mRNA_P-wetherbeei_contig1956.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1956.1.1
Unique NamemRNA_P-wetherbeei_contig1956.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1956.1.1 vs. uniprot
Match: D7G3Q2_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Q2_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.380e-18
Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:   25 HLSSDRQTFVNTLISFVGAGILGLPYAFRQGGMAMSTAVLLIVGGLSLYCMLLLVECRRWLVQLSG 222
            HLSSDR+TFVN LISFVGAG+LG+P+AFRQGG+ +ST VL +VG +  YCM +LV C+  ++ L G
Sbjct:   76 HLSSDRRTFVNLLISFVGAGVLGIPFAFRQGGLLLSTGVLSMVGVVCTYCMWMLVRCKYRVIALRG 141
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BLAST of mRNA_P-wetherbeei_contig1956.1.1 vs. uniprot
Match: H6S441_PLAVT (Aminoacid transporter (Fragment) n=1 Tax=Plasmopara viticola TaxID=143451 RepID=H6S441_PLAVT)

HSP 1 Score: 75.9 bits (185), Expect = 3.330e-15
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   25 HLSSDRQTFVNTLISFVGAGILGLPYAFRQGGMAMSTAVLLIVGGLSLYCMLLLVECRRWLVQ 213
            HLSSD +TF+NT I+F+G+G+LGLPYAFRQ G+ M    L+IV  LS Y MLL+V+C+  L Q
Sbjct:   67 HLSSDLKTFINTCIAFLGSGVLGLPYAFRQCGILMGLVTLVIVAALSTYSMLLVVQCKYKLQQ 129
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BLAST of mRNA_P-wetherbeei_contig1956.1.1 vs. uniprot
Match: A0A8K1CFQ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFQ4_PYTOL)

HSP 1 Score: 72.8 bits (177), Expect = 2.750e-13
Identity = 32/58 (55.17%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:   25 HLSSDRQTFVNTLISFVGAGILGLPYAFRQGGMAMSTAVLLIVGGLSLYCMLLLVECR 198
            HL+SD +TF NT+I+F+G+G+LGLPYAFRQ G+ +  A L+ V  +S Y MLL+V+C+
Sbjct:  290 HLASDTRTFANTIIAFLGSGVLGLPYAFRQCGILLGLATLIFVASISTYAMLLVVQCK 347
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BLAST of mRNA_P-wetherbeei_contig1956.1.1 vs. uniprot
Match: A0A835UUZ1_VANPL (Aa_trans domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UUZ1_VANPL)

HSP 1 Score: 70.1 bits (170), Expect = 6.670e-13
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   25 HLSSDRQTFVNTLISFVGAGILGLPYAFRQGGMAMSTAVLLIVGGLSLYCMLLLVECRR 201
            HLSS  +TF N  I+ VGAG+LGLPYAF++ G A  T +LL VG L+ +CM+LLV  RR
Sbjct:   34 HLSSQPKTFANVFIAIVGAGVLGLPYAFKRTGWAAGTLMLLAVGALTYHCMMLLVRTRR 92
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BLAST of mRNA_P-wetherbeei_contig1956.1.1 vs. uniprot
Match: A0A2K2AXP4_POPTR (Aa_trans domain-containing protein n=4 Tax=Populus TaxID=3689 RepID=A0A2K2AXP4_POPTR)

HSP 1 Score: 71.2 bits (173), Expect = 9.030e-13
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   28 LSSDRQTFVNTLISFVGAGILGLPYAFRQGGMAMSTAVLLIVGGLSLYCMLLLVECRRWLVQLSG 222
            LSS  +TF N  I+ VGAG+LGLPYAF++ G  MS  +L  V GL+ YCM+LL+  RR L  LSG
Sbjct:   29 LSSQSKTFANVFIAIVGAGVLGLPYAFKRTGWIMSLMMLFSVAGLTHYCMMLLIHTRRKLQSLSG 93
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BLAST of mRNA_P-wetherbeei_contig1956.1.1 vs. uniprot
Match: K3X1R2_GLOUD (Aa_trans domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1R2_GLOUD)

