mRNA_P-wetherbeei_contig1977.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1977.3.1
Unique NamemRNA_P-wetherbeei_contig1977.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1977.3.1 vs. uniprot
Match: A0A6H5KQJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ2_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 4.730e-35
Identity = 63/117 (53.85%), Postives = 85/117 (72.65%), Query Frame = 2 
Query:   71 VSWFNRGFPRLAKLGYAPKFQALAAHWPPRSTNVQKWRSAQVLQLLEILGLQSLEGCLREQEFLPEGDTEESPFGSLDAPEVDEIFSGSGADAGEVEALKVSLRYLKGEFFDVSVMA 421
            ++W   G P L K GYA KF+ L+  +PP S++V KW  +++++++ ILGL  LE  LREQEFLPE   EESPFGSLDA E++E+F  SG    E++A+KV+LRYLKGEF +VSV A
Sbjct:    3 IAWLYAGHPALVKNGYAEKFEELSRQYPPSSSDVSKWTGSELMKMIGILGLSGLEPALREQEFLPENPEEESPFGSLDASELEEVFEDSGVPRIEIDAIKVALRYLKGEFTNVSVKA 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1977.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQJ2_9PHAE4.730e-3553.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1977contigP-wetherbeei_contig1977:2466..3923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size879
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionmonocarboxylate permease, putative
Ec32 orthologEc-03_003510.1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186180.9131393-UTR-P-wetherbeei_contig1977:2465..29201683186180.9131393-UTR-P-wetherbeei_contig1977:2465..2920Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1977 2466..2920 -
1683186180.9473302-UTR-P-wetherbeei_contig1977:3862..39231683186180.9473302-UTR-P-wetherbeei_contig1977:3862..3923Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1977 3863..3923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186180.9214108-CDS-P-wetherbeei_contig1977:2920..30671683186180.9214108-CDS-P-wetherbeei_contig1977:2920..3067Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1977 2921..3067 -
1683186180.9295223-CDS-P-wetherbeei_contig1977:3492..35911683186180.9295223-CDS-P-wetherbeei_contig1977:3492..3591Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1977 3493..3591 -
1683186180.9380567-CDS-P-wetherbeei_contig1977:3745..38621683186180.9380567-CDS-P-wetherbeei_contig1977:3745..3862Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1977 3746..3862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1977.3.1prot_P-wetherbeei_contig1977.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1977 2921..3862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1977.3.1

>prot_P-wetherbeei_contig1977.3.1 ID=prot_P-wetherbeei_contig1977.3.1|Name=mRNA_P-wetherbeei_contig1977.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MGDVSWFNRGFPRLAKLGYAPKFQALAAHWPPRSTNVQKWRSAQVLQLLE
