mRNA_P-wetherbeei_contig1946.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1946.4.1
Unique NamemRNA_P-wetherbeei_contig1946.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1946.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1946contigP-wetherbeei_contig1946:3341..4190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size495
Hectar predicted targeting categoryother localisation
Exons3
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186172.8343163-CDS-P-wetherbeei_contig1946:3340..34571683186172.8343163-CDS-P-wetherbeei_contig1946:3340..3457Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1946 3341..3457 -
1683186172.8423417-CDS-P-wetherbeei_contig1946:3634..39221683186172.8423417-CDS-P-wetherbeei_contig1946:3634..3922Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1946 3635..3922 -
1683186172.8500779-CDS-P-wetherbeei_contig1946:4100..41901683186172.8500779-CDS-P-wetherbeei_contig1946:4100..4190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1946 4101..4190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1946.4.1prot_P-wetherbeei_contig1946.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1946 3341..4190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1946.4.1

>prot_P-wetherbeei_contig1946.4.1 ID=prot_P-wetherbeei_contig1946.4.1|Name=mRNA_P-wetherbeei_contig1946.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MTRERQKRSRNVKRSEHDRQRRTLEHLKTQALESHGYYEVHELLQDVTAT
RLENKLLRMRLGEGLESEEARDWASMKRAEHASKAAAAQLVNALLGKDII
GEHQQMVEANERLRSRIAQLELMNLTLQRERDAARRASLRSRKELLAKVK
EIKAQTGGASCVIQ*
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mRNA from alignment at P-wetherbeei_contig1946:3341..4190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1946.4.1 ID=mRNA_P-wetherbeei_contig1946.4.1|Name=mRNA_P-wetherbeei_contig1946.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=850bp|location=Sequence derived from alignment at P-wetherbeei_contig1946:3341..4190- (Phaeothamnion wetherbeei SAG_119_79)
ATGACACGAGAACGCCAGAAACGAAGTCGTAACGTGAAAAGGAGCGAGCA
TGATCGCCAACGCAGAACATTAGAGCATCTAAAAACGCAGGTGTTGTTTT
TCAGATGTACAAATCTCTGCGTTATCCTTGCATGTCTTATCACTTCCTCT
ACTTTAAACCATTTTCGCTGTCAATGCCTATATCCTTGTCACGTGCCGAC
CCAAGCGACGCGGGCCTTTCTCATTATGGCAAAGTAGGAATGGGGTTCGG
AAAATCTCCTTGCAACAGGCTCTGGAGAGTCACGGATACTATGAAGTGCA
TGAGCTTCTGCAAGACGTCACAGCAACGCGGCTCGAGAACAAGCTATTGA
GGATGCGGCTAGGCGAAGGACTAGAAAGCGAGGAAGCCAGGGACTGGGCC
AGCATGAAAAGGGCCGAGCACGCCAGCAAGGCGGCAGCGGCGCAGTTGGT
CAACGCTCTTCTGGGGAAAGACATAATCGGCGAGCACCAGCAGATGGTGG
AGGCCAACGAGCGCTTGAGAAGCCGCATCGCGCAGCTGGAGTTAATGAAT
TTGACGGTAAAGCTCGTTGCGACTTTTCTTCCCCTTTGCTTGTCTTTTCT
TCCCCAAGCGTCATCATGCATTGCCGGCTCATCTCTGGTGCGTGCGTTTG
CGCGCAACCCTCTCCCATCACTTCCCCCCGCCCTGCCGGAAACGAACGGC
CGGTTCTTCGTGCGCACTTCATTTTTTCGGCAGCTTCAGCGCGAGCGGGA
CGCGGCAAGGCGGGCATCGCTGCGGAGCCGAAAGGAGCTGCTGGCAAAGG
TGAAGGAAATCAAGGCGCAGACCGGCGGTGCGTCATGCGTGATCCAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1946:3341..4190-

>mRNA_P-wetherbeei_contig1946.4.1 ID=mRNA_P-wetherbeei_contig1946.4.1|Name=mRNA_P-wetherbeei_contig1946.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig1946:3341..4190- (Phaeothamnion wetherbeei SAG_119_79)
ATGACACGAGAACGCCAGAAACGAAGTCGTAACGTGAAAAGGAGCGAGCA
TGATCGCCAACGCAGAACATTAGAGCATCTAAAAACGCAGGCTCTGGAGA
GTCACGGATACTATGAAGTGCATGAGCTTCTGCAAGACGTCACAGCAACG
CGGCTCGAGAACAAGCTATTGAGGATGCGGCTAGGCGAAGGACTAGAAAG
CGAGGAAGCCAGGGACTGGGCCAGCATGAAAAGGGCCGAGCACGCCAGCA
AGGCGGCAGCGGCGCAGTTGGTCAACGCTCTTCTGGGGAAAGACATAATC
GGCGAGCACCAGCAGATGGTGGAGGCCAACGAGCGCTTGAGAAGCCGCAT
CGCGCAGCTGGAGTTAATGAATTTGACGCTTCAGCGCGAGCGGGACGCGG
CAAGGCGGGCATCGCTGCGGAGCCGAAAGGAGCTGCTGGCAAAGGTGAAG
GAAATCAAGGCGCAGACCGGCGGTGCGTCATGCGTGATCCAATAA
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