mRNA_P-wetherbeei_contig1981.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1981.6.1 vs. uniprot
Match: A0A835ZBL6_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL6_9STRA) HSP 1 Score: 110 bits (274), Expect = 7.080e-29 Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 1
Query: 46 MAKIGKGSPGNLGSGRQPVTTGGSGTGTAVITKDKIKEKSGEKVQRKEQLDKESWWRVILHNDEIHTFDYVTKSIIKV 279
MA IGK PGNLGSG+ V TG TGT+V+ KD++KEK ++VQRKEQLDKE WWRVILHND+IHTFDYVT SI KV
Sbjct: 24 MADIGKKGPGNLGSGKGEVQTGSPSTGTSVLVKDRVKEKVEDQVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKV 101
BLAST of mRNA_P-wetherbeei_contig1981.6.1 vs. uniprot
Match: D8LIY1_ECTSI (ClpS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIY1_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 2.070e-16 Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 1
Query: 103 TTGGSGTGTAVITKDKIKEKSGEKVQRKEQLDKESWWRVILHNDEIHTFDYVTKSIIKV 279
T GG+GTG I K+K+KE +V KE+LDKE WWRVILHNDEIHTFDYVT+SI KV
Sbjct: 79 TGGGTGTGVQTIVKEKVKEMV--EVDNKEELDKEQWWRVILHNDEIHTFDYVTQSITKV 135
BLAST of mRNA_P-wetherbeei_contig1981.6.1 vs. uniprot
Match: A0A835ZHY3_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHY3_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 2.200e-15 Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1
Query: 148 KIKEKSGEKVQRKEQLDKESWWRVILHNDEIHTFDYVTKSIIKV 279
++KEK +KVQRKEQLDKE WWRVILHND+IHTFDYVT SI KV
Sbjct: 11 RVKEKVEDKVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKV 54
BLAST of mRNA_P-wetherbeei_contig1981.6.1 vs. uniprot
Match: A0A7S1TKB3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKB3_9RHOD) HSP 1 Score: 70.1 bits (170), Expect = 7.960e-13 Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 46 MAKIGKGSPGNLGSGR-QPVTTGGSGTGTAVITKDKIKEKSGEKVQRKEQLDKESWWRVILHNDEIHTFDYVTKSIIKV 279
MA IG+ P N+G G+ Q TGG G G I K ++K+KS +R+EQ D+E WRV+LHND++HTFDYVT SI+KV
Sbjct: 65 MADIGRSKP-NIGGGKFQREDTGGKG-GVVTIQKPEVKKKS----KREEQTDREPNWRVLLHNDDVHTFDYVTGSIVKV 137
BLAST of mRNA_P-wetherbeei_contig1981.6.1 vs. uniprot
Match: A0A7S1T7M9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T7M9_9RHOD) HSP 1 Score: 67.8 bits (164), Expect = 3.170e-12 Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 34 GWTMMAKIGKGSPGNLGSGRQPVTTGGSGTGTAVITKDKIKEKSGEKVQRKEQLDKESWWRVILHNDEIHTFDYVTKSIIKV 279
G MA IG+ P ++G G+ P T GS G+ V+ + I +K K +R+EQ DKE WRV+LHND++HTFDYVT SI+KV
Sbjct: 24 GKVHMADIGRPRP-DVGGGKGP--TFGSEKGSGVLVAEPIVKKKP-KTRREEQTDKEPSWRVLLHNDDVHTFDYVTMSIVKV 101
BLAST of mRNA_P-wetherbeei_contig1981.6.1 vs. uniprot
Match: A0A7S2GQ17_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GQ17_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 3.600e-12 Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 73 GNLGSGRQPVTTGGSGTGTAVITKDKIKEKSGEKVQRKEQLDKESWWRVILHNDEIHTFDYVTKSIIKV 279
G+ G G + G G IT DK+ +VQ KE L++E WWRV+LHNDEIHTF+YVT++I+K+
Sbjct: 2 GDGGGGSEKQKQSRKGAGVQTITIDKV----DNEVQEKEDLNEEGWWRVLLHNDEIHTFEYVTEAIVKI 66
