mRNA_P-wetherbeei_contig19520.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19520.1.1 vs. uniprot
Match: UPI001BAA044A (hypothetical protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BAA044A) HSP 1 Score: 265 bits (678), Expect = 8.870e-86 Identity = 156/263 (59.32%), Postives = 175/263 (66.54%), Query Frame = 1
Query: 1 VRVAGWILLIAGALLCATLVWATLGFLLMGIGLLSLLVAENNRKRTGRPNVNVVHVDEPMMAPPXXXXXXXXXEPEPLVRREPPMGTSPPVPSYDRQAWQQLVESDADLAAVASVLADYGHQYVDELAREYLAVADKTRLPAIVDGIVGRAGARVAPRGNPEPSEVKPVSNVRRSNLMAPRPDRQPMPLPPAKQKISETLPDPALQPVAPVTQETASAPVPSPMAVEPVLDAGDLNKTIVSADDELTAMLGRLSGDAATQGKN 789
VRVAGWILLIAGALLC TLVWAT+GFLLMG+GLLSLLVAEN R+R ++ DE M PP PEP+V EP SPP SYDRQAW+QLVESDADLA + SVLADYG QYVDELA EY+A DK RLPAIV+GI+GRA APRGN + N ++ A RPDR P LP A K+SE PD A PV P QE P P AV+P GD NKTI+SADDELTAMLG+LS DAAT K+
Sbjct: 11 VRVAGWILLIAGALLCVTLVWATVGFLLMGVGLLSLLVAENKRRRVSVATLSRAPADERMAQPPV---------PEPVVSHEPLKPISPPAVSYDRQAWRQLVESDADLARITSVLADYGQQYVDELASEYMADVDKQRLPAIVEGIIGRASKSAAPRGNGRLAVDDRPPNPVGASTAARRPDRPPKLLPEATLKLSEKSPDSAASPVEPAKQEAIGVPAEPPTAVDPAPGEGDRNKTIISADDELTAMLGKLSADAATPTKS 264
BLAST of mRNA_P-wetherbeei_contig19520.1.1 vs. uniprot
Match: UPI001BA924E7 (hypothetical protein n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0222 TaxID=2807668 RepID=UPI001BA924E7) HSP 1 Score: 264 bits (675), Expect = 6.700e-85 Identity = 156/259 (60.23%), Postives = 173/259 (66.80%), Query Frame = 1
Query: 4 RVAGWILLIAGALLCATLVWATLGFLLMGIGLLSLLVAENNRKRTGRPNVNVVHVDEPMMAPPXXXXXXXXXEPEPLVRREPPMGTSPPVPSYDRQAWQQLVESDADLAAVASVLADYGHQYVDELAREYLAVADKTRLPAIVDGIVGRAGARVAPRGNPEP-SEVKPVSNVRRSNLMAPRPDRQPMPLPPAKQKISETLPDPALQPVAPVTQETASAPVPSPMAVEPVLDAGDLNKTIVSADDELTAMLGRLSGDAAT 777
RV GWILLIAGALLCATLVWAT+GFLLMG+GLLSLLVAENNR+R + DE M PP PEPLV REPP SPP SYD QAW+QLVESD DLA + SVLADYG QYVDELA EY+A DK RLPAIV+GI+GRA VAPRGN P E +P S+ A R DR PLP + K+SE PD A PV P QE AP P AV+P D NKTI+SAD+ELT MLG+LS DAAT
Sbjct: 2 RVTGWILLIAGALLCATLVWATVGFLLMGVGLLSLLVAENNRQRVSVTTLGRAPADERMAQPPV---------PEPLVSREPPKPISPPAVSYDSQAWRQLVESDVDLARITSVLADYGQQYVDELACEYMADIDKQRLPAIVEGIIGRASKSVAPRGNGMPVDEARPPVG---SSTAARRLDRTSRPLPESTLKLSEKSPDSAFSPVEPAKQEAIGAPTEPPTAVDPAAGEADRNKTIISADEELTTMLGKLSADAAT 248
