mRNA_P-wetherbeei_contig19801.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19801.1.1
Unique NamemRNA_P-wetherbeei_contig19801.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19801.1.1 vs. uniprot
Match: D7FJM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM6_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 6.620e-36
Identity = 65/121 (53.72%), Postives = 90/121 (74.38%), Query Frame = 1
Query:   16 RYIVTDVAQGTLDFVATHPALQRFVKMGVLDVALLDGESPET-GPLWLQISKRHVDLATVTSPVVAICNYVFDTLVQDAFRIKGGQLYENRVSMTSERLPPADVRQLHLKSMEGLSVSWNH 375
            RY+VTDVAQGTLD+V  HP++Q F+K GVL+VALLD E P     L LQ+S + VDL +  +PV  +CNYVFD+L+QDAFR+KG  LYENRV++T+ +  P ++ +L L +++GL + W H
Sbjct:  266 RYVVTDVAQGTLDYVRRHPSMQGFLKKGVLEVALLDAEDPSPPSTLLLQVSGQVVDLKSAKNPVATVCNYVFDSLLQDAFRLKGKTLYENRVTITATKPLPENLAELSLTALQGLGLQWEH 386          
BLAST of mRNA_P-wetherbeei_contig19801.1.1 vs. uniprot
Match: A0A2T4VAL4_VITXG (Uncharacterized protein n=1 Tax=Vitiosangium sp. (strain GDMCC 1.1324) TaxID=2138576 RepID=A0A2T4VAL4_VITXG)

HSP 1 Score: 77.4 bits (189), Expect = 4.360e-14
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   10 FCRYIVTDVAQGTLDFVATHPALQRFVKMGVLDVALLDGESPETGPLWLQISKRHVDLATVTSPVVAICNYVFDTLVQDAFRIKGGQLYE 279
            FC YI++D  +  L F  +H +LQ FV+ GVLD AL D E  + G + L+ + R ++ A +  P+VAI NYVFD++  DAF +K GQL+E
Sbjct:  139 FC-YILSDFTESNLQFWQSHRSLQPFVEQGVLDFALFDAE--KDGEVRLRRAGRTLEPARLARPLVAIANYVFDSIPHDAFAVKDGQLHE 225          
BLAST of mRNA_P-wetherbeei_contig19801.1.1 vs. uniprot
Match: A0A1V9ZZE4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZE4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.610e-13
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1
Query:   16 RYIVTDVAQGTLDFVATHPALQRFVKMGVLDVALLDGESPETGPLWLQISKRHVDLATVTSPVVAICNYVFDTLVQDAFRIKGGQLYENRVSMTSERLPPADV 324
            RYI+TD     L F  THPALQ FVK G+LD A+ D    ++  L+L  SK  +    + +P+  + NY+FDTL  + FR++ G L +  +S+ S R    D 
Sbjct:  143 RYIMTDFTDTNLKFWTTHPALQSFVKDGLLDFAIFDATRDDS--LYLINSKTTLSPGILKNPIAIVANYLFDTLHHELFRMENGLLKQGLISVGSSRSQEPDA 243          
BLAST of mRNA_P-wetherbeei_contig19801.1.1 vs. uniprot
Match: A0A7G5C0E2_9BACL (Uncharacterized protein n=1 Tax=Cohnella cholangitidis TaxID=2598458 RepID=A0A7G5C0E2_9BACL)

HSP 1 Score: 74.7 bits (182), Expect = 3.540e-13
Identity = 38/96 (39.58%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   16 RYIVTDVAQGTLDFVATHPALQRFVKMGVLDVALLDGESPETGPLWLQISKRHVDLATVTSPVVAICNYVFDTLVQDAFRIKGGQLYENRVSMTSE 303
            RY++TD A+  L+F   HP+ +RF + G+ D+AL D +  ++  + L+ S   +   +++SPVVAI NYVFD+L QD + I  GQ+    VS+ +E
Sbjct:   19 RYVLTDFARSNLEFWRQHPSFERFRERGIWDIALFDAQ--QSDEIALEYSGVSLRPGSLSSPVVAIANYVFDSLPQDLYYIDQGQISHCLVSLYAE 112          
BLAST of mRNA_P-wetherbeei_contig19801.1.1 vs. uniprot
Match: B9Q5A1_TOXGV (TPR domain-containing protein n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=B9Q5A1_TOXGV)

