bits (282), Expect = 1.280e-24
Identity = 102/317 (32.18%), Postives = 147/317 (46.37%), Query Frame = 1
Query:  199 LGFRGTEDLGNGLSAWFQLEMSTTLGAPSGTPDGANHGNAPTWRNTAVGLRSNTWGTVSVGMWDTPFNLMAVSTGNVNGRIANATTGQQANLLGTTLFGQGAWSAQNESAACTGPAIGVASASCLNAGMNFDRRQKQLLQWWSPNWNGFEARVAYAAVGFADGVTADSRAAGSIKPSIWDLSLAYNNGPLAVGYAYSNQKNLLAYAAATAAATAYTFALGGGNSIG---VGALWESLKWTANYATLVATDLTEMKKTAWRLQANYATGNHFFAFDYTKANDVKGS--LAGAGVGFNGSGTEAKSYQLAYNYMLSKRT 1134
            LGFRGTEDLG G+ A FQ+EM   +    G             RNTAVGLR + +G V +G+W++P+  ++V        I   T G  A+     + G G  +A N           +A AS       FDRRQK LLQ+++P + G+ AR+A         ++A   A G   P +    + Y NGPL + Y     K+       TA  T     +G   SIG   + A WE L+    Y T V T L   ++ A +L A + +G H      TKA + +G+  ++  G+   G  + A  Y + Y Y LSKR+
Sbjct:   54 LGFRGTEDLGGGMQALFQIEMPVAVDTGGG---------GDFTRNTAVGLRGS-FGQVMLGIWESPYRFVSVYA------IDPFTAGIFAS---NGIMGNGFTTAANA----------IAPAS-------FDRRQKNLLQYFTPEYQGWNARIA---------ISAREEAGGGGNPGMASGLVTYENGPLYLAYGVEQHKDYF-----TAGTTDIGHKIGAAYSIGNTRLRAAWEYLR----YETTVTTHL---RRNAMQLAATHTSGRHILRASATKAFNARGNATISVGGIVRPGEDSGAMQYTVGYGYTLSKRS 313          
BLAST of mRNA_P-wetherbeei_contig19959.1.1 vs. uniprot
Match: A0A537AC41_9PROT (Porin (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AC41_9PROT)

HSP 1 Score: 112 bits (279), Expect = 2.310e-24
Identity = 103/320 (32.19%), Postives = 145/320 (45.31%), Query Frame = 1
Query:  211 GTEDLGNGLSAWFQLEMSTTLGAPSGTPDGANHGNAPTW--RNTAVGLRSNTWGTVSVGMWDTPFNLMAVSTGNVNGRIANATTGQQANLLGTTLFGQGAWSAQNESAACTGPAIGVASASCLNAGMNFDRRQKQLLQWWSPNWNGFEARVAYAAVGFADGVTADSRA-AGSIKPSIWDLSLAYNNGPLAVGYAYSNQKN------LLAYAAATAAATAYTFALGGG---NSIGVGALWESLKWTANYATLVATDLTEMKKTAWRLQANYATGNHFFAFDYTKANDVKGSLAGAGVGFNGSGTEAKSYQLAYNYMLSKRT 1134
            GTEDLG GL A+FQLE +      +GT  G        W  RN+ VGL+   WG V +G WD+P+     ST  ++       TG       T + G             TG        S      +FDRR + ++Q+W+PNW G   RVAY       G TA   + A +++P+++  S+AY  GPL    AY   K+      LL  AA++    A+   +  G   N+  +G + E LK+ A+   +      E K T W L   Y  G H  A  Y +  + K  L+GAG   N + ++AK     Y Y LSKRT
Sbjct:    1 GTEDLGQGLRAFFQLESAVNF--DNGTSSGF-------WASRNSGVGLQGG-WGQVLLGEWDSPYKF---STSRID------PTGNTGIAAYTGILGS------------TGSITAGQGGSTFAERASFDRRVQNVVQYWTPNWRGLTGRVAYGTGDTNVGSTATGVSEASNLRPALYAGSVAYEAGPLYATAAYERHKDFQPLNTLLGAAASSGKDDAWKGGIQYGFLNNTASIGGILEHLKYQAD--DINGLGALERKVTNWYLVGKYQAGPHAMALSYGQKGEEK--LSGAGFS-NIADSKAKQISARYGYSLSKRT 284          
