mRNA_P-wetherbeei_contig19231.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19231.3.1
Unique NamemRNA_P-wetherbeei_contig19231.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19231.3.1 vs. uniprot
Match: A0A1F4EZM4_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4EZM4_9PROT)

HSP 1 Score: 218 bits (555), Expect = 8.160e-71
Identity = 102/141 (72.34%), Postives = 114/141 (80.85%), Query Frame = 1
Query:    4 MFNPSREQVRDFFFETWRKYRAAEPLAGLETVALDIALLHPEYHPVLDAPERFREQEYFPELGETNPFLHMSLHMALEEQLSIDQPKGVAGAFAALMARTGDRHEALHQAIECLAEMVWRSQRDGTPPDPLAYLDNLARRG 426
            MF P+REQ R  FFE WRKYRA EPLAG+E +ALD+ LLHPEYH VL  PER+R++EYFPELGETNPFLHMSLH+ALEEQLSIDQP G+A    AL  R GDRH+ALHQAIECLAE VWR+QR+G  PD  AYLD L  RG
Sbjct:    1 MFQPTREQARGLFFEAWRKYRAGEPLAGMEALALDVILLHPEYHAVLGEPERYRDREYFPELGETNPFLHMSLHVALEEQLSIDQPPGIAALLRALAERRGDRHDALHQAIECLAETVWRAQREGAAPDASAYLDCLRNRG 141          
BLAST of mRNA_P-wetherbeei_contig19231.3.1 vs. uniprot
Match: A0A0S8AVU3_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8AVU3_9PROT)

HSP 1 Score: 214 bits (545), Expect = 3.210e-69
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1
Query:    4 MFNPSREQVRDFFFETWRKYRAAEPLAGLETVALDIALLHPEYHPVLDAPERFREQEYFPELGETNPFLHMSLHMALEEQLSIDQPKGVAGAFAALMARTGDRHEALHQAIECLAEMVWRSQRDGTPPDPLAYLDNLARRGR 429
            +F+P+R+QVR FFF+TWRKYRA  PLAGLE + LD+ LLHPEYH VLD PE+   QEYFPE GETNPFLH+SLH+ALEEQLSIDQP G+AG FA L AR G+RH ALH+A+ECLAE VWRSQRD   PD  AYL+ LARR R
Sbjct:    6 VFDPTRDQVRSFFFDTWRKYRAGTPLAGLEAIGLDVILLHPEYHRVLDDPEKTLAQEYFPEDGETNPFLHLSLHLALEEQLSIDQPPGIAGHFATLAARHGERHAALHEALECLAETVWRSQRDRAAPDGAAYLECLARRAR 147          
BLAST of mRNA_P-wetherbeei_contig19231.3.1 vs. uniprot
Match: A0A1F4ATV4_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4ATV4_9PROT)

HSP 1 Score: 212 bits (539), Expect = 2.240e-68
Identity = 98/142 (69.01%), Postives = 114/142 (80.28%), Query Frame = 1
Query:    4 MFNPSREQVRDFFFETWRKYRAAEPLAGLETVALDIALLHPEYHPVLDAPERFREQEYFPELGETNPFLHMSLHMALEEQLSIDQPKGVAGAFAALMARTGDRHEALHQAIECLAEMVWRSQRDGTPPDPLAYLDNLARRGR 429
            MFNPSREQVR+FFF TWRKYRA EPL+GLE +ALD+ L HPEY   L+ PER RE++Y PE GE NPFLH+SLH+ALEEQLS+DQP+G+A  FAAL++   DRH ALH A+ECL EMVWR+Q D  PPD  AYLD LARR R
Sbjct:    1 MFNPSREQVREFFFATWRKYRAGEPLSGLEAMALDVVLAHPEYQSALETPERTRERDYLPESGEANPFLHLSLHLALEEQLSVDQPRGIAERFAALLSARNDRHAALHDALECLGEMVWRAQLDRAPPDGEAYLDCLARRAR 142          
BLAST of mRNA_P-wetherbeei_contig19231.3.1 vs. uniprot
Match: A0A2R5F797_9PROT (Uncharacterized protein n=1 Tax=Novimethylophilus kurashikiensis TaxID=1825523 RepID=A0A2R5F797_9PROT)

