mRNA_P-wetherbeei_contig19465.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19465.1.1
Unique NamemRNA_P-wetherbeei_contig19465.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19465.1.1 vs. uniprot
Match: A0A7Z9PWC6_9BACT (CAP domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PWC6_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 3.210e-19
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 1
Query:   16 QIMEDTNRERRQLGLAPLVWDDHLASAATSHSDEMIQLNYFEHSSPKKGYENAMERVERTGAQPNAVGECIFEAEGYPARQLPDTCVKSWVDSPSHHAIMMDGRYKAGGVGVSKQGELYRVTMVF 390
            +++  TN  RR+ GL  +     L  AA  HS EM++L YF H+SP KG     +RV   GA P  V E IF+  G+         V+ W+DSP H   ++D +    G+G +K+G +  VT VF
Sbjct:   90 EVLRLTNENRRRRGLEDVAVHGSLQQAAEGHSQEMLKLGYFSHTSPVKGRSQPGDRVRLAGADPLMVSENIFQCTGHDPTGAAKLTVQEWMDSPGHRQNILDPQATHVGIGYAKEGRIIVVTQVF 214          
BLAST of mRNA_P-wetherbeei_contig19465.1.1 vs. uniprot
Match: A0A7X2DB83_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7X2DB83_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 7.630e-15
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 1
Query:   13 KQIMEDTNRERRQLGLAPLVWDDHLASAATSHSDEMIQLNYFEHSSPKKG---YENAMERVERTGAQPNAVGECIFEAEGYPARQLPDTCVKSWVDSPSHHAIMMDGRYKAGGVGVSKQG 363
            +Q+    N +R + G  PL W++ LASAA  HS EMI  +YF+H S  K    YENA ER+ R   +P+     I E  G    Q+ +  ++ W+DSP HHA M++  +   G+G+   G
Sbjct:   58 EQLFNMINEQRAKEGADPLHWNNQLASAARFHSQEMIDNDYFDHDSKDKNGVSYENAFERIARFNYEPDVPPGAIGENIG--GTQILEHMMQLWLDSPGHHANMVNTMFTEIGIGIRVGG 175          
BLAST of mRNA_P-wetherbeei_contig19465.1.1 vs. uniprot
Match: A0A7V7X649_9BACT (CAP domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V7X649_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 2.150e-12
Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 1
Query:   13 KQIMEDTNRERRQLGLAPLVWDDHLASAATSHSDEMIQLNYFEHSSPKKGYENAMERVERTGAQPNAVGECI-FEAEGYPARQLPDTCVKSWVDSPSHHAIMMDGRYKAGGVGV 351
            K I++  N ER++ GL  L +D  L SAA  HS EM++LNYF H+SP    +N  +RV RTG     VGE I   +      ++    ++ W+ SP H A ++   +   G GV
Sbjct:   44 KTILKLVNAERQKAGLNELSYDVSLQSAARQHSQEMLRLNYFSHTSPTVELKNPSDRVYRTGLSDYVVGENIAVHSLDVAPEEVASQLMEQWMKSPGHRANILRPEFTHIGAGV 157          
BLAST of mRNA_P-wetherbeei_contig19465.1.1 vs. uniprot
Match: A0A1H3PUA8_9BACL (Uncharacterized protein, YkwD family n=1 Tax=Thermoactinomyces sp. DSM 45892 TaxID=1882753 RepID=A0A1H3PUA8_9BACL)

HSP 1 Score: 71.2 bits (173), Expect = 2.940e-12
Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 1
Query:    7 VAKQIMEDTNRERRQLGLAPLVWDDHLASAATSHSDEMIQLNYFEHSSPKKGYENAMERVERTGAQPNAVGECIFEAEGYPARQLPDTCVKSWVDSPSHHAIMMDGRYKAGGVGVSKQG 363
            V  +++   N ER++ GL PLV D  L+S A + S +MI L YF+H SP+ G  +  + + + G +  A GE I  A G+P    P   +KSW++SP H A ++   +   GVG +K G
Sbjct:  129 VENEVVRLVNIERQKAGLQPLVADTKLSSVARTKSQDMIDLRYFDHQSPRYG--SPFDMMRQFGIRYQAAGENI--ACGHPT---PAEVMKSWMNSPGHRANILSRDFTKIGVGSAKGG 240          
BLAST of mRNA_P-wetherbeei_contig19465.1.1 vs. uniprot
Match: A0A174V1L2_9CLOT (SCP domain-containing protein n=5 Tax=Clostridium paraputrificum TaxID=29363 RepID=A0A174V1L2_9CLOT)