HSP 1 Score: 74.7 bits (182), Expect = 4.090e-13
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   19 YIVTDVAQGTLDFVATHPALQRFVKMGVLDVALLDGESPETGPLWLQISKRHVDLATVTSPVVAICNYVFDTLVQDAFRIKGGQLYENRVSMTSERLPPADVRQLHLKSMEGLSVSWN 372
            Y+ +DVA+  + F + HPA Q F++ G LD A+ DG   E   + L  SKR V + T   P+VA+ NYVFD+L+ D +R+  G+  E   +  S   P  +        M  +S+ W+
Sbjct:  184 YVFSDVAEANVAFCSKHPAFQEFIQQGWLDFAVFDGNDKEAR-IHLTCSKRTVPIGT---PIVAVANYVFDSLLTDGWRVTPGKEVEFHRAAVSVYSPQVEPDPTAADIMLRMSLGWD 297          
BLAST of mRNA_P-wetherbeei_contig19801.1.1 vs. uniprot
Match: A0A7W1YV74_9BACT (Uncharacterized protein n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1YV74_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 5.090e-13
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   19 YIVTDVAQGTLDFVATHPALQRFVKMGVLDVALLDGESPETGPLWLQISKRHVDLATVTSPVVAICNYVFDTLVQDAFRIKGGQLYENRVSMTSE---RLPPADVRQLHLK 342
            Y++TD+A   ++F   +P L+ + + G+LD A       +T P+ L   K  +   T+ +P+V ICNY FDT+ Q+ FR + GQL E  +S+ ++    + PA + QL  +
Sbjct:  111 YVMTDIASSNIEFWQQNPQLKPYFEQGLLDCAYF--HHAQTDPIHLINRKETLSQETLVNPMVLICNYFFDTIPQELFRFRNGQLEEGEISLYTKVEGAIDPAIINQLQCR 219          
BLAST of mRNA_P-wetherbeei_contig19801.1.1 vs. uniprot
Match: A0A2A9MH19_9APIC (Tetratricopeptide repeat-containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MH19_9APIC)

HSP 1 Score: 73.6 bits (179), Expect = 1.030e-12
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   19 YIVTDVAQGTLDFVATHPALQRFVKMGVLDVALLDGESPETGPLWLQISKRHVDLATVTSPVVAICNYVFDTLVQDAFRIKGGQLYENRVSMTSERLPPADVRQLHLKSMEGLSVSWN 372
            Y+ +DVA+   DF A HPA Q  V+ G LD A+ DG   +   L L  SK  V + T   P+VA+ NYVFD+L+ D +R+  G+  E   +  S   P  +      + M  +S+ W+
Sbjct:  160 YVFSDVAEANADFCAKHPAFQTLVREGWLDFAVFDGND-QNASLQLICSKEIVPVGT---PIVAVANYVFDSLLTDGWRVSPGKDVEFHRAAVSVYSPQVEPDPTAAEIMVRMSLGWS 273          
BLAST of mRNA_P-wetherbeei_contig19801.1.1 vs. uniprot
Match: A0A2R5GQD6_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQD6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.610e-12
Identity = 36/105 (34.29%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   19 YIVTDVAQGTLDFVATHPALQRFVKMGVLDVALLDGESPE-TGPLWLQISKRHVDLATVTSPVVAICNYVFDTLVQDAFRIKGGQLYENRVSMTSERLPPADVRQ 330
            Y++T+V + ++ F  +H ALQ     GVLD+A++D    +   P+ L++S   +      +PV+ +CNY+FD+L QDAF+++ G LY  +V +      P  VR+
Sbjct:  434 YVLTEVHEVSVRFWKSHSALQALFDEGVLDLAVVDAAHVDGCDPIVLEMSGLTITAGQTEAPVIGVCNYLFDSLEQDAFQVRRGVLYRAQVEIVGGLGKPLHVRR 538          
BLAST of mRNA_P-wetherbeei_contig19801.1.1 vs. uniprot
Match: F0VJQ5_NEOCL (Putative TPR domain-containing protein n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VJQ5_NEOCL)