BLAST of mRNA_P-wetherbeei_contig19959.1.1 vs. uniprot
Match: A0A809RKL0_9PROT (Porin n=1 Tax=Candidatus Desulfobacillus denitrificans TaxID=2608985 RepID=A0A809RKL0_9PROT)

HSP 1 Score: 113 bits (282), Expect = 2.350e-24
Identity = 110/335 (32.84%), Postives = 146/335 (43.58%), Query Frame = 1
Query:  193 SNLGFRGTEDLGNGLSAWFQLEM----STTLGAPSGTPDGANHGNAPTWRNTAVGLRSNTWGTVSVGMWDTPFNLMAVSTG-NVNGRIANATTGQQANLLGTTLFGQGAWSAQNESAACTGPAIGVASASC-LNAGMNFDRRQKQLLQWWSPNWNGFEARVAYAAVGFADGVTADSRAAGSI-KPSIWDLSLAYNNGPLAVGYAYSNQKNL------LAYAAATAA--------ATAYTFALGGGNSIGVGALWESLKWTANYATLVATDLTEMKKTAWRLQANYATGNHFFAFDYTKANDVKGSLAGAGVGFNGSGTEAKSYQLAYNYMLSKRT 1134
            SN+ F GTE LGNGL+AW+++E     S  +G       GA +      RNTAVG++   WG + VG WD     M   TG  V+G  A       AN L   L  QG              A+ ++ A   LN  + +D          +P WNGF  R+ Y+     + +T      GS  K S W L+  YNNGP    Y+Y  + N+      +  A  TAA          AYTFA+G    + VGA+W+      +   +  T    MK+TAW +   Y  G H F F Y +A D   +         G  T AK Y L Y Y LSKRT
Sbjct:   60 SNIKFAGTEALGNGLTAWWEVESAIGTSDNVGTSGMQTSGAANNATIGTRNTAVGIKG-AWGNIYVGKWD-----MHYHTGFGVDGAGALGGLAMGANSL-NMLMNQGT-------------AVPLSGAGGRLNNAIMYD----------TPTWNGFNVRLGYSTSAANEILTNLPGVGGSARKESNWWLNPQYNNGPWTAFYSYFARNNIGNTLSPVPPAVHTAAPDARFHRAGIAYTFAMG----LKVGAIWDRNSVDTDVTAMTPT----MKRTAWAIPVQYNMGPHTFNFTYARAGDSSNTP--------GMDTSAKMYMLGYTYALSKRT 348          
BLAST of mRNA_P-wetherbeei_contig19959.1.1 vs. uniprot
Match: A0A1G0CVD8_9PROT (Porin_4 domain-containing protein n=1 Tax=Gallionellales bacterium GWA2_60_18 TaxID=1798247 RepID=A0A1G0CVD8_9PROT)

HSP 1 Score: 111 bits (277), Expect = 4.260e-24
Identity = 111/379 (29.29%), Postives = 159/379 (41.95%), Query Frame = 1
Query:   19 AQSSSVTIYGTLQGDFQVAESKSADTSTVVSVNSARTAASFTATPANQSARTRSNPAGSNLGFRGTEDLGNGLSAWFQLE--MSTTLGAPSGTPDGANHGNAPTWRNTAVGLRSNTWGTVSVGMWDTPFNLMAVSTGNVNGRIANATTGQQANLLGTTLFGQGAWSAQNESAACTGPAIGVASASCLNAGMNFDRRQKQLLQWWSPNWNGFEARVAYAAVGFADGVTADSRAAGSIKPSIWDLSLAYNNGPLAVGYAYSNQKNLLAYAA-----ATAAATAYTFALGGGNSIGVGALWESLKWTANYATLVATDLTEMKKTAWRLQANYATGNHFFAFDYTKANDVKGSLAGAGVGFNGSGTEAKSYQLAYNYMLSKRT 1134