HSP 1 Score: 206 bits (525), Expect = 3.240e-66
Identity = 92/141 (65.25%), Postives = 116/141 (82.27%), Query Frame = 1
Query:    1 AMFNPSREQVRDFFFETWRKYRAAEPLAGLETVALDIALLHPEYHPVLDAPERFREQEYFPELGETNPFLHMSLHMALEEQLSIDQPKGVAGAFAALMARTGDRHEALHQAIECLAEMVWRSQRDGTPPDPLAYLDNLARR 423
            A+FNPSR++VR FFFE WRKYR +EPL  LE +A+++  LHPEYH VLDAP+R+R+Q+YFPE+GETNPFLHMSLH+++ EQLSIDQP G+A A+ AL  R  D+HEALH  +ECLAE VWR+QRD TPPD  AYL+ + +R
Sbjct:    2 ALFNPSRDEVRQFFFEAWRKYRVSEPLTALEGMAVEVIALHPEYHAVLDAPDRYRDQDYFPEMGETNPFLHMSLHLSILEQLSIDQPPGIAAAYRALQQRLDDQHEALHGLMECLAETVWRAQRDKTPPDAGAYLECMRKR 142          
BLAST of mRNA_P-wetherbeei_contig19231.3.1 vs. uniprot
Match: A0A537A9T0_9PROT (DUF1841 family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A9T0_9PROT)

HSP 1 Score: 204 bits (519), Expect = 2.570e-65
Identity = 97/141 (68.79%), Postives = 115/141 (81.56%), Query Frame = 1
Query:    4 MFNPSREQVRDFFFETWRKYRAAEPLAGLETVALDIALLHPEYHPVLDAPERFREQEYFPELGETNPFLHMSLHMALEEQLSIDQPKGVAGAFAALMARTGDRHEALHQAIECLAEMVWRSQRDGTPPDPLAYLDNLARRG 426
            MF+PSREQVR+ FF  WRKYRAAE L G+ET+ALD+ L HPEYH +L+ PER+RE++Y   + E NPFLH+SLHMALEEQLSIDQP G+A  F AL+ R G RH+ALH+AIECLAE VWR+QRDG PPD  AYL+ LARRG
Sbjct:    1 MFDPSREQVRETFFTAWRKYRAAELLVGIETIALDVILAHPEYHALLNDPERYREKDY---VDEANPFLHLSLHMALEEQLSIDQPPGIAEHFRALVQRRGQRHDALHEAIECLAETVWRAQRDGAPPDAAAYLECLARRG 138          
BLAST of mRNA_P-wetherbeei_contig19231.3.1 vs. uniprot
Match: A0A536YDI8_9PROT (DUF1841 family protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YDI8_9PROT)

HSP 1 Score: 200 bits (508), Expect = 1.070e-63
Identity = 95/143 (66.43%), Postives = 112/143 (78.32%), Query Frame = 1
Query:    4 MFNPSREQVRDFFFETWRKYRAAEPLAGLETVALDIALLHPEYHPVLDAPERFREQEYFPELGETNPFLHMSLHMALEEQLSIDQPKGVAGAFAALMARTGDRHEALHQAIECLAEMVWRSQRDGTPPDPLAYLDNLARRGRK 432
            MF+PSREQVRD FF  WRKYRA EPLAG+ET+AL++ L HPEYH +L   ER+R+Q+Y     E NPFLHMSLH+ALEEQLSIDQP G+   F  L+ RTG+RHEALH+AIECLAE VWR+ RD  PPD  AYL+ L RRGR+
Sbjct:    1 MFDPSREQVRDTFFSAWRKYRAGEPLAGIETIALEVMLAHPEYHALLADAERYRDQDY---ADEPNPFLHMSLHVALEEQLSIDQPPGIRARFEQLIMRTGERHEALHEAIECLAETVWRASRDHAPPDAQAYLECLERRGRR 140          
BLAST of mRNA_P-wetherbeei_contig19231.3.1 vs. uniprot
Match: A0A2W4JXU0_9PROT (DUF1841 domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4JXU0_9PROT)

HSP 1 Score: 199 bits (507), Expect = 1.520e-63
Identity = 91/140 (65.00%), Postives = 110/140 (78.57%), Query Frame = 1
Query:    4 MFNPSREQVRDFFFETWRKYRAAEPLAGLETVALDIALLHPEYHPVLDAPERFREQEYFPELGETNPFLHMSLHMALEEQLSIDQPKGVAGAFAALMARTGDRHEALHQAIECLAEMVWRSQRDGTPPDPLAYLDNLARR 423
            MFNP+REQVR FFF+ WRKYR   PL GLETVA+++AL+HPEYH VLD PER+ +++Y PE G+ NPFLHMSLH+A+ EQLSIDQP G+   F  L+   GDRHEALH  +ECL E+VWR+QRD TPPD  AYL+ L RR
Sbjct:    1 MFNPTREQVRQFFFDAWRKYRQGAPLEGLETVAVEVALMHPEYHEVLDQPERYIDRQYTPEEGQMNPFLHMSLHVAIAEQLSIDQPPGIRAEFERLVRARGDRHEALHDVLECLGEIVWRAQRDRTPPDGEAYLECLRRR 140          
BLAST of mRNA_P-wetherbeei_contig19231.3.1 vs. uniprot
Match: A0A1F4FWF1_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FWF1_9PROT)

