mRNA_P-wetherbeei_contig19660.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19660.1.1
Unique NamemRNA_P-wetherbeei_contig19660.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19660.1.1 vs. uniprot
Match: D7FIL2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIL2_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.180e-20
Identity = 87/264 (32.95%), Postives = 113/264 (42.80%), Query Frame = 1 
Query:    1 VRALELGAGIGLVAVAAAALGWRVVATDRSAVLPLLHANVDANLPLLSYPGGSTAGSRSKNSNSSAVDEIVGSVTVCCHEWGGDTAAVMAAFAGLDGAAPLPVLSPEPVPTVGEPANIAGAPPQPPPPHPAMAKGTATPHAVPSKNLPPTAPAGESAEAAITEDLPAATGAAAATVVDAEFDVVLCADCLYAQSSVEPLLATLLRVCSAETVVLLANEMRSCLDIFVSQARRLGFDVTDVPLAERDMVVSRDGNRNPTPIALKR 792
            V ALELG+G+GLVA+ AA LGW  VA+D++  LPLL  NV                   K   SS      G+V V  ++WG D   ++                        E  N +G+             GT+                                           +D+V+CADC+YA +SVEPLLA+L +VC   TVVL+ NE+RS  D FV  AR LGF V DV + E  MVV    N+ P P+ALKR
Sbjct:  443 VSALELGSGVGLVAMTAALLGWEFVASDKADALPLLELNV-------------------KRCVSSTKRTCAGTVDVMEYDWGTDAKRLL------------------------EGRNSSGS-----------GDGTS-------------------------------------------YDLVICADCVYASASVEPLLASLCQVCDDNTVVLVTNELRSAFDEFVRGARVLGFQVEDVHVPEAQMVVDASTNQRPKPVALKR 609
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BLAST of mRNA_P-wetherbeei_contig19660.1.1 vs. uniprot
Match: A0A7S2DAL3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAL3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.210e-8
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:  499 AATGAAAATVVDAEFDVVLCADCLYAQSSVEPLLATL-LRVCSAETVVLLANEMRSCLDIFVSQARRLGFDVTDVPLAE 732
            AA+G      +   FDVV+CADCLYAQ+SVEPL+A L L V    T+V+++NE R+ ++ F+  AR  GF+VT + + E
Sbjct:   19 AASGVPEGVELRMPFDVVICADCLYAQASVEPLMAILELVVDPGRTLVVVSNEQRTAVESFLCLARTKGFEVTRMGIRE 97
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19660.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIL2_ECTSI1.180e-2032.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2DAL3_9STRA2.210e-846.84Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19660contigP-wetherbeei_contig19660:2..901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIL2
PFAMsMethyltransf_16
Model size900
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.52e-19
EggNOG OGsKOG2793@1|root,KOG2793@2759|Eukaryota
Descriptionlysine N-methyltransferase activity
Cds size582
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186178.2959585-UTR-P-wetherbeei_contig19660:1..2651683186178.2959585-UTR-P-wetherbeei_contig19660:1..265Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19660 2..265 +
1683186178.311658-UTR-P-wetherbeei_contig19660:847..9011683186178.311658-UTR-P-wetherbeei_contig19660:847..901Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19660 848..901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186178.3041701-CDS-P-wetherbeei_contig19660:265..8471683186178.3041701-CDS-P-wetherbeei_contig19660:265..847Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19660 266..847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19660.1.1prot_P-wetherbeei_contig19660.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19660 266..847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19660.1.1

