mRNA_P-wetherbeei_contig19569.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19569.1.1
Unique NamemRNA_P-wetherbeei_contig19569.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19569.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19569contigP-wetherbeei_contig19569:45..599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size555
Hectar predicted targeting categoryother localisation
Exons1
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.2533827-UTR-P-wetherbeei_contig19569:44..651683186176.2533827-UTR-P-wetherbeei_contig19569:44..65Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19569 45..65 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.270303-CDS-P-wetherbeei_contig19569:65..5991683186176.270303-CDS-P-wetherbeei_contig19569:65..599Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19569 66..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19569.1.1prot_P-wetherbeei_contig19569.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19569 66..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19569.1.1

>prot_P-wetherbeei_contig19569.1.1 ID=prot_P-wetherbeei_contig19569.1.1|Name=mRNA_P-wetherbeei_contig19569.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
MEARAAELRDAALDAAAPAPRIRVHDPIAEARREAEEEAREAEQREAALD
AMASTRAAQEAAALAAREAAREAEEAAFRQAVHAAALEAEAEAAAAREIA
LAVQAAAEREAARMQEVAAREAESRAEGGLTASEAPDAQAAEDPAASEEG
ATAEAVFAAQRAAAREAALAREQMSEGP
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mRNA from alignment at P-wetherbeei_contig19569:45..599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19569.1.1 ID=mRNA_P-wetherbeei_contig19569.1.1|Name=mRNA_P-wetherbeei_contig19569.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig19569:45..599+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCCCGCCGTGAAGCGGAGATGGAGGCTCGAGCCGCCGAGCTTCGCGA
CGCTGCCCTCGACGCCGCGGCACCGGCGCCCAGGATCAGAGTCCACGATC
CAATCGCAGAAGCCCGCCGTGAGGCCGAAGAGGAAGCTCGCGAGGCGGAG
CAGCGCGAGGCTGCTCTGGATGCCATGGCGAGCACGAGGGCAGCTCAGGA
AGCAGCCGCTCTGGCAGCCCGCGAGGCGGCTCGCGAGGCCGAGGAAGCGG
CTTTCCGCCAGGCTGTTCACGCCGCCGCCCTGGAGGCCGAAGCCGAGGCC
GCGGCGGCTCGGGAAATCGCGCTGGCCGTGCAAGCAGCAGCCGAGCGGGA
GGCGGCCCGGATGCAAGAAGTCGCCGCTCGCGAAGCGGAGTCTCGCGCCG
AGGGCGGTCTCACCGCTTCGGAGGCTCCCGACGCGCAAGCAGCGGAAGAC
CCTGCTGCCTCGGAAGAAGGGGCGACCGCCGAAGCGGTCTTCGCCGCGCA
ACGGGCAGCAGCTCGGGAGGCTGCCCTGGCCAGAGAGCAGATGTCGGAGG
GCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19569:45..599+

>mRNA_P-wetherbeei_contig19569.1.1 ID=mRNA_P-wetherbeei_contig19569.1.1|Name=mRNA_P-wetherbeei_contig19569.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig19569:45..599+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCTCGAGCCGCCGAGCTTCGCGACGCTGCCCTCGACGCCGCGGC
ACCGGCGCCCAGGATCAGAGTCCACGATCCAATCGCAGAAGCCCGCCGTG
AGGCCGAAGAGGAAGCTCGCGAGGCGGAGCAGCGCGAGGCTGCTCTGGAT
GCCATGGCGAGCACGAGGGCAGCTCAGGAAGCAGCCGCTCTGGCAGCCCG
CGAGGCGGCTCGCGAGGCCGAGGAAGCGGCTTTCCGCCAGGCTGTTCACG
CCGCCGCCCTGGAGGCCGAAGCCGAGGCCGCGGCGGCTCGGGAAATCGCG
CTGGCCGTGCAAGCAGCAGCCGAGCGGGAGGCGGCCCGGATGCAAGAAGT
CGCCGCTCGCGAAGCGGAGTCTCGCGCCGAGGGCGGTCTCACCGCTTCGG
AGGCTCCCGACGCGCAAGCAGCGGAAGACCCTGCTGCCTCGGAAGAAGGG
GCGACCGCCGAAGCGGTCTTCGCCGCGCAACGGGCAGCAGCTCGGGAGGC
TGCCCTGGCCAGAGAGCAGATGTCGGAGGGCCCG
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