mRNA_P-wetherbeei_contig1926.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1926.3.1
Unique NamemRNA_P-wetherbeei_contig1926.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1926.3.1 vs. uniprot
Match: A0A7S2V5C5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5C5_9STRA)

HSP 1 Score: 200 bits (509), Expect = 3.390e-63
Identity = 95/138 (68.84%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 VKMVSVGEAAPDFALKDQDGKTVKLSSFKGKKSVVIFFYPKDETPGCTKEACAFNDNLNQFGKVGAEVFGVSSDADHTAFANKYGLGMSLLSDIGGKVRKEYKVPAALFGALDGRVTYVIDKKGVVQLVYDNAFAPET 414
            + MVS G+AAP F+LKDQ G T+ L+S+KGKK VV+FFYPKD+TPGCTKEA AFN NL++F K+GAEV G+SSDADH+AF  KYGL M LLSDI G VRK++KVP++LFGALDGRVTYVI K G+V+ +YDN F PE+
Sbjct:   47 LSMVSEGQAAPSFSLKDQSGSTITLASYKGKKDVVLFFYPKDDTPGCTKEAQAFNANLDEFQKMGAEVIGISSDADHSAFVEKYGLKMKLLSDINGAVRKQFKVPSSLFGALDGRVTYVIGKDGIVKKIYDNQFNPES 184          
BLAST of mRNA_P-wetherbeei_contig1926.3.1 vs. uniprot
Match: W7TJV0_9STRA (Peroxiredoxin q n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJV0_9STRA)

HSP 1 Score: 199 bits (505), Expect = 8.490e-63
Identity = 96/138 (69.57%), Postives = 114/138 (82.61%), Query Frame = 1
Query:    1 VKMVSVGEAAPDFALKDQDGKTVKLSSFKGKKSVVIFFYPKDETPGCTKEACAFNDNLNQFGKVGAEVFGVSSDADHTAFANKYGLGMSLLSDIGGKVRKEYKVPAALFGALDGRVTYVIDKKGVVQLVYDNAFAPET 414
            + M+ VG+AAPDFALKDQ+ K VKLS+FKGKK VV+FFYPKD+TPGCTKEA AF+  L  F K GAEVFG+SSD DHTAF +KYGL M LLSD+GG  RK Y+VP++LFGALDGRVTYVI K   ++L+YDN FAPE+
Sbjct:   33 MNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPES 170          
BLAST of mRNA_P-wetherbeei_contig1926.3.1 vs. uniprot
Match: A0A0G4FWI1_VITBC (Thioredoxin domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FWI1_VITBC)

