mRNA_P-wetherbeei_contig19919.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19919.1.1
Unique NamemRNA_P-wetherbeei_contig19919.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19919.1.1 vs. uniprot
Match: A0A7V8CS01_9BURK (Nucleoside deaminase n=1 Tax=Janthinobacterium sp. FT58W TaxID=2654254 RepID=A0A7V8CS01_9BURK)

HSP 1 Score: 76.3 bits (186), Expect = 1.320e-14
Identity = 43/72 (59.72%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 AAVEQAVEAAREAAATGTFGVGGVLVGPQGEVLAVSRNHVICQGAVADPTAHGERQLVDWYFQQIYQGDRLP 216
            AAV  A   A  A   GTFGVGGVL+   G VL    N+V+  G VADPTAHGERQLVDWYF Q  QG  LP
Sbjct:    9 AAVAIAAAQALAARTQGTFGVGGVLLDGAGNVLQAMHNNVVKDGLVADPTAHGERQLVDWYFAQQAQGRALP 80          
BLAST of mRNA_P-wetherbeei_contig19919.1.1 vs. uniprot
Match: A0A1M5RB83_9BURK (Cytosine deaminase n=2 Tax=Massilia sp. CF038 TaxID=1881045 RepID=A0A1M5RB83_9BURK)

HSP 1 Score: 74.3 bits (181), Expect = 6.260e-14
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   49 GTFGVGGVLVGPQGEVLAVSRNHVICQGAVADPTAHGERQLVDWYFQQIYQGDRLP 216
            GTFGVGGV++   G VL   +N+V+C+G V DPTAHGERQL+DWYF +  +G  LP
Sbjct:   15 GTFGVGGVMLDQHGYVLKALQNNVVCEGLVFDPTAHGERQLIDWYFAERARGAALP 70          
BLAST of mRNA_P-wetherbeei_contig19919.1.1 vs. uniprot
Match: A0A1A7C6W8_9BURK (Cytosine deaminase n=1 Tax=Janthinobacterium psychrotolerans TaxID=1747903 RepID=A0A1A7C6W8_9BURK)

HSP 1 Score: 73.9 bits (180), Expect = 8.790e-14
Identity = 42/72 (58.33%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 AAVEQAVEAAREAAATGTFGVGGVLVGPQGEVLAVSRNHVICQGAVADPTAHGERQLVDWYFQQIYQGDRLP 216
            AAV  A   A  A   GTFGVGGVL+   G VL    N V+  G VADPTAHGERQLVDWYF Q+  G  LP
Sbjct:    9 AAVAIAAAEALAAKTEGTFGVGGVLLDGAGNVLQSMHNKVVQGGLVADPTAHGERQLVDWYFAQVSAGAALP 80          
BLAST of mRNA_P-wetherbeei_contig19919.1.1 vs. uniprot
Match: A0A6L6PX49_9BURK (Nucleoside deaminase n=2 Tax=Massilia TaxID=149698 RepID=A0A6L6PX49_9BURK)

HSP 1 Score: 73.9 bits (180), Expect = 8.830e-14
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 AAVEQAVEAAREAAATGTFGVGGVLVGPQGEVLAVSRNHVICQGAVADPTAHGERQLVDWYFQQIYQGDRLP 216
            AAV  A   A  A   GTFGVGGV++   G +L    N+VI  G V DPTAHGERQL+DWYF++  QG  LP
Sbjct:    9 AAVAVAANEAIAAKTQGTFGVGGVMIDASGTILKALPNNVIRDGLVFDPTAHGERQLIDWYFEERAQGTELP 80          
BLAST of mRNA_P-wetherbeei_contig19919.1.1 vs. uniprot
Match: UPI001EDBEF49 (nucleoside deaminase n=1 Tax=Massilia sp. TS11 TaxID=2908003 RepID=UPI001EDBEF49)

HSP 1 Score: 73.6 bits (179), Expect = 1.210e-13
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 AAVEQAVEAAREAAATGTFGVGGVLVGPQGEVLAVSRNHVICQGAVADPTAHGERQLVDWYFQQIYQGDRLP 216
            AA  QA   A  A A G+FGVGG+++  QG VL  + NH +  G V DPTAHGERQLVDWYF +  +G  LP
Sbjct:    9 AAAAQAANEAITAKAAGSFGVGGLMLDAQGNVLKSTPNHTVRDGLVFDPTAHGERQLVDWYFAEKAKGRVLP 80          
BLAST of mRNA_P-wetherbeei_contig19919.1.1 vs. uniprot
Match: A0A7W8K954_9BURK (Cytosine deaminase n=3 Tax=Janthinobacterium TaxID=29580 RepID=A0A7W8K954_9BURK)

