mRNA_P-wetherbeei_contig19957.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19957.1.1
Unique NamemRNA_P-wetherbeei_contig19957.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19957.1.1 vs. uniprot
Match: A0A2G8JF48_STIJA (Putative transposon Ty3-I Gag-Pol polyprotein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JF48_STIJA)

HSP 1 Score: 119 bits (299), Expect = 3.860e-29
Identity = 60/122 (49.18%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    4 VGGSDTFSVFDLLHGYFNVIMKPEDIPKTAMITPFGLFEYLRCPQGVCGAPSHFSRLMDRVLEGLSCARP--YIDDALVHTKGVDKHIDALDAVLKRVKAHGLKLSPSKVHIGRKEVRFLGH 363
            +GG+  FS  DL HGYF V MK EDIPKTA   P+GL+E+ R PQG+C +PS F RLM+ +   L+ ++   Y+DD LV++   D+H+D L  V KR+  HGLKL   K H+ + EV  LGH
Sbjct:   88 LGGAKFFSSLDLAHGYFQVAMKEEDIPKTAFRVPWGLYEFNRMPQGLCNSPSTFQRLMELIFGDLNMSQLVLYLDDILVYSTTFDQHLDRLGNVFKRLIHHGLKLKGEKCHLFQAEVHHLGH 209          
BLAST of mRNA_P-wetherbeei_contig19957.1.1 vs. uniprot
Match: K7EWR6_PELSI (Ribonuclease H n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7EWR6_PELSI)

HSP 1 Score: 117 bits (292), Expect = 2.850e-28
Identity = 60/122 (49.18%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    4 VGGSDTFSVFDLLHGYFNVIMKPEDIPKTAMITPFGLFEYLRCPQGVCGAPSHFSRLMDRVLEG--LSCARPYIDDALVHTKGVDKHIDALDAVLKRVKAHGLKLSPSKVHIGRKEVRFLGH 363
            +G +  FS  DL  GYF V M+ +D  KTA+ TPFGLFE+ R P G+C AP+ F RLM+ VL    L     Y+DD +V +K  + HI+ LD V  R+K HGLKL PSK  + R+ V+FLGH
Sbjct:  121 LGSARVFSTLDLTSGYFQVAMEEQDQEKTAVTTPFGLFEWTRMPFGLCNAPATFQRLMEGVLGDYILDTLLIYLDDVIVFSKDFESHIEKLDVVFTRLKEHGLKLKPSKCCLLRERVKFLGH 242          
BLAST of mRNA_P-wetherbeei_contig19957.1.1 vs. uniprot
Match: A0A3P8QK96_ASTCA (Ribonuclease H n=4 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A3P8QK96_ASTCA)

HSP 1 Score: 115 bits (289), Expect = 1.300e-27
Identity = 59/121 (48.76%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 DVGGSDTFSVFDLLHGYFNVIMKPEDIPKTAMITPFGLFEYLRCPQGVCGAPSHFSRLMDRVLEGLSCARPYIDDALVHTKGVDKHIDALDAVLKRVKAHGLKLSPSKVHIGRKEVRFLGH 363
            ++ G+  FS  DL+ GY  V ++PED+PKTA+ITPFGLFE+LR P G+ GA   F RLMD VL GL     Y+DD LV +    +H   L  V +R++AHGL ++PSK   G   + FLGH
Sbjct:   57 NLAGTSIFSKIDLVRGYHQVPVRPEDVPKTAVITPFGLFEFLRMPFGLKGAAQTFQRLMDSVLRGLPFVFVYLDDILVASCSASQHESHLRQVFQRLEAHGLIINPSKCQSGLPVLDFLGH 177          
BLAST of mRNA_P-wetherbeei_contig19957.1.1 vs. uniprot
Match: A0A0P4VWC7_SCYOL (RNA-directed DNA polymerase n=1 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4VWC7_SCYOL)