HSP 1 Score: 189 bits (479), Expect = 1.230e-58
Identity = 94/138 (68.12%), Postives = 111/138 (80.43%), Query Frame = 1
Query:    1 VKMVSVGEAAPDFALKDQDGKTVKLSSFKGKKSVVIFFYPKDETPGCTKEACAFNDNLNQFGKVGAEVFGVSSDADHTAFANKYGLGMSLLSDIGGKVRKEYKVPAALFGALDGRVTYVIDKKGVVQLVYDNAFAPET 414
            + MV VGE APDF+LKDQ GK VKLSSFK KKSVV+FFYP D TPGCTK+A AFN  L+ F K+GAEV GVSSDADH+ F + YGL M+LLSDIGG+VRK+++VP A+FGAL GRVTYVI K G+V+ VYDN    E+
Sbjct:   48 LSMVKVGEMAPDFSLKDQSGKVVKLSSFKNKKSVVVFFYPADMTPGCTKQAQAFNTALDDFKKLGAEVIGVSSDADHSEFISAYGLKMTLLSDIGGEVRKQWQVPGAMFGALPGRVTYVIGKDGIVKKVYDNLLDSES 185          
BLAST of mRNA_P-wetherbeei_contig1926.3.1 vs. uniprot
Match: A0A835Z8Y3_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y3_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.040e-55
Identity = 86/138 (62.32%), Postives = 106/138 (76.81%), Query Frame = 1
Query:    1 VKMVSVGEAAPDFALKDQDGKTVKLSSFKGKKSVVIFFYPKDETPGCTKEACAFNDNLNQFGKVGAEVFGVSSDADHTAFANKYGLGMSLLSDIGGKVRKEYKVPAALFGALDGRVTYVIDKKGVVQLVYDNAFAPET 414
            ++MV  G++APDF LKD  GK+V LSSFKGKK+VV+FF+PK +TPGCTKEACAFN  L  F K G E+ G+SSDA+  AF  KY LGM+LL+D GG VRK Y VP ++FGALDGRVTYVI K G+V+ V+DN    E+
Sbjct:   27 LRMVKAGDSAPDFTLKDSAGKSVSLSSFKGKKNVVLFFFPKSDTPGCTKEACAFNAELPVFAKAGTEIIGISSDAEQAAFKAKYNLGMTLLADAGGAVRKLYNVPRSMFGALDGRVTYVIGKDGIVKKVHDNLIDAES 164          
BLAST of mRNA_P-wetherbeei_contig1926.3.1 vs. uniprot
Match: D8LJF6_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF6_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 2.400e-55
Identity = 88/130 (67.69%), Postives = 102/130 (78.46%), Query Frame = 1
Query:    7 MVSVGEAAPDFALKDQDGKTVKLSSFKGKKSVVIFFYPKDETPGCTKEACAFNDNLNQFGKVGAEVFGVSSDADHTAFANKYGLGMSLLSDIGGKVRKEYKVPAALFGALDGRVTYVIDKKGVVQLVYDN 396
            MVSVG+AAPDF L +Q+GK V LSSFK KK VV+FFYPKD TPGCTKEA  F  +L +F K GAEV G+SSDADHT F  +  L M+LLSDIGGKVRK +KV  A+FG +DGRVTYV+DK GVV  +YDN
Sbjct:    1 MVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDN 130          
BLAST of mRNA_P-wetherbeei_contig1926.3.1 vs. uniprot
Match: A0A6H5KL96_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL96_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 4.950e-55
Identity = 87/132 (65.91%), Postives = 104/132 (78.79%), Query Frame = 1
Query:    1 VKMVSVGEAAPDFALKDQDGKTVKLSSFKGKKSVVIFFYPKDETPGCTKEACAFNDNLNQFGKVGAEVFGVSSDADHTAFANKYGLGMSLLSDIGGKVRKEYKVPAALFGALDGRVTYVIDKKGVVQLVYDN 396
            ++MVSVG+AAPDF L +Q+GK V LSSFK KK VV+FFYPKD TPGCTKEA  F  +L +F K GAEV G+SSDADHT F  +  L M+LLSDIGGKVRK +KV  A+FG +DGRVTYV+DK G+V  +YDN
Sbjct:   44 LRMVSVGQAAPDFKLNNQNGKPVTLSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGIVTSMYDN 175          
BLAST of mRNA_P-wetherbeei_contig1926.3.1 vs. uniprot
Match: A0A835QDD0_VANPL (Thioredoxin-dependent peroxiredoxin n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QDD0_VANPL)

HSP 1 Score: 174 bits (441), Expect = 2.010e-53
Identity = 89/136 (65.44%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   10 VSVGEAAPDFALKDQDGKTVKLSSFKGKKSVVIFFYPKDETPGCTKEACAFNDNLNQFGKVGAEVFGVSSD--ADHTAFANKYGLGMSLLSDIGGKVRKEYKVPAALFGALDGRVTYVIDKKGVVQLVYDNAFAPE 411
            VS G+  P+F LKDQDGKTV LS FKGK  +V++FYP DETPGCTKEACAF D+  +F K GAEV G+S D  + H AFA KY L  +LLSD G KVRKE+ VP+ LFG L GR TYVIDKKGV+QLVY+N F PE
Sbjct:    7 VSKGDVPPNFNLKDQDGKTVSLSKFKGK-PIVVYFYPADETPGCTKEACAFRDSYEKFKKAGAEVVGISGDDPSSHKAFAKKYRLPFTLLSDDGNKVRKEWGVPSDLFGTLPGRQTYVIDKKGVIQLVYNNQFQPE 141          
BLAST of mRNA_P-wetherbeei_contig1926.3.1 vs. uniprot
Match: A0A8B8P7F9_9MYRT (Thioredoxin-dependent peroxiredoxin n=2 Tax=Myrtoideae TaxID=1699513 RepID=A0A8B8P7F9_9MYRT)

HSP 1 Score: 173 bits (439), Expect = 2.610e-52
Identity = 87/136 (63.97%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   10 VSVGEAAPDFALKDQDGKTVKLSSFKGKKSVVIFFYPKDETPGCTKEACAFNDNLNQFGKVGAEVFGVSSD--ADHTAFANKYGLGMSLLSDIGGKVRKEYKVPAALFGALDGRVTYVIDKKGVVQLVYDNAFAPE 411
            V+ G+A P F LKDQDGK V LS FKGK  VV++FYP DETPGCTK+ACAF D+  +F K GAEV G+S D  + H AFA KY L  +LLSD+G KVRKE+ VP+ LFGAL GR TYV+DK GVVQL+Y+N F PE
Sbjct:   67 VNKGQAPPSFTLKDQDGKNVNLSKFKGK-PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYRLPFTLLSDVGDKVRKEWGVPSDLFGALPGRQTYVLDKNGVVQLIYNNQFQPE 201          
BLAST of mRNA_P-wetherbeei_contig1926.3.1 vs. uniprot
Match: PRXQ_POPJC (Peroxiredoxin Q, chloroplastic n=11 Tax=Saliceae TaxID=238069 RepID=PRXQ_POPJC)