            A + +VTIYGTL  D++ A +   D +T    NS R + S                  SNLGF+G EDLG+GL A++QLE  +  T    +G  +GA        RN+A+GL S+ +GT  +G+W+TPF L      N      N T+    N++G                                +G  F  R+  ++Q+WSP ++GF+A+++Y+             A  + K + W  S  Y N  L   YAY ++KN  +  A     A     AY F  G      VG  +E L          A   +   + AW L   Y  GN  F   YT+A D+ G+              AK + L Y Y LSKRT
Sbjct:    4 ADNENVTIYGTLNMDYESAHN---DNNTAF--NSQRLSTSS-----------------SNLGFKGKEDLGDGLKAFYQLESQLDMTGAGNAGLFNGA--------RNSAIGLESS-FGTFFMGIWETPFRLSH----NKVELFGNTTSFSSTNIIGQESL----------------------------SGAKFVTRKSSIVQYWSPKFDGFQAKLSYSP-----------EATTTTKKTEWSFSAEYENDMLYATYAYDSKKNQKSTVADLTNTANRVVGAYKFKDGQ-----VGLTYERLS-----VAQAAGSTSTASRNAWELSGKYKAGNSNFGGFYTRAGDLSGTAESG----------AKQFALRYGYNLSKRT 288          
BLAST of mRNA_P-wetherbeei_contig19959.1.1 vs. uniprot
Match: A0A1F3WYS3_9PROT (Porin_4 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RBG_16_58_11 TaxID=1797476 RepID=A0A1F3WYS3_9PROT)

HSP 1 Score: 111 bits (278), Expect = 8.340e-24
Identity = 111/336 (33.04%), Postives = 156/336 (46.43%), Query Frame = 1
Query:  199 LGFRGTEDLGNGLSAWFQLEMSTTLGAPSGTP---DGANHGNAPTWRNTAVGLRSNTWGTVSVGMWDTPFNLMAVSTGNVNGRIANATTGQQANLLGTTLFGQGAWSAQNESAACTGPAIGVASASCLNAGMNFDRRQKQLLQWWSPNWNGFEARVAYAAVGFADGVTADSRAAGSI--KPSIWDLSLAYNNGPLAVGYAYSNQK----------NLLAYAAATAAATAYTFALGGGNSIG---VGALWESLKWTANYATLVATD-----LTEMK-KTAWRLQANYATGNHFFAFDYTKANDVKGSLAGAGVGFNGSGTEAKSYQLAYNYMLSKRT 1134
            LGF+GTEDLGNGLSA +Q+ +   +     T     G N G+    RNT  GL S T GTV +G  DTP+     STG ++  +   T+     L+G+  F                    VAS++       FD R   L+ + SP +NGF+ + A++A    +  TA+S   GS+  K +IW LS  Y NGP+   +A+  QK           L+ Y+A   A       LG G + G   VG +WE +K  AN A+  ATD     LT  + + AW L A ++ G       YT   D+ G L+ +G         AK + L  +Y  SKRT
Sbjct:   50 LGFKGTEDLGNGLSAIWQVAVDVRVDGTDSTATAVSGQNFGS----RNTYAGLASKTVGTVILGKHDTPYKT---STGPLD--LFTGTSADYNTLMGSNGFT-------------------VASSTTSTTAPTFDARPGNLVMYTSPKFNGFDVKAAWSATNETN-TTANS---GSVTNKGNIWSLSANYANGPIFATFAHEEQKAARNNLASSTTLVGYSATNQAVKGKATKLGFGYNFGATKVGVIWERVKDNANAASN-ATDYSGFGLTNSRDRKAWYLGAAHSIGKTTMKLAYTHMGDMDG-LSESG---------AKQWALGADYAFSKRT 342          
BLAST of mRNA_P-wetherbeei_contig19959.1.1 vs. uniprot
Match: UPI001BBA6206 (Porin n=1 Tax=Sulfuritalea sp. TaxID=2480090 RepID=UPI001BBA6206)

HSP 1 Score: 108 bits (270), Expect = 8.990e-23
Identity = 105/321 (32.71%), Postives = 140/321 (43.61%), Query Frame = 1