HSP 1 Score: 115 bits (289), Expect = 1.330e-27
Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    4 VGGSDTFSVFDLLHGYFNVIMKPEDIPKTAMITPFGLFEYLRCPQGVCGAPSHFSRLMDRVLEG--LSCARPYIDDALVHTKGVDKHIDALDAVLKRVKAHGLKLSPSKVHIGRKEVRFLG 360
            + G+  FS FDL  GY  ++++ ED PKTA +TPFG ++Y+RCP G+  +P+ F R M+ V           Y+DD LV  + VD+H+D L+ +LK ++ HGLKL PSK HI + +VR+LG
Sbjct:  374 LAGAQYFSSFDLAAGYHQILVRAEDRPKTAFVTPFGHYQYVRCPMGLSNSPATFQRFMEYVFSDQVFVTLLVYLDDLLVFARSVDEHLDRLEGMLKLLRKHGLKLKPSKCHILKPQVRYLG 494          
BLAST of mRNA_P-wetherbeei_contig19957.1.1 vs. uniprot
Match: UPI001EECEA55 (uncharacterized protein LOC124393547 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI001EECEA55)

HSP 1 Score: 115 bits (287), Expect = 1.790e-27
Identity = 59/122 (48.36%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    4 VGGSDTFSVFDLLHGYFNVIMKPEDIPKTAMITPFGLFEYLRCPQGVCGAPSHFSRLMDRVLEGLS--CARPYIDDALVHTKGVDKHIDALDAVLKRVKAHGLKLSPSKVHIGRKEVRFLGH 363
            +G +  FS  DL  GYF V M  +D  KTA+ TPFGLFE+ R P G+C AP+ F RLM+ VL  L+      Y+DDA+V +K  + H + L+ V  R++ HGLKL PSK  + R EV+FLGH
Sbjct:  452 LGNAKLFSTLDLTAGYFQVAMSDKDREKTAVTTPFGLFEWSRMPFGLCNAPATFQRLMEVVLGALTFDVLLVYLDDAIVFSKDFESHCERLELVFNRLRQHGLKLKPSKCFLLRAEVKFLGH 573          
BLAST of mRNA_P-wetherbeei_contig19957.1.1 vs. uniprot
Match: Q4SV63_TETNG (Ribonuclease H n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4SV63_TETNG)

HSP 1 Score: 115 bits (287), Expect = 2.480e-27
Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    4 VGGSDTFSVFDLLHGYFNVIMKPEDIPKTAMITPFGLFEYLRCPQGVCGAPSHFSRLMDRVLEGLSCARPYIDDALVHTKGVDKHIDALDAVLKRVKAHGLKLSPSKVHIGRKEVRFLGH 363
            + G+  FS  DL+ GY  V ++ ED+PKTA+ITPFGLFE+LR P G+ GA   F RLMD VL GL+    Y+DD LV +   D+H+  L  V +R+  HGL ++P+K   G + + FLGH
Sbjct:  477 LAGATIFSKVDLVRGYHQVPVRAEDVPKTAVITPFGLFEFLRMPFGLKGAAQTFQRLMDSVLRGLTFVFVYLDDILVASPSADEHLTHLGQVFQRLADHGLIVNPAKCQFGLQVIDFLGH 596          
BLAST of mRNA_P-wetherbeei_contig19957.1.1 vs. uniprot
Match: H3CMX8_TETNG (Ribonuclease H n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CMX8_TETNG)

HSP 1 Score: 115 bits (287), Expect = 2.490e-27
Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    4 VGGSDTFSVFDLLHGYFNVIMKPEDIPKTAMITPFGLFEYLRCPQGVCGAPSHFSRLMDRVLEGLSCARPYIDDALVHTKGVDKHIDALDAVLKRVKAHGLKLSPSKVHIGRKEVRFLGH 363
            + G+  FS  DL+ GY  V ++ ED+PKTA+ITPFGLFE+LR P G+ GA   F RLMD VL GL+    Y+DD LV +   D+H+  L  V +R+  HGL ++P+K   G + + FLGH
Sbjct:  530 LAGATIFSKVDLVRGYHQVPVRAEDVPKTAVITPFGLFEFLRMPFGLKGAAQTFQRLMDSVLRGLTFVFVYLDDILVASPSADEHLTHLGQVFQRLADHGLIVNPAKCQFGLQVIDFLGH 649          
BLAST of mRNA_P-wetherbeei_contig19957.1.1 vs. uniprot
Match: A0A433TB03_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433TB03_ELYCH)