HSP 1 Score: 72.4 bits (176), Expect = 2.630e-12
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   19 YIVTDVAQGTLDFVATHPALQRFVKMGVLDVALLDGESPETGPLWLQISKRHVDLATVTSPVVAICNYVFDTLVQDAFRIKGGQLYENRVSMTSERLPPADVRQLHLKSMEGLSVSWN 372
            Y+ +DVA+  + F + HPA Q F+  G LD A+ DG   E   + L  SK+ V L T   P+VA+ NYVFD+L+ D +R+  G+  E   +  S   P  +        M  +S+ W+
Sbjct:  175 YVFSDVAEANVTFCSKHPAFQSFIADGWLDFAVFDGNDKEAR-IHLTCSKQTVPLGT---PIVAVANYVFDSLLTDGWRVTPGENVEFHRAAVSVYSPQVEPDPTAADIMLRMSLGWD 288          
BLAST of mRNA_P-wetherbeei_contig19801.1.1 vs. uniprot
Match: UPI0011B23BDA (tetratricopeptide repeat protein n=1 Tax=Haliangium sp. UPWRP_2 TaxID=1931276 RepID=UPI0011B23BDA)

HSP 1 Score: 71.2 bits (173), Expect = 6.320e-12
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   16 RYIVTDVAQGTLDFVATHPALQRFVKMGVLDVALLDGESPETGPLWLQISKRHVDLATVTSPVVAICNYVFDTLVQDAFRIKGGQLYENRVSMT--SERLPPAD 321
            RY++TD+A+  L    + PAL  + + GVLD AL D E+ E   + L+ S   + +  V +P++   NY+ D+L+QDAFRI+ G L E  V++   SE  P +D
Sbjct:  156 RYVMTDIAESNLTAWVSSPALGPYFEEGVLDCALFDAENHEE--IVLRRSGVRLSVGQVKNPLIVFANYILDSLIQDAFRIREGVLEEALVTLRHPSENPPLSD 257          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19801.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJM6_ECTSI6.620e-3653.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2T4VAL4_VITXG4.360e-1445.56Uncharacterized protein n=1 Tax=Vitiosangium sp. (... [more]
A0A1V9ZZE4_9STRA1.610e-1338.83Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7G5C0E2_9BACL3.540e-1339.58Uncharacterized protein n=1 Tax=Cohnella cholangit... [more]
B9Q5A1_TOXGV4.090e-1334.75TPR domain-containing protein n=15 Tax=Toxoplasma ... [more]
A0A7W1YV74_9BACT5.090e-1333.33Uncharacterized protein n=1 Tax=Parachlamydiaceae ... [more]
A0A2A9MH19_9APIC1.030e-1235.59Tetratricopeptide repeat-containing protein n=1 Ta... [more]
A0A2R5GQD6_9STRA2.610e-1234.29Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
F0VJQ5_NEOCL2.630e-1234.75Putative TPR domain-containing protein n=1 Tax=Neo... [more]
UPI0011B23BDA6.320e-1238.46tetratricopeptide repeat protein n=1 Tax=Haliangiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19801contigP-wetherbeei_contig19801:278..1229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJM6
PFAMsGFO_IDH_MocA,TPR_2,TPR_8
Model size375
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.09e-36
EggNOG OGs28JR9@1|root,2QS4P@2759|Eukaryota
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186181.8434653-CDS-P-wetherbeei_contig19801:277..4361683186181.8434653-CDS-P-wetherbeei_contig19801:277..436Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19801 278..436 +
1683186181.854998-CDS-P-wetherbeei_contig19801:745..8561683186181.854998-CDS-P-wetherbeei_contig19801:745..856Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19801 746..856 +
1683186181.8649173-CDS-P-wetherbeei_contig19801:1124..12291683186181.8649173-CDS-P-wetherbeei_contig19801:1124..1229Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19801 1125..1229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19801.1.1prot_P-wetherbeei_contig19801.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19801 278..1229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19801.1.1

