mRNA_P-wetherbeei_contig19779.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19779.1.1
Unique NamemRNA_P-wetherbeei_contig19779.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19779.1.1 vs. uniprot
Match: A0A835YN13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN13_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 6.630e-7
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   10 TPLHLAARFGHPTVCRVLLRHGADPDAPDHRGQRP 114
            TPLH AA +GHP  CR+LL HGA+P+A D  G RP
Sbjct:   27 TPLHHAACYGHPDACRLLLNHGANPNAADSDGHRP 61
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BLAST of mRNA_P-wetherbeei_contig19779.1.1 vs. uniprot
Match: A0A7S4F572_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F572_CHRCT)

HSP 1 Score: 49.3 bits (116), Expect = 2.500e-6
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    4 GRTPLHLAARFGHPTVCRVLLRHGADPDAPDHRG 105
            G TPLH+AARFG   V  +LL HGA+P A DHRG
Sbjct:   83 GATPLHIAARFGQLGVVELLLEHGANPMARDHRG 116
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BLAST of mRNA_P-wetherbeei_contig19779.1.1 vs. uniprot
Match: A0A7S0MMR3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MMR3_9CRYP)

HSP 1 Score: 48.9 bits (115), Expect = 1.260e-5
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:   13 PLHLAARFGHPTVCRVLLRHGADPDAPDHRGQ 108
            PLH AARFG P +C+VLL++GADPD  D  G+
Sbjct:   95 PLHYAARFGRPGMCKVLLKNGADPDKRDAEGK 126
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BLAST of mRNA_P-wetherbeei_contig19779.1.1 vs. uniprot
Match: A0A814C685_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814C685_ADIRI)

HSP 1 Score: 48.9 bits (115), Expect = 1.510e-5
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    1 DGRTPLHLAARFGHPTVCRVLLRHGADPDAPDHRGQRP 114
            DG+TPLHLAA +GH      LL++GADP  P + GQ P
Sbjct:  590 DGKTPLHLAAEYGHALCVDALLKNGADPLFPSYLGQLP 627
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BLAST of mRNA_P-wetherbeei_contig19779.1.1 vs. uniprot
Match: UPI0018A766E1 (ankyrin repeat domain-containing protein 27-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A766E1)

HSP 1 Score: 47.0 bits (110), Expect = 2.310e-5
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:   10 TPLHLAARFGHPTVCRVLLRHGADPDAPDHRG 105
            TPLHLAAR GH T CR+L+ +GAD +A D RG
Sbjct:   16 TPLHLAARCGHVTSCRLLVGNGADKEAKDLRG 47
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BLAST of mRNA_P-wetherbeei_contig19779.1.1 vs. uniprot
Match: D3B6N2_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B6N2_POLPP)

HSP 1 Score: 45.8 bits (107), Expect = 3.390e-5
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:    4 GRTPLHLAARFGHPTVCRVLLRHGAD 81
            G TPLH+AA FGH T+C++LL +GAD
Sbjct:   37 GYTPLHMAAMFGHSTICQILLENGAD 62
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BLAST of mRNA_P-wetherbeei_contig19779.1.1 vs. uniprot
Match: UPI001ED86FE5 (uncharacterized protein LOC124164520 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86FE5)

HSP 1 Score: 47.4 bits (111), Expect = 5.300e-5
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:    4 GRTPLHLAARFGHPTVCRVLLRHGAD 81
            GRTPLHLAA+ G+ T CR+LL HGAD
Sbjct:  563 GRTPLHLAAKAGNTTTCRILLSHGAD 588
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BLAST of mRNA_P-wetherbeei_contig19779.1.1 vs. uniprot
Match: A0A8H5R1D0_9HYPO (Ankyrin repeat-containing protein n=1 Tax=Fusarium tjaetaba TaxID=1567544 RepID=A0A8H5R1D0_9HYPO)

HSP 1 Score: 47.4 bits (111), Expect = 5.300e-5
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 1 
Query:    1 DGRTPLHLAARFGHPTVCRVLLRHGADPDAP 93
             G + LHLAA FGH   CR+LL+HGADP+ P
Sbjct: 1061 QGDSLLHLAALFGHTDTCRILLKHGADPNLP 1091
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BLAST of mRNA_P-wetherbeei_contig19779.1.1 vs. uniprot
Match: A0A8J5U6I1_FUSOX (26S proteasome non-ATPase regulatory subunit 10 n=1 Tax=Fusarium oxysporum f. sp. rapae TaxID=485398 RepID=A0A8J5U6I1_FUSOX)

HSP 1 Score: 47.0 bits (110), Expect = 6.890e-5
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    4 GRTPLHLAARFGHPTVCRVLLRHGADPDAPDHRG 105
            G +PLH+A R GH  V R+L++HGADP+A D  G
Sbjct:  199 GASPLHVAVRAGHDGVARILMQHGADPNAADGSG 232
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BLAST of mRNA_P-wetherbeei_contig19779.1.1 vs. uniprot
Match: A0A6J2YVE3_SITOR (E3 ubiquitin-protein ligase n=3 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YVE3_SITOR)

