mRNA_P-wetherbeei_contig19347.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19347.1.1
Unique NamemRNA_P-wetherbeei_contig19347.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19347.1.1 vs. uniprot
Match: A0A6L5DAF9_9INSE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5DAF9_9INSE)

HSP 1 Score: 79.7 bits (195), Expect = 9.220e-16
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   16 KKPTNPLLWWKEHEMEFPNLAKLAKRVLCIPATSAPLKRLFSVAGQTEMQDRNRLSLDSVELLIYL 213
            K   NPL WWK +E+++P ++KLAKR LCIPATSAP +R+FS AG      RN L+ ++VE+LI++
Sbjct:  558 KASRNPLFWWKNYEVKYPTISKLAKRYLCIPATSAPSERVFSTAGNIITAKRNCLAPENVEMLIFI 623          
BLAST of mRNA_P-wetherbeei_contig19347.1.1 vs. uniprot
Match: A0A1A8B204_NOTFU (6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 1 n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8B204_NOTFU)

HSP 1 Score: 75.1 bits (183), Expect = 1.030e-15
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 LGTDKKPTNPLLWWKEHEMEFPNLAKLAKRVLCIPATSAPLKRLFSVAGQTEMQDRNRLSLDSVELLIYL 213
            +G D    +P  WWK +E +FP++AK+AKR+LC+P TS P +R+FS AG     +R+RL+ DSV+ LI+L
Sbjct:   53 IGVD---ADPFRWWKTNEHKFPHVAKVAKRLLCVPGTSVPSERIFSTAGDIVSANRSRLAPDSVDRLIFL 119          
BLAST of mRNA_P-wetherbeei_contig19347.1.1 vs. uniprot
Match: A0A1X7V8F4_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V8F4_AMPQE)

HSP 1 Score: 75.1 bits (183), Expect = 1.220e-15
Identity = 33/62 (53.23%), Postives = 50/62 (80.65%), Query Frame = 1
Query:   28 NPLLWWKEHEMEFPNLAKLAKRVLCIPATSAPLKRLFSVAGQTEMQDRNRLSLDSVELLIYL 213
            NPL+WWK++++ FPNLAK+A+ +L IPATSAP++R+ S AG T    R+ L+ D+V++LI+L
Sbjct:   57 NPLVWWKDNQLHFPNLAKVARLLLSIPATSAPVERIVSAAGLTVPNLRSSLNPDTVDVLIFL 118          
BLAST of mRNA_P-wetherbeei_contig19347.1.1 vs. uniprot
Match: A0A1X7SSL9_AMPQE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SSL9_AMPQE)

HSP 1 Score: 77.8 bits (190), Expect = 4.270e-15
Identity = 34/65 (52.31%), Postives = 51/65 (78.46%), Query Frame = 1
Query:   19 KPTNPLLWWKEHEMEFPNLAKLAKRVLCIPATSAPLKRLFSVAGQTEMQDRNRLSLDSVELLIYL 213
            +  NPL+WWK++++ FPNLAK+A+ +L IPATSAP +R+FS AG T  + R+ L+ D+V+ LI+L
Sbjct:  427 RDVNPLVWWKDNQLRFPNLAKVARSLLSIPATSAPAERIFSAAGLTVTKLRSSLNPDTVDALIFL 491          
BLAST of mRNA_P-wetherbeei_contig19347.1.1 vs. uniprot
Match: A0A2S2PKJ7_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PKJ7_SCHGA)

HSP 1 Score: 73.2 bits (178), Expect = 1.510e-14
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   28 NPLLWWKEHEMEFPNLAKLAKRVLCIPATSAPLKRLFSVAGQTEMQDRNRLSLDSVELLIYLR 216
            +P +WWKEHE  +P +AK+AK +LCIPA+SA  +R+FS AG      RNRL+  +V  L++L+
Sbjct:  103 DPCVWWKEHETIYPTIAKVAKNMLCIPASSASSERVFSTAGNIVTSKRNRLNAKNVSTLVFLK 165          
BLAST of mRNA_P-wetherbeei_contig19347.1.1 vs. uniprot
Match: A0A7S3PTX0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTX0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.610e-14
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    7 GTDKKPTNPLLWWKEHEMEFPNLAKLAKRVLCIPATSAPLKRLFSVAGQTEMQDRNRLSLDSVELLIYLR 216
              DK   +PL WWK++  E+PN+  LAKR+L +PATSAP +R+FSVA     + R  L  D+V +L++L+
Sbjct:   86 NADKGFNSPLQWWKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLK 155          
BLAST of mRNA_P-wetherbeei_contig19347.1.1 vs. uniprot
Match: A0A498M8L4_LABRO (Zinc finger BED domain-containing 1-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M8L4_LABRO)

HSP 1 Score: 74.3 bits (181), Expect = 3.350e-14
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    4 LGTDKKPTNPLLWWKEHEMEFPNLAKLAKRVLCIPATSAPLKRLFSVAGQTEMQDRNRLSLDSVELLIYL 213
            L T     NPL WWKE+E EFP LAK+A+++LCIPATS   +RLFS +G  +   R+ L  D + +L++L
Sbjct:  215 LPTISVDKNPLQWWKENEQEFPRLAKVAQKILCIPATSVASERLFSSSGNIQTVFRSSLKPDKLNMLVFL 284          
BLAST of mRNA_P-wetherbeei_contig19347.1.1 vs. uniprot
Match: A0A498MDT5_LABRO (Zinc finger BED domain-containing 1-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498MDT5_LABRO)