HSP 1 Score: 69.7 bits (169), Expect = 3.190e-12
Identity = 29/58 (50.00%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   25 HLSSDRQTFVNTLISFVGAGILGLPYAFRQGGMAMSTAVLLIVGGLSLYCMLLLVECR 198
            HL+SD +TF + +ISF+G+G+LG P+AF+Q G+ +  A+L++VG +S +CMLL+V+C+
Sbjct:   44 HLASDAKTFASAIISFLGSGVLGFPFAFKQTGIILGLALLVLVGVISTFCMLLVVKCK 101
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BLAST of mRNA_P-wetherbeei_contig1956.1.1 vs. uniprot
Match: A0A5D6Y5H3_9STRA (Aa_trans domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5H3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.270e-12
Identity = 31/58 (53.45%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:   25 HLSSDRQTFVNTLISFVGAGILGLPYAFRQGGMAMSTAVLLIVGGLSLYCMLLLVECR 198
            HL+SD +TF NT+I+F+G+G+LGLP+AFRQ G+ +  A L+ V  +S Y MLL+V+C+
Sbjct:   69 HLTSDARTFANTIIAFLGSGMLGLPFAFRQCGILLGLATLVFVAAVSTYAMLLVVQCK 126
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BLAST of mRNA_P-wetherbeei_contig1956.1.1 vs. uniprot
Match: A0A6A2X0Y9_HIBSY (Amino acid transporter ANTL2 n=3 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X0Y9_HIBSY)

HSP 1 Score: 69.3 bits (168), Expect = 4.360e-12
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   28 LSSDRQTFVNTLISFVGAGILGLPYAFRQGGMAMSTAVLLIVGGLSLYCMLLLVECRR 201
            LSS  +TF N LI+ VGAG+LGLPYAF++ G AM   +L  V GLS YCM+LL+  RR
Sbjct:   34 LSSKSKTFANVLIAIVGAGVLGLPYAFKRTGWAMGLLLLFSVAGLSTYCMMLLIHTRR 91
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BLAST of mRNA_P-wetherbeei_contig1956.1.1 vs. uniprot
Match: A0A2I0WTU6_9ASPA (Lysine histidine transporter-like 3 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WTU6_9ASPA)

HSP 1 Score: 68.9 bits (167), Expect = 5.890e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   25 HLSSDRQTFVNTLISFVGAGILGLPYAFRQGGMAMSTAVLLIVGGLSLYCMLLLVECRRWLVQLSG 222
            +LSS  +TF N  I+ VGAG+LGLPYAF++ G A  T +LL+VG L+ +CM+LL   RR L +  G
Sbjct:   32 YLSSQPKTFANVFIAIVGAGVLGLPYAFKRTGWAAGTLMLLVVGALTYHCMMLLTRTRRRLEEEVG 97
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BLAST of mRNA_P-wetherbeei_contig1956.1.1 vs. uniprot
Match: A0A5N6QP15_9ROSI (Aa_trans domain-containing protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QP15_9ROSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.520e-11
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   28 LSSDRQTFVNTLISFVGAGILGLPYAFRQGGMAMSTAVLLIVGGLSLYCMLLLVECRRWLVQLSG 222
            LSS  +TF N  I+ VGAG+LGLPYAF++ G  MS  +L  V GL+ +CM+LLV  RR L  +SG
Sbjct:   31 LSSQSKTFANVFIAIVGAGVLGLPYAFKRTGWLMSLLMLAAVAGLTHHCMMLLVYTRRKLESVSG 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1956.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Q2_ECTSI2.380e-1862.12Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
H6S441_PLAVT3.330e-1558.73Aminoacid transporter (Fragment) n=1 Tax=Plasmopar... [more]
A0A8K1CFQ4_PYTOL2.750e-1355.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835UUZ1_VANPL6.670e-1357.63Aa_trans domain-containing protein n=1 Tax=Vanilla... [more]
A0A2K2AXP4_POPTR9.030e-1355.38Aa_trans domain-containing protein n=4 Tax=Populus... [more]
K3X1R2_GLOUD3.190e-1250.00Aa_trans domain-containing protein n=1 Tax=Globisp... [more]
A0A5D6Y5H3_9STRA3.270e-1253.45Aa_trans domain-containing protein n=1 Tax=Pythium... [more]
A0A6A2X0Y9_HIBSY4.360e-1258.62Amino acid transporter ANTL2 n=3 Tax=Hibiscus syri... [more]
A0A2I0WTU6_9ASPA5.890e-1251.52Lysine histidine transporter-like 3 n=1 Tax=Dendro... [more]
A0A5N6QP15_9ROSI1.520e-1153.85Aa_trans domain-containing protein n=1 Tax=Carpinu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1956contigP-wetherbeei_contig1956:31..840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3Q2
PFAMsAa_trans
Model size222
Max annot lvl2759|Eukaryota
KEGG koko:K10569,ko:K14209
KEGG TC2.A.18.8
KEGG Pathwayko03410,ko04138,map03410,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0009605,GO:0009607,GO:0009624,GO:0012505,GO:0015075,GO:0015171,GO:0015173,GO:0015175,GO:0015318,GO:0015711,GO:0015801,GO:0015804,GO:0015849,GO:0016020,GO:0022857,GO:0031090,GO:0031984,GO:0034220,GO:0042175,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0071702,GO:0071705,GO:0098588,GO:0098656,GO:0098805,GO:0098827,GO:1903825,GO:1905039
Exons2
Evalue3.91e-19
EggNOG OGsCOG0814@1|root,KOG1304@2759|Eukaryota
Ec32 ortholog descriptionAmino acid transporter, transmembrane
Ec32 orthologEc-00_006790.1
Descriptionamino acid transmembrane transporter activity
Cds size222
COG categoryE
BRITEko00000,ko00001,ko02000,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186175.9913206-CDS-P-wetherbeei_contig1956:30..1381683186175.9913206-CDS-P-wetherbeei_contig1956:30..138Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1956 31..138 -
1683186176.0029395-CDS-P-wetherbeei_contig1956:726..8401683186176.0029395-CDS-P-wetherbeei_contig1956:726..840Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1956 727..840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1956.1.1prot_P-wetherbeei_contig1956.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1956 31..840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1956.1.1