HSP 1 Score: 113 bits (283), Expect = 3.310e-27
Identity = 56/120 (46.67%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    4 VGGSDTFSVFDLLHGYFNVIMKPEDIPKTAMITPFGLFEYLRCPQGVCGAPSHFSRLMDRVLEGLSCARPYIDDALVHTKGVDKHIDALDAVLKRVKAHGLKLSPSKVHIGRKEVRFLGH 363
            + G + FS  DL+ GY  + + PED+PKTA+ITPFGL+E+LR P G+  A   F RLMD VL+ L CA  Y+DD LV +     H D L+AV +R++ HGL +   K   G   + FLGH
Sbjct:  321 LAGKNIFSKIDLVRGYHQIPVAPEDVPKTAVITPFGLWEFLRMPFGLKCAAQSFQRLMDTVLQDLDCAFVYLDDILVASSSAQSHFDDLNAVFQRLRHHGLVIKLEKCLFGVSSLDFLGH 440          
BLAST of mRNA_P-wetherbeei_contig19957.1.1 vs. uniprot
Match: UPI002013E03B (uncharacterized protein LOC125277609 n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI002013E03B)

HSP 1 Score: 114 bits (286), Expect = 3.380e-27
Identity = 60/122 (49.18%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    4 VGGSDTFSVFDLLHGYFNVIMKPEDIPKTAMITPFGLFEYLRCPQGVCGAPSHFSRLMDRVLEGLS--CARPYIDDALVHTKGVDKHIDALDAVLKRVKAHGLKLSPSKVHIGRKEVRFLGH 363
            +G +  FS  DL  GYF V M  ED  KTA+ TPFGLFE+ R P G+C AP+ F RLM  VL  L+      Y+DD +V +K  D H   L+ V  R++ HGLKL PSK  I + EV+FLGH
Sbjct: 1022 LGNAQLFSTLDLTSGYFQVAMSEEDRAKTAITTPFGLFEWTRMPFGLCNAPATFQRLMGVVLGDLTFDILLIYLDDIIVFSKDFDSHCQRLETVFNRLRQHGLKLKPSKCFILKPEVKFLGH 1143          
BLAST of mRNA_P-wetherbeei_contig19957.1.1 vs. uniprot
Match: UPI000CE1F156 (uncharacterized protein LOC111946903 n=1 Tax=Oryzias latipes TaxID=8090 RepID=UPI000CE1F156)

HSP 1 Score: 114 bits (285), Expect = 4.550e-27
Identity = 60/122 (49.18%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    4 VGGSDTFSVFDLLHGYFNVIMKPEDIPKTAMITPFGLFEYLRCPQGVCGAPSHFSRLMDRVLEGLS--CARPYIDDALVHTKGVDKHIDALDAVLKRVKAHGLKLSPSKVHIGRKEVRFLGH 363
            +G +  FS  DL  GYF V M  ED  KTA+ TPFGLFE+ R P G+C AP+ F RLM  VL  LS      Y+DD LV+++  + H + L  V +R++ HGLKL PSK  + R EV+FLGH
Sbjct:  799 LGDAHLFSTLDLTAGYFQVAMNEEDQGKTAVTTPFGLFEWTRMPFGLCNAPATFQRLMGLVLGDLSFDILLVYLDDILVYSRDFESHCERLGLVFQRLRQHGLKLKPSKCFLLRPEVKFLGH 920          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19957.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G8JF48_STIJA3.860e-2949.18Putative transposon Ty3-I Gag-Pol polyprotein n=1 ... [more]
K7EWR6_PELSI2.850e-2849.18Ribonuclease H n=1 Tax=Pelodiscus sinensis TaxID=1... [more]
A0A3P8QK96_ASTCA1.300e-2748.76Ribonuclease H n=4 Tax=Pseudocrenilabrinae TaxID=3... [more]
A0A0P4VWC7_SCYOL1.330e-2744.63RNA-directed DNA polymerase n=1 Tax=Scylla olivace... [more]
UPI001EECEA551.790e-2748.36uncharacterized protein LOC124393547 n=1 Tax=Silur... [more]
Q4SV63_TETNG2.480e-2747.50Ribonuclease H n=1 Tax=Tetraodon nigroviridis TaxI... [more]
H3CMX8_TETNG2.490e-2747.50Ribonuclease H n=1 Tax=Tetraodon nigroviridis TaxI... [more]
A0A433TB03_ELYCH3.310e-2746.67Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
UPI002013E03B3.380e-2749.18uncharacterized protein LOC125277609 n=1 Tax=Megal... [more]
UPI000CE1F1564.550e-2749.18uncharacterized protein LOC111946903 n=1 Tax=Oryzi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19957contigP-wetherbeei_contig19957:892..1254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog13735.ENSPSIP00000000226
PFAMsRVT_1,SCAN,rve,zf-CCHC,zf-H2C2
Model size364
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.67e-29
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,48NVP@7711|Chordata,49IM1@7742|Vertebrata,4CIIU@8459|Testudines
DescriptionK02A2.6-like
Cds size363
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186186.1961856-CDS-P-wetherbeei_contig19957:891..12541683186186.1961856-CDS-P-wetherbeei_contig19957:891..1254Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19957 892..1254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19957.1.1prot_P-wetherbeei_contig19957.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19957 892..1254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19957.1.1