BLAST of mRNA_P-wetherbeei_contig19520.1.1 vs. uniprot
Match: UPI001BAB6653 (hypothetical protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BAB6653) HSP 1 Score: 245 bits (626), Expect = 5.160e-78 Identity = 152/264 (57.58%), Postives = 170/264 (64.39%), Query Frame = 1
Query: 4 RVAGWILLIAGALLCATLVWATLGFLLMGIGLLSLLVAENNRKRTGRPNVNVVHVDEPMMAPPXXXXXXXXXEPEPLVRR-EPPMGTSPPVPSYDRQAWQQLVESDADLAAVASVLADYGHQYVDELAREYLAVADKTRLPAIVDGIVGRAGARVAPRGNPEPSEVKPVSNVRRSNLMAPRPDRQPMPLPPAKQKISETLPDPALQPVAPVTQ-ETASAPVPSPMAVEPVLDAGDLNKTIVSADDELTAMLGRLSGDAATQGKN 789
RVAGWILLIAGALLCATLVWAT+GFLLMG+GLLSLLVAEN R+R ++ DE + P PEP+V EPP SPP SYDRQAW+QLVESD DLA + SVLADYG QYVDELA EYLA DK RLPAIVDGI+GRA V PRGN + N S A RPDR PL K+SE D A PV P + E AP P AV+P GD NKTI+SAD+ELT MLG+LS DAAT K+
Sbjct: 2 RVAGWILLIAGALLCATLVWATVGFLLMGVGLLSLLVAENKRRRVSVATLSRAPADERLAQP---------KVPEPVVSYDEPPKPISPPAVSYDRQAWRQLVESDVDLARITSVLADYGQQYVDELAGEYLADIDKQRLPAIVDGIIGRASKSVVPRGNGRLAVDARPPNPVGSATAARRPDRPSTPLREPTLKLSEKSSDSASSPVEPARRLEAIGAPAEPPTAVDPAPGEGDSNKTIISADEELTVMLGKLSADAATPSKS 256
BLAST of mRNA_P-wetherbeei_contig19520.1.1 vs. uniprot
Match: UPI001BA8CB00 (hypothetical protein n=1 Tax=Bradyrhizobium sp. JYMT SZCCT0428 TaxID=2807673 RepID=UPI001BA8CB00) HSP 1 Score: 239 bits (611), Expect = 8.200e-76 Identity = 146/262 (55.73%), Postives = 165/262 (62.98%), Query Frame = 1
Query: 4 RVAGWILLIAGALLCATLVWATLGFLLMGIGLLSLLVAENNRKRTGRPNVNVVHVDEPMMAPPXXXXXXXXXEPEPLVRREPPMGTSPPVPSYDRQAWQQLVESDADLAAVASVLADYGHQYVDELAREYLAVADKTRLPAIVDGIVGRAGARVAPRGNPEPSEVKPVSNVRRSNLMAPRPDRQPMPLPPAKQKISETLPDPALQPVAPVTQETASAPVPSPMAVEPVLDAGDLNKTIVSADDELTAMLGRLSGDAATQGKN 789
RVAGWILLIAGALLC TLVWAT+GFLLMG+GLLSLLVAEN R+R ++ DE M PP PEPLV R+PP SPP SYD QAW+QLVESD DLA V SVLADYG QYVDELA EYLA DK RLPAIV+GI+GRA VAP G+ ++ N S+ A K+SE PD A PV P Q A P AV+P D NKTI+SAD+ELTAMLG+LS DAAT K+
Sbjct: 2 RVAGWILLIAGALLCVTLVWATVGFLLMGVGLLSLLVAENRRRRVSVSTLSRAPADESMAQPPV---------PEPLVSRDPPKPISPPAVSYDMQAWRQLVESDVDLARVTSVLADYGQQYVDELAGEYLADIDKQRLPAIVEGIIGRASKSVAPHGDGRLADDARPPNPAGSSTTARXXXXXXXXX---TLKLSEKSPDSASSPVEPARQAAAGTPAEPSTAVDPAAGEADSNKTIISADEELTAMLGKLSADAATPSKS 251