HSP 1 Score: 69.7 bits (169), Expect = 1.260e-11
Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = 1
Query:    7 VAKQIMEDTNRERRQLGLAPLVWDDHLASAATSHSDEMIQLNYFEHSSPKKGYENAMERVERTGAQPNAVGECIFEAEGYPARQLPDTCV-KSWVDSPSHHAIMMDGRYKAGGVGVS-KQGELYRVTMVFAT 396
            V  +I   TN ER++ GL  L  +    S A S S EM+ LNYF+H SPK GY    +  +R G   + +GE I+   G  A  +    +  SW++S  H   +++  Y   G+GV+ + G+LY  T +F T
Sbjct:  133 VEDEIFNATNAERQKQGLPALKRNSTANSYARSKSLEMLDLNYFDHKSPKNGY--IQDIAKRDGWNYSRIGENIYTMTGGQASSISGASITNSWMNSEGHRKNILNSGYTDIGIGVTFRNGKLY-ATQIFYT 261          
BLAST of mRNA_P-wetherbeei_contig19465.1.1 vs. uniprot
Match: A0A6N3BA08_9CLOT (Cysteine-rich secretory protein family protein n=1 Tax=Clostridium paraputrificum TaxID=29363 RepID=A0A6N3BA08_9CLOT)

HSP 1 Score: 69.7 bits (169), Expect = 1.290e-11
Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = 1
Query:    7 VAKQIMEDTNRERRQLGLAPLVWDDHLASAATSHSDEMIQLNYFEHSSPKKGYENAMERVERTGAQPNAVGECIFEAEGYPARQLPDTCV-KSWVDSPSHHAIMMDGRYKAGGVGVS-KQGELYRVTMVFAT 396
            V  +I   TN ER++ GL  L  +      A S S EM+ LNYF+H+SPK GY    +  +R G + + +GE I+   G  A  +    +  SW++S  H   +++  Y   G+GV+ + G+LY  T +F T
Sbjct:  135 VEDEIFNSTNAERQKQGLPALKRNSTANKYARSKSLEMLNLNYFDHNSPKNGY--IQDIAKRDGWKYSRIGENIYTMTGGQASNISGASITNSWMNSEGHRKNILNSGYTDIGIGVTFRNGKLY-ATQIFYT 263          
BLAST of mRNA_P-wetherbeei_contig19465.1.1 vs. uniprot
Match: A0A7X7B7P7_9FIRM (SCP domain-containing protein n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A7X7B7P7_9FIRM)

HSP 1 Score: 67.4 bits (163), Expect = 1.390e-11
Identity = 43/131 (32.82%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   13 KQIMEDTNRERRQLGLAPLVWDDHLASAATSHSDEMIQLNYFEHSSPKKGYENAMERVERTGAQPNAVGECIF--EAEGYPARQLPDTCVKSWVDSPSHHAIMMDGRYKAGGVGVSKQGELYRVTMVFATF 399
            +QI +  N  R Q GL+PL W++  A+ A SHS +M+  N+F H+SP  G     +R+++ G      GE I   +++   A +       SW++SP H   +++  +K  GVGV+  G+ Y  T  F T+
Sbjct:   28 RQIFDLANSARVQRGLSPLEWNEEAAAVARSHSKDMLDNNFFSHTSPNTG--TMGDRLQKAGVNYRTAGENIAYGQSDSINAHE-------SWMNSPGHRQNILNKDFKTLGVGVA--GKYY--TQNFVTY 145          
BLAST of mRNA_P-wetherbeei_contig19465.1.1 vs. uniprot
Match: UPI001EF31D7D (CAP domain-containing protein n=1 Tax=Bacillus sp. B15-48 TaxID=1548601 RepID=UPI001EF31D7D)

