mRNA_P-wetherbeei_contig19722.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19722.2.1
Unique NamemRNA_P-wetherbeei_contig19722.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig19722.2.1 vs. uniprot
Match: A0A521MFI0_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521MFI0_9HYPH)

HSP 1 Score: 168 bits (426), Expect = 1.040e-50
Identity = 80/117 (68.38%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:    1 KSKYENSRRVATVASGSSDQIAKIWQRGMEAKNTINGDK-TIDYKVFDPSFLGGGDGGQIQNSNSAIYTLGRAMELNLDSAVRDTGIKRKLPGWGRDLFDPECERYVAPPTFPVKDA 348
            K+KY++SR +ATVASG SD+I++IWQRGM A+N IN DK T DYKV DPS+  G +GGQIQNSNSAIYTLG+AM+L+LD  +R  GI RK PGWGRDLFDP  +RY+A P FPVKDA
Sbjct:   95 KTKYDDSRHIATVASGPSDRISEIWQRGMGARNAINDDKRTFDYKVADPSYFLGSNGGQIQNSNSAIYTLGQAMKLDLDGPIRKAGIMRKFPGWGRDLFDPTYDRYLASPPFPVKDA 211
[Close]
BLAST of mRNA_P-wetherbeei_contig19722.2.1 vs. uniprot
Match: A0A1F2ZY37_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F2ZY37_9PROT)

HSP 1 Score: 134 bits (336), Expect = 2.500e-38
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 1 
Query:   13 ENSRRVATVASGSSDQIAKIWQRGMEAKNTINGDKTIDYKVFDPSFLGGGDGGQIQNSNSAIYTLGRAMELNLDSAVRDTGIKRKLPGWGRDLFDPECERYVAPPTFPVKDA 348
            ++++ ++TVASGS+D+I KIW RGM+A + I   K  DYK  D S+  G DGGQIQNSNS  +TLG+AM L+L +A+RD G+ R   GW RDL DP+ +RYVAPP FPVKDA
Sbjct:    3 KDTKTISTVASGSADEIRKIWSRGMQAADAITSRK-FDYKAHDLSYELGTDGGQIQNSNSVAFTLGKAMGLDLSAALRDKGMTRTFSGWDRDLLDPKYKRYVAPPVFPVKDA 113
[Close]
BLAST of mRNA_P-wetherbeei_contig19722.2.1 vs. uniprot
Match: A0A1F3ABB3_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F3ABB3_9PROT)

HSP 1 Score: 129 bits (323), Expect = 2.390e-35
Identity = 63/107 (58.88%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:   28 VATVASGSSDQIAKIWQRGMEAKNTINGDKTIDYKVFDPSFLGGGDGGQIQNSNSAIYTLGRAMELNLDSAVRDTGIKRKLPGWGRDLFDPECERYVAPPTFPVKDA 348
            VATV S S D+I KIW +G  A   I   K  DYK  D S+  G DGGQIQNSNS  +TLG+AM L+LD A+RD G+ R+  GWGRDL D + ERYVAPP FPV+DA
Sbjct:   87 VATVGSASKDEIDKIWAKGSAAAQAITAQK-FDYKAHDLSYELGTDGGQIQNSNSVAFTLGKAMGLDLDRAIRDAGMGRRFSGWGRDLLDSKYERYVAPPIFPVRDA 192
[Close]
BLAST of mRNA_P-wetherbeei_contig19722.2.1 vs. uniprot
Match: A0A521LW54_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LW54_9HYPH)