>prot_P-wetherbeei_contig19801.1.1 ID=prot_P-wetherbeei_contig19801.1.1|Name=mRNA_P-wetherbeei_contig19801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MDLFCRYIVTDVAQGTLDFVATHPALQRFVKMGVLDVALLDGESPETGPL
WLQISKRHVDLATVTSPVVAICNYVFDTLVQDAFRIKGGQLYENRVSMTS
ERLPPADVRQLHLKSMEGLSVSWNH
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mRNA from alignment at P-wetherbeei_contig19801:278..1229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19801.1.1 ID=mRNA_P-wetherbeei_contig19801.1.1|Name=mRNA_P-wetherbeei_contig19801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=952bp|location=Sequence derived from alignment at P-wetherbeei_contig19801:278..1229+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCTCTTCTGCAGGTATATCGTGACGGACGTGGCGCAGGGCACGCT CGACTTCGTTGCGACCCACCCGGCGCTTCAACGGTTTGTCAAGATGGGCG TTTTGGACGTCGCGCTGCTGGATGGCGAGAGCCCCGAGACGGGACCGTTA TGGCTCCAGGTGAGGTTATCTGTTGCCGCGGCGTCTTCTGCCCAACGGTG GGTGCCCCCGACCGCGCGGGCGGCGCCGGCGGCGCCGGCGGCGAGAAAAA ACATTAGCCGTGGCACCCTTCTTCATTGCATGGTGTCATCCTTTTCGCCC TCCTCCTATTCGGGCTCGGCCCCGTTTCCGGGTTAACTGTATTTCCCGGC TCTTGCGCTTTTTCTTCCTCGCCTTACCGTTCCTGTCTTGCCTGCATGCC TGTAATATCTGCCGCTTTTTACCTTTCTGCCATTTTCTGTCGTTTTCTGC GATTTTTGGCGTTTTCAGATCTCGAAGCGGCACGTGGATCTGGCAACGGT AACGAGCCCCGTGGTGGCGATATGCAACTACGTCTTCGACACGCTCGTCC AAGACGCCTTTCGGATCAAGGGCGGACAGGTACGGAGGGACGGGACCGGC CGGGCGGAAGGGGAACCAGCCTTTTTTCCTGTGCTTTGGTGCTCTAACCT TGTTAAAGAGTATGTCTTTCGCCGCTTTTTGAGGAGGCTTGTCATCTTTT TACTCCAGTCTTGGGCGCCAGTAGGGAAAGGTCACCCTTAACCAGCGGCG CGCTGTTCCCCTCTTGCGGTCGAATCTTTGTGGGCGGTGAATGGCCGGCG ACGGTTGGACAATACTGCTCTTTCTTTGGCTGTCACATAACTCGCAGTTG TACGAGAACCGGGTGAGCATGACATCGGAGCGGCTGCCGCCTGCGGACGT CCGACAACTCCACCTGAAGTCCATGGAGGGGCTCTCCGTCAGCTGGAACC AT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19801:278..1229+

>mRNA_P-wetherbeei_contig19801.1.1 ID=mRNA_P-wetherbeei_contig19801.1.1|Name=mRNA_P-wetherbeei_contig19801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig19801:278..1229+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCTCTTCTGCAGGTATATCGTGACGGACGTGGCGCAGGGCACGCT
CGACTTCGTTGCGACCCACCCGGCGCTTCAACGGTTTGTCAAGATGGGCG
TTTTGGACGTCGCGCTGCTGGATGGCGAGAGCCCCGAGACGGGACCGTTA
TGGCTCCAGATCTCGAAGCGGCACGTGGATCTGGCAACGGTAACGAGCCC
CGTGGTGGCGATATGCAACTACGTCTTCGACACGCTCGTCCAAGACGCCT
TTCGGATCAAGGGCGGACAGTTGTACGAGAACCGGGTGAGCATGACATCG
GAGCGGCTGCCGCCTGCGGACGTCCGACAACTCCACCTGAAGTCCATGGA
GGGGCTCTCCGTCAGCTGGAACCAT
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