HSP 1 Score: 74.7 bits (182), Expect = 3.750e-14
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   25 TNPLLWWKEHEMEFPNLAKLAKRVLCIPATSAPLKRLFSVAGQTEMQDRNRLSLDSVELLIYLR 216
            +NPL+WWK+++ +FP+LAKLAK  L IPATS P +R+FS AG      R  LS DSV+++++L+
Sbjct:  278 SNPLVWWKDNQNQFPHLAKLAKSYLGIPATSVPSERVFSTAGDIVTAQRASLSPDSVDMMVFLK 341          
BLAST of mRNA_P-wetherbeei_contig19347.1.1 vs. uniprot
Match: UPI0007B8209D (zinc finger BED domain-containing protein 1-like n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B8209D)

HSP 1 Score: 71.6 bits (174), Expect = 6.120e-14
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   31 PLLWWKEHEMEFPNLAKLAKRVLCIPATSAPLKRLFSVAGQTEMQDRNRLSLDSVELLIYL 213
            P  WWK + + FP LAKLA+R LCIPATS P +R+FS AG T  + R+RL+ D V +LI+L
Sbjct:  107 PTDWWKVNGIRFPGLAKLARRYLCIPATSVPSERVFSAAGLTVTRLRSRLTPDHVNMLIFL 167          
BLAST of mRNA_P-wetherbeei_contig19347.1.1 vs. uniprot
Match: UPI001EAFD25A (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFD25A)

HSP 1 Score: 73.6 bits (179), Expect = 7.590e-14
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   28 NPLLWWKEHEMEFPNLAKLAKRVLCIPATSAPLKRLFSVAGQTEMQDRNRLSLDSVELLIYLR 216
            +PLLWWK H   +P LAK+AKR LCIPATS P +R+FS AG      R  L    V++LI+L+
Sbjct:  241 DPLLWWKNHADMYPRLAKMAKRYLCIPATSVPSERVFSTAGDIVSHQRANLKAKHVDMLIFLK 303          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19347.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5DAF9_9INSE9.220e-1653.03Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ep... [more]
A0A1A8B204_NOTFU1.030e-1548.576-phosphofructo-2-kinase/fructose-2, 6-biphosphata... [more]
A0A1X7V8F4_AMPQE1.220e-1553.23Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A1X7SSL9_AMPQE4.270e-1552.31Dimer_Tnp_hAT domain-containing protein n=2 Tax=Am... [more]
A0A2S2PKJ7_SCHGA1.510e-1449.21Zinc finger BED domain-containing protein 1 (Fragm... [more]
A0A7S3PTX0_9STRA2.610e-1445.71Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A498M8L4_LABRO3.350e-1448.57Zinc finger BED domain-containing 1-like protein n... [more]
A0A498MDT5_LABRO3.750e-1451.56Zinc finger BED domain-containing 1-like protein n... [more]
UPI0007B8209D6.120e-1455.74zinc finger BED domain-containing protein 1-like n... [more]
UPI001EAFD25A7.590e-1452.38E3 SUMO-protein ligase ZBED1-like n=1 Tax=Haliotis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19347contigP-wetherbeei_contig19347:296..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15702022
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size216
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.05e-16
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,39SKR@33154|Opisthokonta,3BBS9@33208|Metazoa
DescriptionhAT family C-terminal dimerisation region
Cds size216
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186170.080774-CDS-P-wetherbeei_contig19347:295..5111683186170.080774-CDS-P-wetherbeei_contig19347:295..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19347 296..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19347.1.1prot_P-wetherbeei_contig19347.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19347 296..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19347.1.1

>prot_P-wetherbeei_contig19347.1.1 ID=prot_P-wetherbeei_contig19347.1.1|Name=mRNA_P-wetherbeei_contig19347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
MLGTDKKPTNPLLWWKEHEMEFPNLAKLAKRVLCIPATSAPLKRLFSVAG
QTEMQDRNRLSLDSVELLIYLR
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mRNA from alignment at P-wetherbeei_contig19347:296..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19347.1.1 ID=mRNA_P-wetherbeei_contig19347.1.1|Name=mRNA_P-wetherbeei_contig19347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig19347:296..511- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGGCACGGACAAAAAGCCAACGAACCCGCTGCTATGGTGGAAGGA ACACGAGATGGAATTCCCGAATCTTGCCAAGCTGGCGAAGCGGGTGTTGT GTATCCCGGCCACATCGGCACCGTTAAAGCGCCTCTTCTCGGTGGCAGGG CAGACGGAGATGCAGGATCGAAACCGCCTCTCGTTGGACTCAGTGGAGCT ACTGATCTACCTCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19347:296..511-

>mRNA_P-wetherbeei_contig19347.1.1 ID=mRNA_P-wetherbeei_contig19347.1.1|Name=mRNA_P-wetherbeei_contig19347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig19347:296..511- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGGCACGGACAAAAAGCCAACGAACCCGCTGCTATGGTGGAAGGA
ACACGAGATGGAATTCCCGAATCTTGCCAAGCTGGCGAAGCGGGTGTTGT
GTATCCCGGCCACATCGGCACCGTTAAAGCGCCTCTTCTCGGTGGCAGGG
CAGACGGAGATGCAGGATCGAAACCGCCTCTCGTTGGACTCAGTGGAGCT
ACTGATCTACCTCCGC
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