>prot_P-wetherbeei_contig19660.1.1 ID=prot_P-wetherbeei_contig19660.1.1|Name=mRNA_P-wetherbeei_contig19660.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp
MAAFAGLDGAAPLPVLSPEPVPTVGEPANIAGAPPQPPPPHPAMAKGTAT
PHAVPSKNLPPTAPAGESAEAAITEDLPAATGAAAATVVDAEFDVVLCAD
CLYAQSSVEPLLATLLRVCSAETVVLLANEMRSCLDIFVSQARRLGFDVT
DVPLAERDMVVSRDGNRNPTPIALKRATLARRQQLSQPPLQRG*
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mRNA from alignment at P-wetherbeei_contig19660:2..901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19660.1.1 ID=mRNA_P-wetherbeei_contig19660.1.1|Name=mRNA_P-wetherbeei_contig19660.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=900bp|location=Sequence derived from alignment at P-wetherbeei_contig19660:2..901+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGGGCGTTGGAGTTGGGTGCCGGAATTGGGCTGGTGGCGGTGGCGGC
GGCGGCGTTGGGTTGGCGGGTCGTGGCGACGGATCGCTCAGCGGTGCTGC
CACTGCTGCATGCAAACGTCGACGCCAACCTGCCACTTCTTTCCTATCCC
GGCGGCAGCACCGCTGGGAGCCGCAGTAAAAACAGTAACAGCAGTGCGGT
CGATGAAATCGTGGGATCCGTTACGGTCTGCTGCCACGAGTGGGGCGGCG
ACACTGCAGCTGTGATGGCCGCTTTTGCGGGCTTAGATGGAGCGGCACCG
TTGCCGGTGCTGTCGCCGGAACCGGTTCCCACGGTGGGTGAGCCTGCCAA
CATAGCAGGGGCACCTCCACAGCCGCCACCACCGCACCCAGCAATGGCGA
AAGGAACGGCGACGCCGCATGCGGTGCCGTCTAAAAACTTGCCGCCGACA
GCACCAGCAGGTGAATCTGCCGAAGCAGCCATCACTGAAGATTTGCCGGC
GGCAACGGGGGCAGCGGCGGCAACGGTGGTGGATGCGGAATTCGACGTGG
TGCTTTGCGCTGATTGCCTGTACGCGCAGAGCTCCGTGGAGCCGCTCCTG
GCCACGCTCCTCCGCGTCTGCAGCGCCGAGACGGTCGTCCTCCTCGCCAA
CGAGATGCGGTCGTGCCTCGACATCTTTGTGTCGCAGGCCCGCCGCCTCG
GCTTCGACGTGACGGACGTGCCGCTGGCCGAGCGGGACATGGTGGTCAGC
CGCGACGGGAACCGCAACCCGACGCCGATCGCGCTCAAGCGGGCGACACT
GGCACGGCGGCAGCAATTGTCCCAGCCACCGCTGCAGCGGGGGTAGCAGC
AATCGCGGCTTTCATCTAAGTCATCTAATAACCGCATGATTCCACATATA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19660:2..901+

>mRNA_P-wetherbeei_contig19660.1.1 ID=mRNA_P-wetherbeei_contig19660.1.1|Name=mRNA_P-wetherbeei_contig19660.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig19660:2..901+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCTTTTGCGGGCTTAGATGGAGCGGCACCGTTGCCGGTGCTGTC
GCCGGAACCGGTTCCCACGGTGGGTGAGCCTGCCAACATAGCAGGGGCAC
CTCCACAGCCGCCACCACCGCACCCAGCAATGGCGAAAGGAACGGCGACG
CCGCATGCGGTGCCGTCTAAAAACTTGCCGCCGACAGCACCAGCAGGTGA
ATCTGCCGAAGCAGCCATCACTGAAGATTTGCCGGCGGCAACGGGGGCAG
CGGCGGCAACGGTGGTGGATGCGGAATTCGACGTGGTGCTTTGCGCTGAT
TGCCTGTACGCGCAGAGCTCCGTGGAGCCGCTCCTGGCCACGCTCCTCCG
CGTCTGCAGCGCCGAGACGGTCGTCCTCCTCGCCAACGAGATGCGGTCGT
GCCTCGACATCTTTGTGTCGCAGGCCCGCCGCCTCGGCTTCGACGTGACG
GACGTGCCGCTGGCCGAGCGGGACATGGTGGTCAGCCGCGACGGGAACCG
CAACCCGACGCCGATCGCGCTCAAGCGGGCGACACTGGCACGGCGGCAGC
AATTGTCCCAGCCACCGCTGCAGCGGGGGTAG
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