HSP 1 Score: 69.7 bits (169), Expect = 2.430e-11
Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 1
Query:    7 VAKQIMEDTNRERRQLGLAPLVWDDHLASAATSHSDEMIQLNYFEHSSPKKGYENAMERVERTGAQPNAVGECIFEAEGYPARQLPDTCVKSWVDSPSHHAIMMDGRYKAGGVGVSKQG 363
            +A+Q+++ TN +R+Q GL+PL  D  L   A   S++M Q  YF H+SP  G  +  + +   G   N  GE I + +     + P   VK+W+DSP H   ++   +   GVG ++ G
Sbjct:  242 IAQQVIDLTNEQRKQNGLSPLQADTQLNGVAQKKSEDMQQNGYFSHTSPTYG--SPFDMMRDMGVSYNTAGENIAQGQ-----RTPQEVVKAWMDSPGHRKNILSPDFTHIGVGYTETG 353          
BLAST of mRNA_P-wetherbeei_contig19465.1.1 vs. uniprot
Match: A0A1C6B5L0_9CLOT (Uncharacterized protein, YkwD family n=4 Tax=Clostridia TaxID=186801 RepID=A0A1C6B5L0_9CLOT)

HSP 1 Score: 68.6 bits (166), Expect = 4.050e-11
Identity = 39/126 (30.95%), Postives = 67/126 (53.17%), Query Frame = 1
Query:   13 KQIMEDTNRERRQLGLAPLVWDDHLASAATSHSDEMIQLNYFEHSSPKKGYENAMERVERTGAQPNAVGECIFEAEGYPARQLPDTCVKSWVDSPSHHAIMMDGRYKAGGVGVSKQGELYRVTMVF 390
            K+I++  N ER   GL PL +++ L++ AT  S +MI  NYF+H+SP  G  +  + +++ G    A GE I   +     + P   + SW++SP H   +++  +   GVG++  G     T +F
Sbjct:  163 KEILDLVNVERTNRGLQPLKFNNELSNVATKKSQDMIDRNYFDHTSPTYG--SPFDMMKQFGISYRAAGENIAMGQ-----KTPKEVMNSWMNSPGHRKNILNPDFTELGVGIASNGSSIYWTQMF 281          
BLAST of mRNA_P-wetherbeei_contig19465.1.1 vs. uniprot
Match: R4KBM3_CLOPA (Uncharacterized protein, YkwD family n=1 Tax=Clostridium pasteurianum BC1 TaxID=86416 RepID=R4KBM3_CLOPA)

HSP 1 Score: 67.0 bits (162), Expect = 9.040e-11
Identity = 42/127 (33.07%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   10 AKQIMEDTNRERRQLGLAPLVWDDHLASAATSHSDEMIQLNYFEHSSPKKGYENAMERVERTGAQPNAVGECIFEAEGYPARQLPDTCVKSWVDSPSHHAIMMDGRYKAGGVGVSKQ--GELYRVTM 384
            A +++   N ER + GLAPL  +  L+  AT+ + +MI  NYF H+SP  G  +  + +++ G    A GE I   +     + P   + SW++SP H A +++  +   GVGV+K   G  Y V M
Sbjct:  110 ANEVIRLVNVERSKNGLAPLKANAELSKVATTKAQDMIDKNYFSHTSPTYG--SPFDMMKKFGINYTAAGENIAYGQ-----KTPSDVMNSWMNSPGHRANILNSNFAEIGVGVAKDKNGTPYWVQM 229          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19465.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9PWC6_9BACT3.210e-1936.80CAP domain-containing protein n=1 Tax=Phycisphaera... [more]
A0A7X2DB83_9BACT7.630e-1537.50T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7V7X649_9BACT2.150e-1236.84CAP domain-containing protein n=1 Tax=bacterium Ta... [more]
A0A1H3PUA8_9BACL2.940e-1236.97Uncharacterized protein, YkwD family n=1 Tax=Therm... [more]
A0A174V1L2_9CLOT1.260e-1134.85SCP domain-containing protein n=5 Tax=Clostridium ... [more]
A0A6N3BA08_9CLOT1.290e-1134.09Cysteine-rich secretory protein family protein n=1... [more]
A0A7X7B7P7_9FIRM1.390e-1132.82SCP domain-containing protein n=1 Tax=Clostridia b... [more]
UPI001EF31D7D2.430e-1132.77CAP domain-containing protein n=1 Tax=Bacillus sp.... [more]
A0A1C6B5L0_9CLOT4.050e-1130.95Uncharacterized protein, YkwD family n=4 Tax=Clost... [more]
R4KBM3_CLOPA9.040e-1133.07Uncharacterized protein, YkwD family n=1 Tax=Clost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19465contigP-wetherbeei_contig19465:869..1273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog526227.Mesil_1463
PFAMsCAP
Model size405
Max annot lvl1297|Deinococcus-Thermus
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.81e-15
EggNOG OGsCOG2340@1|root,COG2340@2|Bacteria,1WK37@1297|Deinococcus-Thermus
Descriptionprotein with SCP PR1 domains
Cds size384
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.1446767-UTR-P-wetherbeei_contig19465:868..8891683186173.1446767-UTR-P-wetherbeei_contig19465:868..889Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19465 869..889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.157121-CDS-P-wetherbeei_contig19465:889..12731683186173.157121-CDS-P-wetherbeei_contig19465:889..1273Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19465 890..1273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19465.1.1prot_P-wetherbeei_contig19465.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19465 890..1273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19465.1.1