BLAST of mRNA_P-wetherbeei_contig19520.1.1 vs. uniprot
Match: UPI001BAB13A7 (hypothetical protein n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0177 TaxID=2807665 RepID=UPI001BAB13A7) HSP 1 Score: 239 bits (609), Expect = 1.400e-75 Identity = 147/263 (55.89%), Postives = 168/263 (63.88%), Query Frame = 1
Query: 1 VRVAGWILLIAGALLCATLVWATLGFLLMGIGLLSLLVAENNRKRTGRPNVNVVHVDEPMMAPPXXXXXXXXXEPEPLVRREPPMGTSPPVPSYDRQAWQQLVESDADLAAVASVLADYGHQYVDELAREYLAVADKTRLPAIVDGIVGRAGARVAPRGNPEPSEVKPVSNVRRSNLMAPRPDRQPMPLPPAKQKISETLPDPALQPVAPVTQETASAPVPSPMAVEPVLDAGDLNKTIVSADDELTAMLGRLSGDAATQGKN 789
VRVAGWILLIAGALLC TLVWAT+GFLLMG+GLLSLLVAEN R+R + DE M PP PEP+V EPP SPP SYDRQAW+QLVESD DLA + SVLADYG QYVDELA EY+A DK RLPAIV+GI+GRA VAPRGN + V + R N + + PLP + K+SE D A PV P QE A P A D N+TI+SAD+ELTAMLG+LS DAAT K+
Sbjct: 2 VRVAGWILLIAGALLCVTLVWATVGFLLMGVGLLSLLVAENRRRRVSVTTLGRAPADERMAQPPV---------PEPVVSHEPPKPISPPAVSYDRQAWRQLVESDVDLARITSVLADYGQQYVDELACEYMADVDKQRLPAIVEGIIGRASESVAPRGN-----GRLVDDARPPNPVGGATAARRRPLPESTLKLSEKSLDSASSPVEPAKQEAVGAHAAPPTAA----GEEDRNETIISADEELTAMLGKLSADAATPNKS 246
BLAST of mRNA_P-wetherbeei_contig19520.1.1 vs. uniprot
Match: UPI001E37B1AF (hypothetical protein n=1 Tax=Bradyrhizobium oropedii TaxID=1571201 RepID=UPI001E37B1AF) HSP 1 Score: 131 bits (329), Expect = 1.410e-34 Identity = 77/151 (50.99%), Postives = 94/151 (62.25%), Query Frame = 1
Query: 4 RVAGWILLIAGALLCATLVWATLGFLLMGIGLLSLLVAENNRKRT-GRPNVNVVHVDEPMMAPPXXXXXXXXXEPEPLVRREPPMGTSPPVPSYDRQAWQQLVESDADLAAVASVLADYGHQYVDELAREYLAVADKTRLPAIVDGIVGRA 453
R+ GW+LL+ G LLCAT+ WA LGFLLMGIGL+SL VAE R++T G + + P + +P P T P YDR+ W++LVESD DLA +A VLADYG QYVDELA YLA DK+RL AIVDGI+ RA
Sbjct: 2 RLTGWVLLLIGGLLCATISWAALGFLLMGIGLISLQVAERRRRQTDGTSGFTPPRLSAGLQPPTLDPGQDTGPQHQPRRVAWPDKKTDAP---YDRETWRRLVESDPDLAQLAKVLADYGPQYVDELAASYLAAPDKSRLGAIVDGIIARA 149
BLAST of mRNA_P-wetherbeei_contig19520.1.1 vs. uniprot
Match: A0A401TUD6_CHIPU (Uncharacterized protein (Fragment) n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401TUD6_CHIPU) HSP 1 Score: 132 bits (333), Expect = 4.290e-34 Identity = 85/171 (49.71%), Postives = 103/171 (60.23%), Query Frame = 1
