mRNA_P-wetherbeei_contig1949.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1949.2.1
Unique NamemRNA_P-wetherbeei_contig1949.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1949.2.1 vs. uniprot
Match: D7FN54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN54_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.150e-8
Identity = 28/61 (45.90%), Postives = 45/61 (73.77%), Query Frame = 3 
Query:  843 IKKTPGVQNAARRILEWLQQGPLTLMDISQRLTKLSRVKVQMVLDVMCATSIIQLVRRHPP 1025
            +KK  GVQNA R+ LEWLQ G ++L+++ Q L KLS+ +V++V++ + A  ++ LVR+H P
Sbjct:  106 VKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAP 166
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BLAST of mRNA_P-wetherbeei_contig1949.2.1 vs. uniprot
Match: A0A6H5KJM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.090e-8
Identity = 28/61 (45.90%), Postives = 45/61 (73.77%), Query Frame = 3 
Query:  843 IKKTPGVQNAARRILEWLQQGPLTLMDISQRLTKLSRVKVQMVLDVMCATSIIQLVRRHPP 1025
            +KK  GVQNA R+ LEWLQ G ++L+++ Q L KLS+ +V++V++ + A  ++ LVR+H P
Sbjct:  105 VKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAP 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1949.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN54_ECTSI2.150e-845.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJM1_9PHAE7.090e-845.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1949contigP-wetherbeei_contig1949:1348..3269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1922
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_008440.1
Cds size1347
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.9964669-UTR-P-wetherbeei_contig1949:1347..15291683186173.9964669-UTR-P-wetherbeei_contig1949:1347..1529Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1949 1348..1529 +
1683186174.0128157-UTR-P-wetherbeei_contig1949:2876..32691683186174.0128157-UTR-P-wetherbeei_contig1949:2876..3269Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1949 2877..3269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186174.0049639-CDS-P-wetherbeei_contig1949:1529..28761683186174.0049639-CDS-P-wetherbeei_contig1949:1529..2876Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1949 1530..2876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1949.2.1prot_P-wetherbeei_contig1949.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1949 1530..2876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1949.2.1