HSP 1 Score: 173 bits (438), Expect = 3.590e-52
Identity = 87/136 (63.97%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   10 VSVGEAAPDFALKDQDGKTVKLSSFKGKKSVVIFFYPKDETPGCTKEACAFNDNLNQFGKVGAEVFGVSSD--ADHTAFANKYGLGMSLLSDIGGKVRKEYKVPAALFGALDGRVTYVIDKKGVVQLVYDNAFAPE 411
            V+ G+A P F LKDQDGKT+ LS FKGK  VV++FYP DETPGCTK+ACAF D+  +F K GAEV G+S D  + H AFA KY L  +LLSD G K+RKE+ VPA LFG L GR TYV+DKKGVVQL+Y+N F PE
Sbjct:   66 VNKGQAPPSFTLKDQDGKTLSLSKFKGK-PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVVGISGDDPSSHKAFAKKYRLPFTLLSDEGNKIRKEWGVPADLFGTLPGRQTYVLDKKGVVQLIYNNQFQPE 200          
BLAST of mRNA_P-wetherbeei_contig1926.3.1 vs. uniprot
Match: A0A6P6SSQ7_COFAR (Thioredoxin-dependent peroxiredoxin n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6SSQ7_COFAR)

HSP 1 Score: 173 bits (438), Expect = 3.700e-52
Identity = 88/136 (64.71%), Postives = 102/136 (75.00%), Query Frame = 1
Query:   10 VSVGEAAPDFALKDQDGKTVKLSSFKGKKSVVIFFYPKDETPGCTKEACAFNDNLNQFGKVGAEVFGVSSD--ADHTAFANKYGLGMSLLSDIGGKVRKEYKVPAALFGALDGRVTYVIDKKGVVQLVYDNAFAPE 411
            VS G  AP F+LKDQDGKTV LS FKGK  VV++FYP DETPGCTK+ACAF D+  +F K GAEV G+S D  + H AFA KY L  +LLSD G KVRK++ VPA LFG L GR TYV+DK GVVQL+Y+N F PE
Sbjct:   67 VSKGSVAPSFSLKDQDGKTVSLSKFKGK-PVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDPSSHKAFAKKYRLPFTLLSDEGNKVRKDWGVPADLFGTLPGRQTYVLDKNGVVQLIYNNQFQPE 201          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1926.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V5C5_9STRA3.390e-6368.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TJV0_9STRA8.490e-6369.57Peroxiredoxin q n=3 Tax=Monodopsidaceae TaxID=4250... [more]
A0A0G4FWI1_VITBC1.230e-5868.12Thioredoxin domain-containing protein n=2 Tax=Vitr... [more]
A0A835Z8Y3_9STRA2.040e-5562.32Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
D8LJF6_ECTSI2.400e-5567.69Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KL96_9PHAE4.950e-5565.91Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A835QDD0_VANPL2.010e-5365.44Thioredoxin-dependent peroxiredoxin n=1 Tax=Vanill... [more]
A0A8B8P7F9_9MYRT2.610e-5263.97Thioredoxin-dependent peroxiredoxin n=2 Tax=Myrtoi... [more]
PRXQ_POPJC3.590e-5263.97Peroxiredoxin Q, chloroplastic n=11 Tax=Saliceae T... [more]
A0A6P6SSQ7_COFAR3.700e-5264.71Thioredoxin-dependent peroxiredoxin n=3 Tax=Coffea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1926contigP-wetherbeei_contig1926:2659..3683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LJF6
PFAMsAhpC-TSA
Model size414
Max annot lvl2759|Eukaryota
KEGG koko:K03564
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.8e-56
EggNOG OGsCOG1225@1|root,KOG0855@2759|Eukaryota
Ec32 ortholog descriptionAlkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant
Ec32 orthologEc-06_010010.1
EC1.11.1.15
Descriptionperoxiredoxin activity
Cds size408
COG categoryO
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186168.25334-UTR-P-wetherbeei_contig1926:2658..26641683186168.25334-UTR-P-wetherbeei_contig1926:2658..2664Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1926 2659..2664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186168.2728202-CDS-P-wetherbeei_contig1926:2664..27241683186168.2728202-CDS-P-wetherbeei_contig1926:2664..2724Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1926 2665..2724 +
1683186168.2803507-CDS-P-wetherbeei_contig1926:2936..30181683186168.2803507-CDS-P-wetherbeei_contig1926:2936..3018Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1926 2937..3018 +
1683186168.2875452-CDS-P-wetherbeei_contig1926:3171..32821683186168.2875452-CDS-P-wetherbeei_contig1926:3171..3282Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1926 3172..3282 +
1683186168.2948627-CDS-P-wetherbeei_contig1926:3528..36831683186168.2948627-CDS-P-wetherbeei_contig1926:3528..3683Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1926 3529..3683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1926.3.1prot_P-wetherbeei_contig1926.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1926 2665..3683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1926.3.1