Query: 1 VRVAGWILLIAGALLCATLVWATLGFLLMGIGLLSLLVAENNRKRTGRPNVNVVHVDEPMMAPPXXXXXXXXXEPEPLV------RREP-------PMGTSPPVPSYDRQAWQQLVESDADLAAVASVLADYGHQYVDELAREYLAVADKTRLPAIVDGIVGRA-GARVAP 471
VR+ GW+LL+ G LLCAT+ WA LGFLLMGIGL+SL VAE R+R R V PP +P+ +R+P G +P YDRQAW++LVESD DLA +A VL+DYG QYVDELA YLA DK+RL AIVDGI+ RA G + AP
Sbjct: 21 VRLTGWVLLLIGGLLCATISWAALGFLLMGIGLISLQVAERRRRREDR----AVPAGTTGFTPPRLSPGLQPPTLDPVAGQDTGPQRQPRRVAWPDKKGEAP----YDRQAWRRLVESDPDLAQIAKVLSDYGPQYVDELATSYLAAPDKSRLSAIVDGIIARARGGQPAP 183
BLAST of mRNA_P-wetherbeei_contig19520.1.1 vs. uniprot
Match: UPI001BA884CE (hypothetical protein n=1 Tax=Bradyrhizobium tropiciagri TaxID=312253 RepID=UPI001BA884CE) HSP 1 Score: 134 bits (338), Expect = 2.050e-33 Identity = 83/173 (47.98%), Postives = 106/173 (61.27%), Query Frame = 1
Query: 4 RVAGWILLIAGALLCATLVWATLGFLLMGIGLLSLLVAENNRKRTGRPNVNVVHVDEPMMA----PPXXXXXXXXXEPEPLVRREPPMGTSPPVPS----YDRQAWQQLVESDADLAAVASVLADYGHQYVDELAREYLAVADKTRLPAIVDGIVGRAGARVAPRGNPEPSEV 498
R+ GWILL+ GAL CAT+ WA +GFLLMG+GL++L VAE ++R + P + PP P+ L RR + P PS YDR+AW++LVESD+D+A +A+VLADYG QYVDELA YLA+ DK+RL AIVDGIV RA P P+P E
Sbjct: 2 RLTGWILLLIGALACATIAWAAVGFLLMGVGLIALQVAERRKRRAEVAPAAPTGLTPPSVGAGLQPPVFEPVPHDGAPQRLPRR-----MAWPAPSNDAPYDREAWRRLVESDSDIAQIANVLADYGPQYVDELAASYLAMPDKSRLAAIVDGIVARA-RDTQPAPPPKPIEA 168
BLAST of mRNA_P-wetherbeei_contig19520.1.1 vs. uniprot
Match: A0A4Q7FV56_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium sp. Leo121 TaxID=1571195 RepID=A0A4Q7FV56_9BRAD) HSP 1 Score: 131 bits (329), Expect = 6.230e-33 Identity = 97/264 (36.74%), Postives = 140/264 (53.03%), Query Frame = 1
Query: 4 RVAGWILLIAGALLCATLVWATLGFLLMGIGLLSLLVAENNRKRTGRPNVNVVHV-DEPMMA---PPXXXXXXXXXEPEPLVRREPPMGTSPPVPSYDRQAWQQLVESDADLAAVASVLADYGHQYVDELAREYLAVADKTRLPAIVDGIVGRAGARVA-PRGNPEPSEVKPVSNVRRSNLMAPRPDRQPMPL-PPAKQKISETLPDPALQPVAPVTQETASAPVPSPMAVEPVLDAGDLNKTIVSADDELTAMLGRLSGDAAT 777
R+AGW+LL+ G +LC T+ WA LGFLLMGIGL+SL VAE R+++ + + +P +A P PE +S +YD++ W++LVESD DLA +A+VL+DYG YVDE A YLA DK RL AIV+ I+ +A + + P +PE + V RS PDR P + P + PD A + SAP + +EP + G N +I SADD+L+ ++ + DA++