>prot_P-wetherbeei_contig1956.1.1 ID=prot_P-wetherbeei_contig1956.1.1|Name=mRNA_P-wetherbeei_contig1956.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
MDDAADHDHLSSDRQTFVNTLISFVGAGILGLPYAFRQGGMAMSTAVLLI
VGGLSLYCMLLLVECRRWLVQLSG
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mRNA from alignment at P-wetherbeei_contig1956:31..840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1956.1.1 ID=mRNA_P-wetherbeei_contig1956.1.1|Name=mRNA_P-wetherbeei_contig1956.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig1956:31..840- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGATGCGGCAGATCACGACCATTTGAGCTCCGACCGACAGACGTT
CGTCAACACGCTAATTTCCTTCGTCGGCGCCGGCATCCTCGGGCTGCCAT
ACGCCTTTCGGCAGGTGAACGAGGCCAAAGAACGCGGCGCATCCCGTTAG
TATTCGTAGCGTCCTCCGGGGTTTTCTTCATACTTTGGGGGCGTTTCTGT
CTTTTGATCGCCAAGAGTATGCTGGTAGCTGTTGTTCCGGCAAATTCTTT
GCGGTTTGGCTGGATGGAGTGGATGACCGCCCATTCACACATTCTCCTCG
TCGTCTTTGGTTTTATTCAAGCCGATGTTGGAGTTTCTCAGGTCTTTCTT
TTAAATCGGGGTTTCAGTTGACGTTTTCTTGTCAGTGCTTGTCTTGTCTC
TGTTCGACGGTGTCAGCAGAAGGCGCTCCAGCTCTCTGTAGGATAGCACG
TTGGTGTTGCCAGCGGCGCTGTTTGTTTGTTTGTCGGGGCCAGCGTTTTG
GACCGTGCATTGCATTCGATAAGTCGCATAAAGTGACACGCGCTCAGGAT
TAGCAACTTAGCTGCCTATGGACGGAAAGAGAGGGAAACAACAGGTTTGA
TTCCTCCGTTTCGTGCCGAATGCCTTCAGCTCAAGTAGCTTACCAAGACC
TCCGCTCTCTCATCCCCGTTGCTGCTGCGCGTTCCCGGCTTTCACCCTGC
AGGGCGGCATGGCAATGTCGACGGCGGTGCTGCTAATCGTCGGCGGCCTC
AGCCTGTACTGCATGCTGCTCCTGGTGGAATGCCGGCGGTGGCTGGTGCA
GCTCAGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1956:31..840-

>mRNA_P-wetherbeei_contig1956.1.1 ID=mRNA_P-wetherbeei_contig1956.1.1|Name=mRNA_P-wetherbeei_contig1956.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig1956:31..840- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGATGCGGCAGATCACGACCATTTGAGCTCCGACCGACAGACGTT
CGTCAACACGCTAATTTCCTTCGTCGGCGCCGGCATCCTCGGGCTGCCAT
ACGCCTTTCGGCAGGGCGGCATGGCAATGTCGACGGCGGTGCTGCTAATC
GTCGGCGGCCTCAGCCTGTACTGCATGCTGCTCCTGGTGGAATGCCGGCG
GTGGCTGGTGCAGCTCAGCGGC
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