>prot_P-wetherbeei_contig1949.2.1 ID=prot_P-wetherbeei_contig1949.2.1|Name=mRNA_P-wetherbeei_contig1949.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=449bp
MDYHHQEADEEYQPFEESCDSANFAWRNIHPSRLPVDPAPSPSLEPMAPP
QQQPLLRPIPPYAAMALPAAASVAEEAEPGKRKRRKTAFADYQVFVDSQG
DQVLNILIQDHNRPSVGRQPALGREDRRPRRPSSGRVRYDREVFEGEEGD
DVFYAAGGGAAAGTAIDSAGQVNFYGSASGALATASDARGKGSSARTASV
IGAAATARACGGQEELPFEVIKKTPGVQNAARRILEWLQQGPLTLMDISQ
RLTKLSRVKVQMVLDVMCATSIIQLVRRHPPGDIAAAAAPPAATAASPAA
AVAGTVHPASADAAANHAGASDSVPAAAAAAAPAAAAAAAVAAPIVNVND
PEEFYYRFAAGPVPPRKGAAPAPLHGMLQAVAAREQEAAALRARLEPLQE
ALRENQAEGAPPGSPAQVAELVRQFLRSDHALEQDTFYAAVRAAAGVR*
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mRNA from alignment at P-wetherbeei_contig1949:1348..3269+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1949.2.1 ID=mRNA_P-wetherbeei_contig1949.2.1|Name=mRNA_P-wetherbeei_contig1949.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1922bp|location=Sequence derived from alignment at P-wetherbeei_contig1949:1348..3269+ (Phaeothamnion wetherbeei SAG_119_79)
TGTTGCGAAAGCAAACGAGATTGGCGCTTTCGATCTCTCTATCTTCTCTC
TCTTTCTCTTCTCCCTCTGTCTCTTTTGTCTTCGGTTTTTTGTCCTCTTT
ACTCCAGGAGCTGTTCCGGAGTCGCATCAACGGGAAGGCGGAAGGGCAAA
GAAGACACGCAGACCAGCTAGGAAAGTGAGCAATGGATTACCATCATCAA
GAGGCCGACGAGGAATACCAGCCGTTCGAGGAATCATGCGACTCTGCTAA
TTTTGCGTGGAGAAACATCCATCCCTCGCGCCTCCCCGTGGATCCGGCCC
CATCACCGTCCCTGGAGCCCATGGCGCCGCCCCAACAGCAGCCTTTACTG
CGGCCGATTCCACCCTACGCGGCGATGGCCCTCCCTGCAGCAGCCAGTGT
GGCCGAGGAGGCGGAGCCTGGAAAGCGAAAGCGACGAAAGACGGCGTTCG
CAGACTATCAGGTTTTTGTGGACTCACAGGGGGACCAAGTGCTCAACATC
TTGATCCAGGATCACAACCGGCCGTCGGTCGGAAGGCAGCCGGCGCTGGG
GCGCGAAGACCGGCGGCCGCGGAGGCCTTCAAGTGGCAGGGTGCGTTACG
ACCGCGAGGTTTTTGAAGGGGAGGAAGGTGATGACGTCTTTTACGCGGCG
GGTGGCGGAGCCGCGGCAGGAACCGCCATCGACTCCGCCGGACAAGTTAA
TTTCTATGGTTCTGCTTCAGGTGCTCTTGCGACAGCTTCCGATGCCCGCG
GCAAGGGCAGCAGCGCCCGCACTGCATCGGTCATAGGCGCCGCCGCCACC
GCGAGGGCCTGCGGCGGCCAAGAAGAGCTCCCCTTCGAAGTAATCAAGAA
GACGCCCGGCGTCCAAAACGCTGCTCGTCGCATCCTCGAGTGGTTGCAGC
AGGGGCCGCTGACGCTGATGGATATCTCGCAGCGGCTCACCAAGCTGTCC
CGCGTCAAGGTCCAGATGGTGCTCGACGTCATGTGCGCCACCTCCATCAT
CCAGCTTGTGCGGCGCCATCCGCCTGGAGATATCGCCGCCGCCGCTGCAC
CACCAGCGGCCACCGCCGCTTCGCCGGCCGCCGCCGTCGCCGGCACGGTC
CATCCTGCTTCCGCGGACGCGGCTGCCAACCACGCCGGAGCATCTGATTC
CGTGCCCGCTGCAGCCGCCGCTGCTGCTCCCGCCGCCGCTGCCGCTGCCG
CCGTCGCCGCTCCGATCGTCAACGTTAACGACCCGGAAGAGTTCTACTAC
CGCTTCGCAGCCGGCCCCGTGCCGCCGCGCAAGGGTGCGGCACCGGCGCC