HSP 1 Score: 72.8 bits (177), Expect = 2.270e-13
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 AAVEQAVEAAREAAATGTFGVGGVLVGPQGEVLAVSRNHVICQGAVADPTAHGERQLVDWYFQQIYQGDRLP 216
            AAV  A   A  A   GTFGVGGVL+   G VL    N+V+ QG V DPTAHGERQLVDWYF +  +G  LP
Sbjct:    9 AAVAIAAAEAMAAKTQGTFGVGGVLLDGAGNVLQSMHNNVVRQGLVFDPTAHGERQLVDWYFAERAKGTPLP 80          
BLAST of mRNA_P-wetherbeei_contig19919.1.1 vs. uniprot
Match: W0VCJ8_9BURK (Cytidine and deoxycytidylate deaminase zinc-binding region family protein n=1 Tax=Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 TaxID=1349767 RepID=W0VCJ8_9BURK)

HSP 1 Score: 72.8 bits (177), Expect = 2.290e-13
Identity = 40/72 (55.56%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 AAVEQAVEAAREAAATGTFGVGGVLVGPQGEVLAVSRNHVICQGAVADPTAHGERQLVDWYFQQIYQGDRLP 216
            AAV  A   A  A   GTFGVGGVL+   G VL    N+V+  GA+ DPTAHGERQLVDWYF +  +G  LP
Sbjct:    9 AAVAIAAAEAMAAKTQGTFGVGGVLLDQSGNVLQSMHNNVVRNGAIFDPTAHGERQLVDWYFAERAKGRDLP 80          
BLAST of mRNA_P-wetherbeei_contig19919.1.1 vs. uniprot
Match: A0A840RFJ0_9NEIS (Cytosine deaminase n=1 Tax=Silvimonas terrae TaxID=300266 RepID=A0A840RFJ0_9NEIS)

HSP 1 Score: 72.8 bits (177), Expect = 2.330e-13
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    4 AVEQAVEAAREAAATGTFGVGGVLVGPQGEVLAVSRNHVICQGAVADPTAHGERQLVDWYFQQIYQGDRLP 216
            AV +A + A +A   GTF VGG L+ P G  L    N+V+  G   DPTAHGERQL+DWY+ Q+ QG  LP
Sbjct:   18 AVARAADMATQAYGQGTFSVGGTLLDPLGNELKAIHNNVVVNGLTHDPTAHGERQLIDWYYAQLAQGITLP 88          
BLAST of mRNA_P-wetherbeei_contig19919.1.1 vs. uniprot
Match: A0A1I9Y1Y2_9BURK (CMP/dCMP-type deaminase domain-containing protein n=69 Tax=Janthinobacterium TaxID=29580 RepID=A0A1I9Y1Y2_9BURK)

HSP 1 Score: 72.4 bits (176), Expect = 3.120e-13
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 AAVEQAVEAAREAAATGTFGVGGVLVGPQGEVLAVSRNHVICQGAVADPTAHGERQLVDWYFQQIYQGDRLP 216
            AAV  A   A  A   GTFGVGGVL+   G VL    N+V+ QG V DPTAHGERQLVDWYF +  +G  LP
Sbjct:    9 AAVAIAAAEALAAKTQGTFGVGGVLLDGAGNVLQSMHNNVVRQGLVFDPTAHGERQLVDWYFAERAKGTPLP 80          
BLAST of mRNA_P-wetherbeei_contig19919.1.1 vs. uniprot
Match: A0A848HMR6_9BURK (Nucleoside deaminase n=1 Tax=Massilia polaris TaxID=2728846 RepID=A0A848HMR6_9BURK)