HSP 1 Score: 129 bits (323), Expect = 2.970e-35
Identity = 58/109 (53.21%), Postives = 79/109 (72.48%), Query Frame = 1 
Query:   22 RRVATVASGSSDQIAKIWQRGMEAKNTINGDKTIDYKVFDPSFLGGGDGGQIQNSNSAIYTLGRAMELNLDSAVRDTGIKRKLPGWGRDLFDPECERYVAPPTFPVKDA 348
            R+++ V SGS +++ K+W RG++  + IN  K  DYK  DP++  GG GG+IQNSNS  +TLG+AM L+L +A+RD G+ R   GW RDL DP+ +RYVAPP FPVKDA
Sbjct:   93 RKISAVGSGSREEMEKLWGRGVQTADAINSQK-FDYKAHDPAYEFGGRGGEIQNSNSVAFTLGKAMGLDLSAALRDKGMTRTFSGWDRDLLDPKYKRYVAPPVFPVKDA 200
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19722.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A521MFI0_9HYPH1.040e-5068.38Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
A0A1F2ZY37_9PROT2.500e-3857.14Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A1F3ABB3_9PROT2.390e-3558.88Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A521LW54_9HYPH2.970e-3553.21Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19722contigP-wetherbeei_contig19722:908..1261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size354
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.88212-CDS-P-wetherbeei_contig19722:907..12611683186179.88212-CDS-P-wetherbeei_contig19722:907..1261Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19722 908..1261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19722.2.1prot_P-wetherbeei_contig19722.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19722 908..1261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19722.2.1

>prot_P-wetherbeei_contig19722.2.1 ID=prot_P-wetherbeei_contig19722.2.1|Name=mRNA_P-wetherbeei_contig19722.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
KSKYENSRRVATVASGSSDQIAKIWQRGMEAKNTINGDKTIDYKVFDPSF
LGGGDGGQIQNSNSAIYTLGRAMELNLDSAVRDTGIKRKLPGWGRDLFDP
ECERYVAPPTFPVKDAS*
back to top

mRNA from alignment at P-wetherbeei_contig19722:908..1261-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19722.2.1 ID=mRNA_P-wetherbeei_contig19722.2.1|Name=mRNA_P-wetherbeei_contig19722.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig19722:908..1261- (Phaeothamnion wetherbeei SAG_119_79)
AAATCTAAATACGAGAACTCTCGCCGCGTCGCGACCGTAGCTTCCGGGTC
GTCCGATCAGATCGCCAAAATTTGGCAGCGCGGAATGGAGGCGAAGAATA
CCATCAACGGCGACAAGACGATCGACTACAAGGTGTTCGATCCGAGTTTC
CTTGGCGGCGGCGACGGCGGGCAAATCCAGAACAGCAATTCCGCGATCTA
CACGCTCGGCCGCGCCATGGAGCTCAACCTCGATAGCGCAGTCCGTGACA
CCGGTATCAAGCGGAAGTTGCCCGGCTGGGGTCGTGATCTGTTCGACCCG
GAATGTGAGCGATACGTGGCGCCACCCACGTTCCCGGTGAAGGATGCGTC
GTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19722:908..1261-

>mRNA_P-wetherbeei_contig19722.2.1 ID=mRNA_P-wetherbeei_contig19722.2.1|Name=mRNA_P-wetherbeei_contig19722.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig19722:908..1261- (Phaeothamnion wetherbeei SAG_119_79)
AAATCTAAATACGAGAACTCTCGCCGCGTCGCGACCGTAGCTTCCGGGTC
GTCCGATCAGATCGCCAAAATTTGGCAGCGCGGAATGGAGGCGAAGAATA
CCATCAACGGCGACAAGACGATCGACTACAAGGTGTTCGATCCGAGTTTC
CTTGGCGGCGGCGACGGCGGGCAAATCCAGAACAGCAATTCCGCGATCTA
CACGCTCGGCCGCGCCATGGAGCTCAACCTCGATAGCGCAGTCCGTGACA
CCGGTATCAAGCGGAAGTTGCCCGGCTGGGGTCGTGATCTGTTCGACCCG
GAATGTGAGCGATACGTGGCGCCACCCACGTTCCCGGTGAAGGATGCGTC
GTAG
back to top