GCTCCATGGAATGCTGCAGGCGGTGGCTGCGCGAGAGCAGGAGGCGGCGG
CGCTCCGGGCGCGGCTGGAGCCGCTACAGGAGGCGCTGCGCGAGAACCAG
GCGGAGGGCGCACCACCGGGCAGCCCCGCGCAGGTCGCCGAGCTGGTGCG
GCAGTTCCTGCGGAGCGACCATGCACTGGAACAAGACACGTTTTACGCTG
CCGTGCGCGCCGCCGCGGGCGTCCGGTGACGCGCTGTGGGCGGGCTGGCG
GCGGGGGTGTGCCGGGCAGAAACGGCAGGCTAGCTGGCCGCGGGGAGCGG
TGGCATGTTGGTGAGGCGGCGATGCGGCGGCGGCGCCAATGGCCAGCTGG
CGAGGCAACGGCGGCAAGCTGGGACGCTGGGGAGGCAGCACGGCACTTTG
GCATTCGCGACCTTCCGGCCAGAGATGCTGGCTGCTTGCGCGGCTGCTCT
CGTCTGCTTCTGTGCCGCATTTGTCTTGTTAGATATCGGTAGGTTTAGAA
ACGTGGAGGCTTCTCATTTTGGAAACAGGAAACTTGGCACAAAAACCGCA
ACTGTATGCACAGAAACAATCATGGCGTAATGGGAAGGCGCAATCTGTAA
AAATCAAACCATTCTCAAACTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1949:1348..3269+

>mRNA_P-wetherbeei_contig1949.2.1 ID=mRNA_P-wetherbeei_contig1949.2.1|Name=mRNA_P-wetherbeei_contig1949.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1347bp|location=Sequence derived from alignment at P-wetherbeei_contig1949:1348..3269+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATTACCATCATCAAGAGGCCGACGAGGAATACCAGCCGTTCGAGGA
ATCATGCGACTCTGCTAATTTTGCGTGGAGAAACATCCATCCCTCGCGCC
TCCCCGTGGATCCGGCCCCATCACCGTCCCTGGAGCCCATGGCGCCGCCC
CAACAGCAGCCTTTACTGCGGCCGATTCCACCCTACGCGGCGATGGCCCT
CCCTGCAGCAGCCAGTGTGGCCGAGGAGGCGGAGCCTGGAAAGCGAAAGC
GACGAAAGACGGCGTTCGCAGACTATCAGGTTTTTGTGGACTCACAGGGG
GACCAAGTGCTCAACATCTTGATCCAGGATCACAACCGGCCGTCGGTCGG
AAGGCAGCCGGCGCTGGGGCGCGAAGACCGGCGGCCGCGGAGGCCTTCAA
GTGGCAGGGTGCGTTACGACCGCGAGGTTTTTGAAGGGGAGGAAGGTGAT
GACGTCTTTTACGCGGCGGGTGGCGGAGCCGCGGCAGGAACCGCCATCGA
CTCCGCCGGACAAGTTAATTTCTATGGTTCTGCTTCAGGTGCTCTTGCGA
CAGCTTCCGATGCCCGCGGCAAGGGCAGCAGCGCCCGCACTGCATCGGTC
ATAGGCGCCGCCGCCACCGCGAGGGCCTGCGGCGGCCAAGAAGAGCTCCC
CTTCGAAGTAATCAAGAAGACGCCCGGCGTCCAAAACGCTGCTCGTCGCA
TCCTCGAGTGGTTGCAGCAGGGGCCGCTGACGCTGATGGATATCTCGCAG
CGGCTCACCAAGCTGTCCCGCGTCAAGGTCCAGATGGTGCTCGACGTCAT
GTGCGCCACCTCCATCATCCAGCTTGTGCGGCGCCATCCGCCTGGAGATA
TCGCCGCCGCCGCTGCACCACCAGCGGCCACCGCCGCTTCGCCGGCCGCC
GCCGTCGCCGGCACGGTCCATCCTGCTTCCGCGGACGCGGCTGCCAACCA
CGCCGGAGCATCTGATTCCGTGCCCGCTGCAGCCGCCGCTGCTGCTCCCG
CCGCCGCTGCCGCTGCCGCCGTCGCCGCTCCGATCGTCAACGTTAACGAC
CCGGAAGAGTTCTACTACCGCTTCGCAGCCGGCCCCGTGCCGCCGCGCAA
GGGTGCGGCACCGGCGCCGCTCCATGGAATGCTGCAGGCGGTGGCTGCGC
GAGAGCAGGAGGCGGCGGCGCTCCGGGCGCGGCTGGAGCCGCTACAGGAG
GCGCTGCGCGAGAACCAGGCGGAGGGCGCACCACCGGGCAGCCCCGCGCA
GGTCGCCGAGCTGGTGCGGCAGTTCCTGCGGAGCGACCATGCACTGGAAC
AAGACACGTTTTACGCTGCCGTGCGCGCCGCCGCGGGCGTCCGGTGA
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