HSP 1 Score: 198 bits (504), Expect = 4.340e-63
Identity = 94/142 (66.20%), Postives = 111/142 (78.17%), Query Frame = 1
Query:    4 MFNPSREQVRDFFFETWRKYRAAEPLAGLETVALDIALLHPEYHPVLDAPERFREQEYFPELGETNPFLHMSLHMALEEQLSIDQPKGVAGAFAALMARTGDRHEALHQAIECLAEMVWRSQRDGTPPDPLAYLDNLARRGR 429
            MFNPSRE+VR+ FF  WR YR   P+AG+E +ALD+ L HPEYH +L+ PERFRE++Y     E NPFLHMSLH+ALEEQLSIDQP G+   + AL+AR G+RH+ALHQAIECLAEM+WRSQRDG PPD  AYL  L RR R
Sbjct:    1 MFNPSREEVREMFFRAWRAYRDGIPIAGIEALALDVILQHPEYHSLLEHPERFREKDY---ADEGNPFLHMSLHVALEEQLSIDQPPGIRSRWQALLARCGERHDALHQAIECLAEMLWRSQRDGLPPDAAAYLSCLERRAR 139          
BLAST of mRNA_P-wetherbeei_contig19231.3.1 vs. uniprot
Match: A0A521YZX8_9PROT (DUF1841 family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YZX8_9PROT)

HSP 1 Score: 196 bits (499), Expect = 2.510e-62
Identity = 92/142 (64.79%), Postives = 111/142 (78.17%), Query Frame = 1
Query:    4 MFNPSREQVRDFFFETWRKYRAAEPLAGLETVALDIALLHPEYHPVLDAPERFREQEYFPELGETNPFLHMSLHMALEEQLSIDQPKGVAGAFAALMARTGDRHEALHQAIECLAEMVWRSQRDGTPPDPLAYLDNLARRGR 429
            MFNPSRE+VRD FF  WR YR   PL G++  ALD+ L HPEYH +L+ P RFR+++Y   + E NPFLHMSLH+ALEEQLSIDQP G+ G + AL+AR G+RH+ALHQAIECLAEM+WRSQRDG+PPD  AYL  L R+ R
Sbjct:    1 MFNPSREEVRDMFFRAWRGYRDGVPLTGIDAAALDVILQHPEYHSLLENPGRFRDKDY---VDEGNPFLHMSLHLALEEQLSIDQPPGIRGRWQALLARRGERHDALHQAIECLAEMLWRSQRDGSPPDAAAYLSCLERQAR 139          
BLAST of mRNA_P-wetherbeei_contig19231.3.1 vs. uniprot
Match: A0A1F4DP27_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4DP27_9PROT)