HSP 1 Score: 47.0 bits (110), Expect = 7.240e-5
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:   16 LHLAARFGHPTVCRVLLRHGADPDAPDHRGQRP 114
            LH AA FG PT+ +VLLRHGA+PD  D  G+ P
Sbjct:  455 LHYAACFGRPTIAKVLLRHGANPDLRDEDGKTP 487
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19779.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A835YN13_9STRA6.630e-762.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4F572_CHRCT2.500e-664.71Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S0MMR3_9CRYP1.260e-562.50Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A814C685_ADIRI1.510e-555.26Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
UPI0018A766E12.310e-565.63ankyrin repeat domain-containing protein 27-like n... [more]
D3B6N2_POLPP3.390e-565.38Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
UPI001ED86FE55.300e-573.08uncharacterized protein LOC124164520 n=1 Tax=Ischn... [more]
A0A8H5R1D0_9HYPO5.300e-561.29Ankyrin repeat-containing protein n=1 Tax=Fusarium... [more]
A0A8J5U6I1_FUSOX6.890e-555.8826S proteasome non-ATPase regulatory subunit 10 n=... [more]
A0A6J2YVE3_SITOR7.240e-560.61E3 ubiquitin-protein ligase n=3 Tax=Sitophilus ory... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19779contigP-wetherbeei_contig19779:924..1037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog9767.XP_007193953.1
Preferred nameNOTCH4
PFAMsAnk,Ank_2,Ank_5,EGF,EGF_CA,NOD,NODP,Notch,hEGF
Model size114
Max annot lvl33208|Metazoa
KEGG koko:K20996
KEGG Pathwayko01522,ko04320,ko04330,ko04919,ko05165,ko05200,ko05206,ko05224,map01522,map04320,map04330,map04919,map05165,map05200,map05206,map05224
KEGG ModuleM00682
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0000902,GO:0000904,GO:0001525,GO:0001568,GO:0001569,GO:0001709,GO:0001763,GO:0001885,GO:0001886,GO:0001944,GO:0002009,GO:0002064,GO:0002376,GO:0002520,GO:0003158,GO:0003382,GO:0003674,GO:0005102,GO:0005112,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0008150,GO:0008152,GO:0008593,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009986,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022603,GO:0023051,GO:0023052,GO:0023057,GO:0030097,GO:0030154,GO:0030162,GO:0030855,GO:0030856,GO:0030857,GO:0030879,GO:0031090,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032774,GO:0032879,GO:0032880,GO:0032989,GO:0034641,GO:0034645,GO:0034654,GO:0035239,GO:0035295,GO:0038023,GO:0042175,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045165,GO:0045446,GO:0045595,GO:0045596,GO:0045601,GO:0045602,GO:0045746,GO:0045765,GO:0045766,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0046982,GO:0046983,GO:0048468,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048646,GO:0048729,GO:0048731,GO:0048732,GO:0048754,GO:0048845,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051252,GO:0051254,GO:0051716,GO:0060089,GO:0060255,GO:0060429,GO:0060562,GO:0060841,GO:0061138,GO:0065007,GO:0070013,GO:0070613,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080090,GO:0090304,GO:0097659,GO:0097708,GO:0098588,GO:0098791,GO:0098827,GO:1901342,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903317,GO:1903506,GO:1903508,GO:1903847,GO:1903849,GO:1904018,GO:1905651,GO:1905653,GO:2000026,GO:2000112,GO:2001141
Exons1
Evalue2.02e-07
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota,39Y8J@33154|Opisthokonta,3BNYU@33208|Metazoa,3D5ZW@33213|Bilateria,489IG@7711|Chordata,497TI@7742|Vertebrata,3J6BU@40674|Mammalia,4J4X6@91561|Cetartiodactyla
DescriptionNeurogenic locus notch homolog protein
Cds size114
COG categoryT
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186181.1711912-CDS-P-wetherbeei_contig19779:923..10371683186181.1711912-CDS-P-wetherbeei_contig19779:923..1037Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19779 924..1037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19779.1.1prot_P-wetherbeei_contig19779.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19779 924..1037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19779.1.1

>prot_P-wetherbeei_contig19779.1.1 ID=prot_P-wetherbeei_contig19779.1.1|Name=mRNA_P-wetherbeei_contig19779.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=38bp
DGRTPLHLAARFGHPTVCRVLLRHGADPDAPDHRGQRP
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mRNA from alignment at P-wetherbeei_contig19779:924..1037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19779.1.1 ID=mRNA_P-wetherbeei_contig19779.1.1|Name=mRNA_P-wetherbeei_contig19779.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=114bp|location=Sequence derived from alignment at P-wetherbeei_contig19779:924..1037+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGCCGCACGCCGCTGCATCTGGCGGCCCGCTTCGGCCACCCGACCGT
CTGCCGCGTGCTGCTGCGTCACGGCGCTGACCCGGACGCACCAGACCACC
GGGGCCAGCGGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19779:924..1037+

>mRNA_P-wetherbeei_contig19779.1.1 ID=mRNA_P-wetherbeei_contig19779.1.1|Name=mRNA_P-wetherbeei_contig19779.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=114bp|location=Sequence derived from alignment at P-wetherbeei_contig19779:924..1037+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGCCGCACGCCGCTGCATCTGGCGGCCCGCTTCGGCCACCCGACCGT
CTGCCGCGTGCTGCTGCGTCACGGCGCTGACCCGGACGCACCAGACCACC
GGGGCCAGCGGCCG
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