Query:  193 SNLGFRGTEDLGNGLSAWFQLEMSTTLGAPSGTPDGANH-GNAPT--WRNTAVGLRSNTWGTVSVGMWDTPF-NLMAVSTGNVNGRIANATTGQQANLLGTTLFGQGAWSAQNESAACTGPAIGVASASCLNAGMNFDRRQKQLLQWWSPNWNGFEARVAYA-AVGFADGVTA--DSRAAGSIKPSIWDLSLAYNNGPLAVGYAYSNQKNLLAYAAATAAATAYTFALGGGNSIGVGALWESLKWTANYATLVATDLTEMKKTAWRLQANYATGNHFFAFDYTKANDVKGSLAGAGVGFNGSGTEAKSYQLAYNYMLSKRT 1134
            SN+ F GTE LG GL+AW+Q+E +       GT    N  GN  +   RNTAVG+R   WG V +G WD  + N   V +  + G +A       AN L       GA SA                            R    + + SPNWNGF+ R+ Y+   G A    A  +S A  S K S W ++  Y NGP+ V Y++  + N+    +  A+  A    LGG  + G+G L   L W  N  +  A      K++AW L   Y  G H F   Y +ANDV           N + T A  + L Y Y LSKRT
Sbjct:   60 SNIRFAGTEALGGGLTAWWQVESAIGTTDNIGTTGAQNAVGNVTSIGTRNTAVGIRG-AWGNVYMGKWDMHYSNHAGVDSAGLAGGLAVG-----ANTLNILHTQNGANSAGG--------------------------RYNNAVMYDSPNWNGFDVRLGYSFTAGSAATAQANNESTAVNSRKESNWMINPRYTNGPIHVFYSHLARNNIGNVVSPAASPDARFDRLGGAYTFGMG-LKVGLIWDRNRLSPGA-GAASTKRSAWALPVTYVMGPHTFNGTYARANDVS----------NTNNTGANMWMLGYTYSLSKRT 336          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19959.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B3STB7_9BURK1.010e-2633.33Porin n=1 Tax=Noviherbaspirillum galbum TaxID=2709... [more]
A0A7V8C0X8_9RHOO1.530e-2633.63Porin n=2 Tax=Rhodocyclaceae bacterium TaxID=18981... [more]
UPI0009517E763.160e-2531.12porin n=1 Tax=Massilia putida TaxID=1141883 RepID=... [more]
UPI00166851E91.130e-2433.65porin n=1 Tax=Undibacterium terreum TaxID=1224302 ... [more]
A0A1M7R7D4_9BURK1.280e-2432.18Outer membrane protein (Porin) n=3 Tax=Duganella T... [more]
A0A537AC41_9PROT2.310e-2432.19Porin (Fragment) n=1 Tax=Betaproteobacteria bacter... [more]
A0A809RKL0_9PROT2.350e-2432.84Porin n=1 Tax=Candidatus Desulfobacillus denitrifi... [more]
A0A1G0CVD8_9PROT4.260e-2429.29Porin_4 domain-containing protein n=1 Tax=Gallione... [more]
A0A1F3WYS3_9PROT8.340e-2433.04Porin_4 domain-containing protein n=1 Tax=Betaprot... [more]
UPI001BBA62068.990e-2332.71Porin n=1 Tax=Sulfuritalea sp. TaxID=2480090 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19959contigP-wetherbeei_contig19959:1..1239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1231391.AMZF01000022_gene1242
PFAMsPOTRA_2,ShlB
Model size1134
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.38e-23