Sbjct: 42 RIAGWVLLLTGFVLCLTVAWAALGFLLMGIGLVSLQVAERKRRKSEKTESAALDARPKPAIALAEVPPANAETVPITPEXXXXXXXQTTSSADASAYDKEVWRRLVESDPDLARLAAVLSDYGQHYVDEFANSYLAQPDKGRLGAIVNEIIAKAARKESTPAASPEVHQPS-VDQEPRSPHARTEPDRSPPKIHAPKVAVVPRAAPDVRSTRAAAIAPRIRSAPE---IRLEPNPEDG--NDSITSADDDLSELIRTFANDASS 299
BLAST of mRNA_P-wetherbeei_contig19520.1.1 vs. uniprot
Match: UPI000417655F (hypothetical protein n=1 Tax=Bradyrhizobium sp. Ai1a-2 TaxID=196490 RepID=UPI000417655F) HSP 1 Score: 130 bits (326), Expect = 6.780e-33 Identity = 100/268 (37.31%), Postives = 137/268 (51.12%), Query Frame = 1
Query: 4 RVAGWILLIAGALLCATLVWATLGFLLMGIGLLSLLVAENNRKRT-------GRPNVNVVHVDEPMMAPPXXXXXXXXXEPEPLVRREPPMGTSPPVPSYDRQAWQQLVESDADLAAVASVLADYGHQYVDELAREYLAVADKTRLPAIVDGIVGRAGARVAPRGNPEPSEVKPVS----NVRRSNLMAPRPDRQPMPLPPAKQKISETLPDPALQPVAPVTQETASAPVPSPMAVEPVLDAGDLNKTIVSADDELTAMLGRLSGDAA 774
R+AGW+LL+AG +LC ++ WA LGFLLMGIGL+SL V E R++ RP V + P EP PL + MG +YD++ W++L+ESD DLA +A VL+DYG +VDE A YLA DK+RL AIV+ IV +A AR +P EV+ S + S L PDR+P + K + A Q SAP P EP D G N + SA+D+L+ ++ + DA+
Sbjct: 2 RIAGWVLLVAGFVLCLSVAWAALGFLLMGIGLVSLQVGERKRRKAEGVAGLDARPRPAVALAETPAA---HAENAAFTPEPPPLTAPQAAMGAD--ASAYDKETWRRLIESDPDLARLAEVLSDYGQHHVDEFASSYLAKPDKSRLAAIVNEIVAKA-ARKESAPAAQPPEVRQPSIDANHEPGSPLARIEPDRRPPRIHAPKVAVVPPATPDVRTGAAAAAQRVQSAPEARP---EPNPDNG--NDSTTSAEDDLSELIRSFANDAS 258 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19520.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19520.1.1 >prot_P-wetherbeei_contig19520.1.1 ID=prot_P-wetherbeei_contig19520.1.1|Name=mRNA_P-wetherbeei_contig19520.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=265bp VRVAGWILLIAGALLCATLVWATLGFLLMGIGLLSLLVAENNRKRTGRPNback to top mRNA from alignment at P-wetherbeei_contig19520:210..1004- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19520.1.1 ID=mRNA_P-wetherbeei_contig19520.1.1|Name=mRNA_P-wetherbeei_contig19520.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig19520:210..1004- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19520:210..1004- >mRNA_P-wetherbeei_contig19520.1.1 ID=mRNA_P-wetherbeei_contig19520.1.1|Name=mRNA_P-wetherbeei_contig19520.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig19520:210..1004- (Phaeothamnion wetherbeei SAG_119_79)back to top |