>prot_P-wetherbeei_contig1926.3.1 ID=prot_P-wetherbeei_contig1926.3.1|Name=mRNA_P-wetherbeei_contig1926.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MVSVGEAAPDFALKDQDGKTVKLSSFKGKKSVVIFFYPKDETPGCTKEAC
AFNDNLNQFGKVGAEVFGVSSDADHTAFANKYGLGMSLLSDIGGKVRKEY
KVPAALFGALDGRVTYVIDKKGVVQLVYDNAFAPET
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mRNA from alignment at P-wetherbeei_contig1926:2659..3683+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1926.3.1 ID=mRNA_P-wetherbeei_contig1926.3.1|Name=mRNA_P-wetherbeei_contig1926.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1025bp|location=Sequence derived from alignment at P-wetherbeei_contig1926:2659..3683+ (Phaeothamnion wetherbeei SAG_119_79)
GTTAAGATGGTTAGCGTGGGCGAGGCAGCTCCAGACTTCGCGCTTAAGGA CCAAGATGGCAAGACGGTCAGTTCACCGCAACATTGTGCTTGTCCGTCGC GTAACATTGTCCTCTTCCCGTTTGCGCCCTATCATCAAAGAAACCATTCA ACGTACAATATTATCCTATTCCTTCTGGAACGAACCCTCCCTTTGTAAGC CGCCGTCGCCGCGGTCGTCTCGTTGACTTGCCATCATCGCCATTGCCCAA AATCGCCACTAATGAATGTCGTTGTCAGGTCAAGCTGAGCTCATTCAAGG GAAAGAAGTCCGTCGTGATCTTTTTCTATCCCAAGGACGAGACTCCGGGA TGCACGAAAGGTTAGTCGAATAAGGCCATCACCATTTATTTCCGCATACA CAATCAGACTGCGCGGAACCAGGCGCGTCGATAGCAATCGAGAGCTCAAG TAATTAACCACTGCTTGTCTGCATCCTTCTGCGGCCCTCCCCTCAAAACT GCCCGCGGCGCAGAGGCATGCGCATTCAACGATAACCTGAACCAATTCGG CAAAGTGGGTGCAGAGGTCTTCGGTGTTTCGAGCGACGCCGACCACACGG CTTTCGCCAATAAGTACGGACTCGGTGAGTGCATTCTTCTTGCCAATACT GCTAGTACCACCAACATAGCGGGCGGAATTGCCGGAATTGCGAATGCGGA AAGGAAGAGATTTGATTGTCAGTTTTACACTTCCCAAAGTGCCTGTCCTG CGAAACCAAACACATCTTCCCCGCCCTTCACACTGCTGCCTCTTACGGAC TAACCAACTCCCCCCACTGGGTTCCGCATCTTCTCGGCCAAACCCTCTTG TGTTCCTCTTCTGCACGCAGGCATGTCGCTGCTTTCGGACATCGGGGGCA AGGTCCGAAAGGAATACAAGGTTCCCGCAGCCCTCTTCGGGGCGCTGGAC GGCCGCGTGACGTACGTCATCGACAAGAAGGGCGTCGTGCAGCTCGTCTA CGACAACGCCTTCGCCCCCGAGACT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1926:2659..3683+

>mRNA_P-wetherbeei_contig1926.3.1 ID=mRNA_P-wetherbeei_contig1926.3.1|Name=mRNA_P-wetherbeei_contig1926.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig1926:2659..3683+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTAGCGTGGGCGAGGCAGCTCCAGACTTCGCGCTTAAGGACCAAGA
TGGCAAGACGGTCAAGCTGAGCTCATTCAAGGGAAAGAAGTCCGTCGTGA
TCTTTTTCTATCCCAAGGACGAGACTCCGGGATGCACGAAAGAGGCATGC
GCATTCAACGATAACCTGAACCAATTCGGCAAAGTGGGTGCAGAGGTCTT
CGGTGTTTCGAGCGACGCCGACCACACGGCTTTCGCCAATAAGTACGGAC
TCGGCATGTCGCTGCTTTCGGACATCGGGGGCAAGGTCCGAAAGGAATAC
AAGGTTCCCGCAGCCCTCTTCGGGGCGCTGGACGGCCGCGTGACGTACGT
CATCGACAAGAAGGGCGTCGTGCAGCTCGTCTACGACAACGCCTTCGCCC
CCGAGACT
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