ILGLQSLEGCLREQEFLPEGDTEESPFGSLDAPEVDEIFSGSGADAGEVE
ALKVSLRYLKGEFFDVSVMA*
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mRNA from alignment at P-wetherbeei_contig1977:2466..3923-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1977.3.1 ID=mRNA_P-wetherbeei_contig1977.3.1|Name=mRNA_P-wetherbeei_contig1977.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1458bp|location=Sequence derived from alignment at P-wetherbeei_contig1977:2466..3923- (Phaeothamnion wetherbeei SAG_119_79)
TCCTTACCACTCATACCGCCTTTTCTTTTCCCCTCAGCCTTTCACCCTCC
AAAGTTGACCAATGGGGGACGTCTCGTGGTTCAACCGCGGCTTCCCTCGG
CTCGCCAAGCTCGGATATGCACCAAAGTTCCAGGCACTCGCAGCACATTG
GCCTCCGCGCTCCACAAACGTGCAGAAAGTACGTCTTCGTCCTCGTTGTT
CAGTTAAATGAAAAGCTCTAAAAATAAACACTTCGCGATTCATTCGTCCG
GCTTGGCAGGCGTTAGACAGCTTTGGCTCGCAATCGTCCAAATAATCCAC
CACCGGATCTATTTTTCTTCTTGTTGTGGCAGTGGAGGAGTGCACAAGTG
TTGCAGCTTTTGGAGATTTTGGGGCTCCAGTCCCTCGAGGGCTGCCTCCG
CGAGCAAGAATTTCTGCCGGAGGGCGACACGGTGAGAGCAGGACATTCGG
CGCCCTCACAGATGACGTGGCAAACTGCGGGTTTTCCGCTCAGCCTTCTT
TCCTTTTGTTGCTCACATGCGGCCAATCGTCTGCGGATCTTTCCTAACTT
CTCTTCTCCTTTTTCTCGGCCTCGTGGCTTCGACGGCCGGAATCCTGTTG
TGCGAATCGCTACACAGTGGGTTTTCTTCTGCCTTCTCTTGCATTCTTCA
AATCTTTCTCCAAAACCTTCAAGGCTTACTTGTATCCCTCGGCCCACCCG
CAAGAGCGCACCCATTCTAAGCGAAAATTCACTCCTTCTCACCCTCTTGG
CCTCTGATGCCCAAACCCATATCTACGCACTTTCCAAACGTTCTGTGTGA
TGACAACTGCATGCCGCGCTGGCTGGCGCCGGGTTTTCGGGCGGCGGCGG
CGGCAGGAGGAGTCGCCGTTCGGCAGCCTCGACGCGCCGGAGGTGGATGA
GATTTTCAGCGGCAGCGGCGCCGACGCCGGCGAAGTCGAGGCGCTCAAAG
TCTCCCTCCGCTACCTGAAGGGCGAATTTTTCGACGTTTCCGTCATGGCA
TAGCGGCGCTTCGTCTCTCGCCTGGCTGCCGACGCCCCTGCCGCCAGATT
ACGGGGGCGAGCGATGGAATTGTGCGCAACGGCGGCTGACGATGCGCCAG
TGCCGGCTAGTATGTCTGGCAAGGGCGGACGGGGACAGATTTTCCTAATT
TATTGGCTGGGTACCGAGGCCGGGCGATGGCTGGAAGGGCTGAGAAGGAG
GGGTGTCCATGCGCGCCCAGAGAGAAATGCAGCGAAAAGAGGGAAGAAAA
GAAGATGCGGAAGCTTCGTACTGTTACATGTCCTCCCCCGCTTTTGTCGC
CCACCCACCCACAACGACGAGGCAGGCGCAGCGCACGGATGTAGGGTCTT
AACTTCGGCTCTATTCTCACTTTACACTCCCAGGATCTCTCTTTCGAGAG
GGAAAGAGAGGACAGAATGACTATGAGATAATAAGCCTGGTCCTTCTCCG
CCCCTCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1977:2466..3923-

>mRNA_P-wetherbeei_contig1977.3.1 ID=mRNA_P-wetherbeei_contig1977.3.1|Name=mRNA_P-wetherbeei_contig1977.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig1977:2466..3923- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGACGTCTCGTGGTTCAACCGCGGCTTCCCTCGGCTCGCCAAGCT
CGGATATGCACCAAAGTTCCAGGCACTCGCAGCACATTGGCCTCCGCGCT
CCACAAACGTGCAGAAATGGAGGAGTGCACAAGTGTTGCAGCTTTTGGAG
ATTTTGGGGCTCCAGTCCCTCGAGGGCTGCCTCCGCGAGCAAGAATTTCT
GCCGGAGGGCGACACGGAGGAGTCGCCGTTCGGCAGCCTCGACGCGCCGG
AGGTGGATGAGATTTTCAGCGGCAGCGGCGCCGACGCCGGCGAAGTCGAG
GCGCTCAAAGTCTCCCTCCGCTACCTGAAGGGCGAATTTTTCGACGTTTC
CGTCATGGCATAG
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