HSP 1 Score: 196 bits (499), Expect = 2.760e-62
Identity = 92/142 (64.79%), Postives = 109/142 (76.76%), Query Frame = 1
Query:    4 MFNPSREQVRDFFFETWRKYRAAEPLAGLETVALDIALLHPEYHPVLDAPERFREQEYFPELGETNPFLHMSLHMALEEQLSIDQPKGVAGAFAALMARTGDRHEALHQAIECLAEMVWRSQRDGTPPDPLAYLDNLARRGR 429
            MF PSREQVR FF + W KYRA  PL GLET+ALD+ LLHPEY  VL+APER  E +Y PE+GETNPFLHMSLH+A+EEQLSIDQP G+  AF  ++ +   RH+ALH A+ECL EM+W+SQRDGT PD  AYL+ L  R R
Sbjct:    1 MFAPSREQVRQFFSDAWAKYRAGTPLQGLETIALDVILLHPEYRVVLEAPERAAEHDYTPEMGETNPFLHMSLHLAIEEQLSIDQPPGIRAAFDEVLRKADSRHDALHTALECLGEMMWKSQRDGTAPDGQAYLECLRGRHR 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19231.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4EZM4_9PROT8.160e-7172.34Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A0S8AVU3_9PROT3.210e-6971.13Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4ATV4_9PROT2.240e-6869.01Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A2R5F797_9PROT3.240e-6665.25Uncharacterized protein n=1 Tax=Novimethylophilus ... [more]
A0A537A9T0_9PROT2.570e-6568.79DUF1841 family protein n=1 Tax=Betaproteobacteria ... [more]
A0A536YDI8_9PROT1.070e-6366.43DUF1841 family protein n=2 Tax=Betaproteobacteria ... [more]
A0A2W4JXU0_9PROT1.520e-6365.00DUF1841 domain-containing protein n=1 Tax=Proteoba... [more]
A0A1F4FWF1_9PROT4.340e-6366.20Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A521YZX8_9PROT2.510e-6264.79DUF1841 family protein n=1 Tax=Betaproteobacteria ... [more]
A0A1F4DP27_9PROT2.760e-6264.79Uncharacterized protein n=2 Tax=unclassified Betap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19231contigP-wetherbeei_contig19231:611..1045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog261292.Nit79A3_3433
PFAMsDUF1841
Model size435
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.01e-57
EggNOG OGs2AFCJ@1|root,315C6@2|Bacteria,1RH66@1224|Proteobacteria,2VSTN@28216|Betaproteobacteria,37352@32003|Nitrosomonadales
DescriptionDomain of unknown function (DUF1841)
Cds size432
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186167.307988-CDS-P-wetherbeei_contig19231:610..10421683186167.307988-CDS-P-wetherbeei_contig19231:610..1042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19231 611..1042 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186167.3182325-UTR-P-wetherbeei_contig19231:1042..10451683186167.3182325-UTR-P-wetherbeei_contig19231:1042..1045Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19231 1043..1045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19231.3.1prot_P-wetherbeei_contig19231.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19231 611..1042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19231.3.1

>prot_P-wetherbeei_contig19231.3.1 ID=prot_P-wetherbeei_contig19231.3.1|Name=mRNA_P-wetherbeei_contig19231.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MFNPSREQVRDFFFETWRKYRAAEPLAGLETVALDIALLHPEYHPVLDAP
ERFREQEYFPELGETNPFLHMSLHMALEEQLSIDQPKGVAGAFAALMART
GDRHEALHQAIECLAEMVWRSQRDGTPPDPLAYLDNLARRGRK*
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mRNA from alignment at P-wetherbeei_contig19231:611..1045-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19231.3.1 ID=mRNA_P-wetherbeei_contig19231.3.1|Name=mRNA_P-wetherbeei_contig19231.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig19231:611..1045- (Phaeothamnion wetherbeei SAG_119_79)
GCGATGTTCAATCCCAGCCGCGAACAGGTGCGTGATTTCTTCTTCGAGAC CTGGCGCAAGTACCGCGCCGCCGAGCCTTTGGCAGGCCTCGAGACGGTGG CACTGGACATCGCGCTGCTGCATCCCGAGTACCATCCCGTGCTCGACGCG CCGGAACGCTTTCGCGAGCAGGAATATTTCCCCGAGCTCGGCGAAACCAA CCCGTTCCTCCACATGAGCCTGCACATGGCGCTGGAGGAGCAGTTGTCGA TCGACCAGCCGAAGGGCGTAGCTGGCGCCTTTGCCGCGCTCATGGCACGC ACGGGCGACCGCCACGAAGCGCTGCACCAGGCGATCGAATGCCTGGCCGA GATGGTGTGGCGCTCGCAAAGAGACGGCACCCCGCCGGACCCCCTCGCCT ACCTGGACAACCTGGCCAGGCGCGGCCGCAAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19231:611..1045-

>mRNA_P-wetherbeei_contig19231.3.1 ID=mRNA_P-wetherbeei_contig19231.3.1|Name=mRNA_P-wetherbeei_contig19231.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig19231:611..1045- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCAATCCCAGCCGCGAACAGGTGCGTGATTTCTTCTTCGAGACCTG
GCGCAAGTACCGCGCCGCCGAGCCTTTGGCAGGCCTCGAGACGGTGGCAC
TGGACATCGCGCTGCTGCATCCCGAGTACCATCCCGTGCTCGACGCGCCG
GAACGCTTTCGCGAGCAGGAATATTTCCCCGAGCTCGGCGAAACCAACCC
GTTCCTCCACATGAGCCTGCACATGGCGCTGGAGGAGCAGTTGTCGATCG
ACCAGCCGAAGGGCGTAGCTGGCGCCTTTGCCGCGCTCATGGCACGCACG
GGCGACCGCCACGAAGCGCTGCACCAGGCGATCGAATGCCTGGCCGAGAT
GGTGTGGCGCTCGCAAAGAGACGGCACCCCGCCGGACCCCCTCGCCTACC
TGGACAACCTGGCCAGGCGCGGCCGCAAATGA
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