>prot_P-wetherbeei_contig19957.1.1 ID=prot_P-wetherbeei_contig19957.1.1|Name=mRNA_P-wetherbeei_contig19957.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
DVGGSDTFSVFDLLHGYFNVIMKPEDIPKTAMITPFGLFEYLRCPQGVCG
APSHFSRLMDRVLEGLSCARPYIDDALVHTKGVDKHIDALDAVLKRVKAH
GLKLSPSKVHIGRKEVRFLGH
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mRNA from alignment at P-wetherbeei_contig19957:892..1254+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19957.1.1 ID=mRNA_P-wetherbeei_contig19957.1.1|Name=mRNA_P-wetherbeei_contig19957.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig19957:892..1254+ (Phaeothamnion wetherbeei SAG_119_79)
GACGTGGGGGGCAGCGACACGTTCAGCGTTTTCGACCTGCTGCACGGATA TTTCAACGTCATCATGAAGCCGGAAGACATCCCCAAGACAGCCATGATCA CACCGTTCGGCCTTTTCGAGTACCTACGTTGCCCGCAAGGCGTGTGCGGT GCACCTTCGCATTTCTCACGCCTGATGGACAGAGTGCTGGAGGGGCTATC GTGCGCGCGTCCATACATTGACGACGCGCTGGTCCATACCAAAGGCGTGG ACAAACACATCGACGCGCTCGACGCTGTCCTGAAGCGGGTGAAGGCGCAC GGGCTCAAGCTGTCACCGAGCAAGGTGCACATCGGGCGCAAGGAGGTGCG CTTCCTGGGTCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19957:892..1254+

>mRNA_P-wetherbeei_contig19957.1.1 ID=mRNA_P-wetherbeei_contig19957.1.1|Name=mRNA_P-wetherbeei_contig19957.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig19957:892..1254+ (Phaeothamnion wetherbeei SAG_119_79)
GACGTGGGGGGCAGCGACACGTTCAGCGTTTTCGACCTGCTGCACGGATA
TTTCAACGTCATCATGAAGCCGGAAGACATCCCCAAGACAGCCATGATCA
CACCGTTCGGCCTTTTCGAGTACCTACGTTGCCCGCAAGGCGTGTGCGGT
GCACCTTCGCATTTCTCACGCCTGATGGACAGAGTGCTGGAGGGGCTATC
GTGCGCGCGTCCATACATTGACGACGCGCTGGTCCATACCAAAGGCGTGG
ACAAACACATCGACGCGCTCGACGCTGTCCTGAAGCGGGTGAAGGCGCAC
GGGCTCAAGCTGTCACCGAGCAAGGTGCACATCGGGCGCAAGGAGGTGCG
CTTCCTGGGTCAT
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