HSP 1 Score: 72.4 bits (176), Expect = 3.140e-13
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 AAVEQAVEAAREAAATGTFGVGGVLVGPQGEVLAVSRNHVICQGAVADPTAHGERQLVDWYFQQIYQGDRLP 216
            AAV  A   A  A   GTFGVGG+L+  QG VL   +N+V+ +G V DPTAHGERQL+DWYF +  +G  LP
Sbjct:    9 AAVAIAANEAVAAKTQGTFGVGGLLLDQQGNVLKSLQNNVVREGLVFDPTAHGERQLIDWYFAERAKGAALP 80          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19919.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V8CS01_9BURK1.320e-1459.72Nucleoside deaminase n=1 Tax=Janthinobacterium sp.... [more]
A0A1M5RB83_9BURK6.260e-1458.93Cytosine deaminase n=2 Tax=Massilia sp. CF038 TaxI... [more]
A0A1A7C6W8_9BURK8.790e-1458.33Cytosine deaminase n=1 Tax=Janthinobacterium psych... [more]
A0A6L6PX49_9BURK8.830e-1454.17Nucleoside deaminase n=2 Tax=Massilia TaxID=149698... [more]
UPI001EDBEF491.210e-1354.17nucleoside deaminase n=1 Tax=Massilia sp. TS11 Tax... [more]
A0A7W8K954_9BURK2.270e-1356.94Cytosine deaminase n=3 Tax=Janthinobacterium TaxID... [more]
W0VCJ8_9BURK2.290e-1355.56Cytidine and deoxycytidylate deaminase zinc-bindin... [more]
A0A840RFJ0_9NEIS2.330e-1350.70Cytosine deaminase n=1 Tax=Silvimonas terrae TaxID... [more]
A0A1I9Y1Y2_9BURK3.120e-1356.94CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A848HMR6_9BURK3.140e-1354.17Nucleoside deaminase n=1 Tax=Massilia polaris TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19919contigP-wetherbeei_contig19919:1..216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1349767.GJA_4409
Preferred nametadA
PFAMsMafB19-deam
Model size216
Max annot lvl2|Bacteria
KEGG rclassRC00074,RC00477,RC00514,RC00809
KEGG koko:K01485,ko:K11991
KEGG ReactionR00974,R01411,R02922,R10223
KEGG Pathwayko00240,ko00330,ko01100,map00240,map00330,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.76e-14
EggNOG OGsCOG0590@1|root,COG0590@2|Bacteria
EC3.5.4.1,3.5.4.33
DescriptiontRNA wobble adenosine to inosine editing
Cds size216
COG categoryFJ
BRITEko00000,ko00001,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186185.251239-CDS-P-wetherbeei_contig19919:0..2161683186185.251239-CDS-P-wetherbeei_contig19919:0..216Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19919 1..216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19919.1.1prot_P-wetherbeei_contig19919.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19919 1..216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19919.1.1

>prot_P-wetherbeei_contig19919.1.1 ID=prot_P-wetherbeei_contig19919.1.1|Name=mRNA_P-wetherbeei_contig19919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
AAVEQAVEAAREAAATGTFGVGGVLVGPQGEVLAVSRNHVICQGAVADPT
AHGERQLVDWYFQQIYQGDRLP
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mRNA from alignment at P-wetherbeei_contig19919:1..216-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19919.1.1 ID=mRNA_P-wetherbeei_contig19919.1.1|Name=mRNA_P-wetherbeei_contig19919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig19919:1..216- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCTGTCGAGCAAGCTGTGGAAGCGGCCCGGGAGGCCGCAGCCACAGG CACCTTCGGAGTCGGAGGCGTGCTTGTCGGGCCGCAGGGCGAAGTCCTCG CAGTAAGTCGGAATCACGTCATTTGCCAGGGAGCTGTGGCCGATCCGACC GCTCACGGAGAGCGCCAACTGGTGGACTGGTATTTCCAGCAGATCTACCA AGGAGACCGGTTACCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19919:1..216-

>mRNA_P-wetherbeei_contig19919.1.1 ID=mRNA_P-wetherbeei_contig19919.1.1|Name=mRNA_P-wetherbeei_contig19919.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig19919:1..216- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCTGTCGAGCAAGCTGTGGAAGCGGCCCGGGAGGCCGCAGCCACAGG
CACCTTCGGAGTCGGAGGCGTGCTTGTCGGGCCGCAGGGCGAAGTCCTCG
CAGTAAGTCGGAATCACGTCATTTGCCAGGGAGCTGTGGCCGATCCGACC
GCTCACGGAGAGCGCCAACTGGTGGACTGGTATTTCCAGCAGATCTACCA
AGGAGACCGGTTACCT
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