>prot_P-wetherbeei_contig19465.1.1 ID=prot_P-wetherbeei_contig19465.1.1|Name=mRNA_P-wetherbeei_contig19465.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
MEDTNRERRQLGLAPLVWDDHLASAATSHSDEMIQLNYFEHSSPKKGYEN
AMERVERTGAQPNAVGECIFEAEGYPARQLPDTCVKSWVDSPSHHAIMMD
GRYKAGGVGVSKQGELYRVTMVFATFE*
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mRNA from alignment at P-wetherbeei_contig19465:869..1273+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19465.1.1 ID=mRNA_P-wetherbeei_contig19465.1.1|Name=mRNA_P-wetherbeei_contig19465.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig19465:869..1273+ (Phaeothamnion wetherbeei SAG_119_79)
ATAGATGTTGCCAAGCAAATTATGGAGGATACGAATCGCGAGCGCCGCCA GCTTGGTCTGGCTCCGCTGGTGTGGGATGACCACCTCGCCAGTGCTGCAA CCAGTCACTCCGACGAGATGATTCAGCTCAATTACTTCGAGCATAGCTCT CCCAAAAAGGGCTACGAGAACGCGATGGAGCGAGTCGAGCGGACGGGCGC ACAGCCGAATGCGGTGGGCGAATGCATCTTCGAGGCGGAGGGATATCCCG CTCGCCAGTTGCCTGACACCTGCGTTAAATCCTGGGTGGACAGCCCTTCT CACCACGCCATTATGATGGACGGCCGTTATAAAGCGGGCGGTGTAGGGGT CAGCAAACAGGGCGAACTTTACCGGGTCACGATGGTTTTCGCCACTTTCG AATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19465:869..1273+

>mRNA_P-wetherbeei_contig19465.1.1 ID=mRNA_P-wetherbeei_contig19465.1.1|Name=mRNA_P-wetherbeei_contig19465.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig19465:869..1273+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGATACGAATCGCGAGCGCCGCCAGCTTGGTCTGGCTCCGCTGGT
GTGGGATGACCACCTCGCCAGTGCTGCAACCAGTCACTCCGACGAGATGA
TTCAGCTCAATTACTTCGAGCATAGCTCTCCCAAAAAGGGCTACGAGAAC
GCGATGGAGCGAGTCGAGCGGACGGGCGCACAGCCGAATGCGGTGGGCGA
ATGCATCTTCGAGGCGGAGGGATATCCCGCTCGCCAGTTGCCTGACACCT
GCGTTAAATCCTGGGTGGACAGCCCTTCTCACCACGCCATTATGATGGAC
GGCCGTTATAAAGCGGGCGGTGTAGGGGTCAGCAAACAGGGCGAACTTTA
CCGGGTCACGATGGTTTTCGCCACTTTCGAATAG
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