BLAST of mRNA_P-wetherbeei_contig1981.6.1 vs. uniprot
Match: R7Q4R1_CHOCR (ClpS domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4R1_CHOCR) HSP 1 Score: 67.4 bits (163), Expect = 6.350e-12 Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 7 SRPARTPAPGWT--MMAKIGKGSPGNLGSGRQPVTTGGS-GTGTAVITKDKIKEKSGEKVQRKEQLDKESWWRVILHNDEIHTFDYVTKSIIKV 279
SR PAP ++ MMA I K PG G R P G G G AVITK +K+K+ +RK + +KE WRV+LHND++HTF+YVT +I+KV
Sbjct: 85 SRKPGHPAPCFSVSMMADISKPRPGVGGPKRGPEFGGADKGGGVAVITKPDVKQKT----KRKAKTEKEPSWRVLLHNDDVHTFEYVTGAIVKV 174
BLAST of mRNA_P-wetherbeei_contig1981.6.1 vs. uniprot
Match: A0A7S2W133_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W133_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 6.590e-11 Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 118 GTGTAVITKDKIKEKSGEKVQRKEQLDKESWWRVILHNDEIHTFDYVTKSIIKV 279
G G IT D+ + KV+ K LDKE WWRV+LHNDEIHTF+YVT++++KV
Sbjct: 7 GRGVTTITIDRTD--TDTKVEEKMDLDKEGWWRVLLHNDEIHTFEYVTEALVKV 58
BLAST of mRNA_P-wetherbeei_contig1981.6.1 vs. uniprot
Match: L1J9P0_GUITC (ClpS domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1J9P0_GUITC) HSP 1 Score: 64.7 bits (156), Expect = 9.340e-11 Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 1
Query: 31 PGWTMMAKIGKG-SPGNLGSGRQPVTTG---GSGTGTAVITKDKIKEKSGEKVQRKEQLDKESWWRVILHNDEIHTFDYVTKSIIKV 279
PG +KI KG S GN+G P + G G G AV+TK +K+ + ++KEQ+DKE WRV+LHND++HTFDYV +I+KV
Sbjct: 54 PGDGGASKINKGGSGGNVGGKGGPDFSKDQEGGGAGVAVLTKPPDLDKAAD-YEKKEQVDKEPIWRVLLHNDDVHTFDYVIDTIVKV 139
BLAST of mRNA_P-wetherbeei_contig1981.6.1 vs. uniprot
Match: A0A5J4Z744_PORPP (ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z744_PORPP) HSP 1 Score: 64.7 bits (156), Expect = 1.060e-10 Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 43 MMAKIGKGSPGNLGSGRQPVTTGGSGTGTAVITKDKIKEKSGEKVQRKEQLDKESWWRVILHNDEIHTFDYVTKSIIKV 279
MMA IGKGSP N+G G+ T S I K ++K+KS +RK + +KE WRV+LHND++HTFDYVT I++V
Sbjct: 75 MMADIGKGSP-NIGGGKFEQDT--SRGNVITIQKPEVKKKS----ERKSETEKEKNWRVLLHNDDVHTFDYVTGIIVQV 146 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1981.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1981.6.1 >prot_P-wetherbeei_contig1981.6.1 ID=prot_P-wetherbeei_contig1981.6.1|Name=mRNA_P-wetherbeei_contig1981.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp VASRPARTPAPGWTMMAKIGKGSPGNLGSGRQPVTTGGSGTGTAVITKDKback to top mRNA from alignment at P-wetherbeei_contig1981:5884..6162+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1981.6.1 ID=mRNA_P-wetherbeei_contig1981.6.1|Name=mRNA_P-wetherbeei_contig1981.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig1981:5884..6162+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1981:5884..6162+ >mRNA_P-wetherbeei_contig1981.6.1 ID=mRNA_P-wetherbeei_contig1981.6.1|Name=mRNA_P-wetherbeei_contig1981.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig1981:5884..6162+ (Phaeothamnion wetherbeei SAG_119_79)back to top |