EggNOG OGsCOG2831@1|root,COG3203@1|root,COG2831@2|Bacteria,COG3203@2|Bacteria,1MWEC@1224|Proteobacteria,2VJXF@28216|Betaproteobacteria,3T55Y@506|Alcaligenaceae
DescriptionHaemolysin secretion/activation protein ShlB/FhaC/HecB
Cds size1134
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186186.2420523-CDS-P-wetherbeei_contig19959:0..2941683186186.2420523-CDS-P-wetherbeei_contig19959:0..294Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19959 1..294 -
1683186186.2501333-CDS-P-wetherbeei_contig19959:399..12391683186186.2501333-CDS-P-wetherbeei_contig19959:399..1239Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19959 400..1239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19959.1.1prot_P-wetherbeei_contig19959.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19959 1..1239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19959.1.1

>prot_P-wetherbeei_contig19959.1.1 ID=prot_P-wetherbeei_contig19959.1.1|Name=mRNA_P-wetherbeei_contig19959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=378bp
FAGAASAQSSSVTIYGTLQGDFQVAESKSADTSTVVSVNSARTAASFTAT
PANQSARTRSNPAGSNLGFRGTEDLGNGLSAWFQLEMSTTLGAPSGTPDG
ANHGNAPTWRNTAVGLRSNTWGTVSVGMWDTPFNLMAVSTGNVNGRIANA
TTGQQANLLGTTLFGQGAWSAQNESAACTGPAIGVASASCLNAGMNFDRR
QKQLLQWWSPNWNGFEARVAYAAVGFADGVTADSRAAGSIKPSIWDLSLA
YNNGPLAVGYAYSNQKNLLAYAAATAAATAYTFALGGGNSIGVGALWESL
KWTANYATLVATDLTEMKKTAWRLQANYATGNHFFAFDYTKANDVKGSLA
GAGVGFNGSGTEAKSYQLAYNYMLSKRT
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mRNA from alignment at P-wetherbeei_contig19959:1..1239-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19959.1.1 ID=mRNA_P-wetherbeei_contig19959.1.1|Name=mRNA_P-wetherbeei_contig19959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1239bp|location=Sequence derived from alignment at P-wetherbeei_contig19959:1..1239- (Phaeothamnion wetherbeei SAG_119_79)
TTCGCGGGCGCGGCTTCGGCTCAATCCTCCAGCGTCACCATCTACGGTAC GTTGCAGGGCGACTTCCAAGTTGCAGAATCGAAAAGCGCTGACACCTCGA CCGTCGTGTCCGTGAACTCGGCACGTACGGCCGCCAGCTTCACCGCAACC CCGGCCAACCAGTCGGCCCGCACCCGTTCCAACCCCGCTGGCTCGAACCT CGGCTTCCGCGGCACTGAAGACCTGGGCAACGGCCTGTCGGCCTGGTTCC AGCTCGAAATGTCGACCACCCTCGGCGCGCCTTCGGGCACCCCGGACGGT GCCAACCACGGCAACGCGCCCACCTGGCGTAACACCGCTGTCGGTCTGCG TTCGAACACCTGGGGTACTGTCTCCGTCGGCATGTGGGACACCCCGTTCA ACCTGATGGCTGTGTCCACCGGCAACGTCAATGGCCGCATCGCCAACGCC ACCACCGGCCAGCAAGCCAACCTGCTTGGCACCACGCTGTTCGGCCAGGG CGCATGGTCGGCGCAAAACGAGAGCGCGGCTTGTACCGGCCCCGCCATCG GTGTTGCTTCCGCCTCCTGCTTGAACGCCGGCATGAACTTTGACCGTCGC CAGAAGCAGTTGCTGCAGTGGTGGTCGCCGAACTGGAACGGCTTTGAAGC CCGCGTGGCCTACGCTGCCGTTGGTTTCGCTGACGGCGTGACCGCCGACA GCCGTGCCGCCGGTTCGATCAAGCCTTCGATTTGGGATCTGTCGCTGGCC TACAACAATGGCCCGCTGGCCGTTGGTTACGCCTACAGCAACCAGAAGAA CCTGCTGGCCTACGCTGCTGCTACGGCTGCTGCCACCGCTGTTGCAATCG GCAACGGTAACGGCACCGCCACCTGGACCGTTTCGGGTGCTGCTGCTACC GGCATCTCTGGTTCGACCGGTACCGGCCATCGCCTCGGCGGCAAGTACAC GTTCGCCCTCGGCGGCGGCAACAGCATCGGTGTTGGCGCCCTGTGGGAAT CGCTCAAGTGGACCGCCAACTACGCGACCCTGGTTGCCACCGACCTGACC GAAATGAAGAAGACCGCATGGCGTCTGCAGGCCAACTACGCCACCGGCAA CCACTTCTTCGCCTTTGATTACACCAAGGCAAATGACGTCAAGGGTTCGC TGGCTGGCGCTGGCGTCGGCTTCAACGGTTCGGGCACTGAAGCCAAGTCG TATCAGCTCGCCTACAACTACATGCTGTCGAAGCGCACT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19959:1..1239-

>mRNA_P-wetherbeei_contig19959.1.1 ID=mRNA_P-wetherbeei_contig19959.1.1|Name=mRNA_P-wetherbeei_contig19959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1134bp|location=Sequence derived from alignment at P-wetherbeei_contig19959:1..1239- (Phaeothamnion wetherbeei SAG_119_79)
TTCGCGGGCGCGGCTTCGGCTCAATCCTCCAGCGTCACCATCTACGGTAC
GTTGCAGGGCGACTTCCAAGTTGCAGAATCGAAAAGCGCTGACACCTCGA
CCGTCGTGTCCGTGAACTCGGCACGTACGGCCGCCAGCTTCACCGCAACC
CCGGCCAACCAGTCGGCCCGCACCCGTTCCAACCCCGCTGGCTCGAACCT
CGGCTTCCGCGGCACTGAAGACCTGGGCAACGGCCTGTCGGCCTGGTTCC
AGCTCGAAATGTCGACCACCCTCGGCGCGCCTTCGGGCACCCCGGACGGT
GCCAACCACGGCAACGCGCCCACCTGGCGTAACACCGCTGTCGGTCTGCG
TTCGAACACCTGGGGTACTGTCTCCGTCGGCATGTGGGACACCCCGTTCA
ACCTGATGGCTGTGTCCACCGGCAACGTCAATGGCCGCATCGCCAACGCC
ACCACCGGCCAGCAAGCCAACCTGCTTGGCACCACGCTGTTCGGCCAGGG
CGCATGGTCGGCGCAAAACGAGAGCGCGGCTTGTACCGGCCCCGCCATCG
GTGTTGCTTCCGCCTCCTGCTTGAACGCCGGCATGAACTTTGACCGTCGC
CAGAAGCAGTTGCTGCAGTGGTGGTCGCCGAACTGGAACGGCTTTGAAGC
CCGCGTGGCCTACGCTGCCGTTGGTTTCGCTGACGGCGTGACCGCCGACA
GCCGTGCCGCCGGTTCGATCAAGCCTTCGATTTGGGATCTGTCGCTGGCC
TACAACAATGGCCCGCTGGCCGTTGGTTACGCCTACAGCAACCAGAAGAA
CCTGCTGGCCTACGCTGCTGCTACGGCTGCTGCCACCGCTTACACGTTCG
CCCTCGGCGGCGGCAACAGCATCGGTGTTGGCGCCCTGTGGGAATCGCTC
AAGTGGACCGCCAACTACGCGACCCTGGTTGCCACCGACCTGACCGAAAT
GAAGAAGACCGCATGGCGTCTGCAGGCCAACTACGCCACCGGCAACCACT
TCTTCGCCTTTGATTACACCAAGGCAAATGACGTCAAGGGTTCGCTGGCT
GGCGCTGGCGTCGGCTTCAACGGTTCGGGCACTGAAGCCAAGTCGTATCA
GCTCGCCTACAACTACATGCTGTCGAAGCGCACT
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