mRNA_P-wetherbeei_contig19231.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19231.2.1
Unique NamemRNA_P-wetherbeei_contig19231.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19231.2.1 vs. uniprot
Match: A0A0S8AX70_9PROT (Cytochrome c domain-containing protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8AX70_9PROT)

HSP 1 Score: 142 bits (357), Expect = 1.110e-41
Identity = 75/111 (67.57%), Postives = 90/111 (81.08%), Query Frame = 1
Query:    1 VKHLLTLAAAAAFALGSAGVSAKGNAEAGKAKAAQVCAACHGPDGNKPTGPDFPILAGQLPDYLKKALSDYKTGKRNNAIMKGFAATLSNQEMDDLAAWFASQPSNLVTHR 333
            +K  LT+AA  A AL  A   A G+A AGKAKAAQVCAACHGP+GNKP+ PD PILAGQ PDYL KALSDYK+GKR+N IMKGFAATLS+++++D+AAWF+SQ S L + R
Sbjct:    1 MKRTLTIAALVALALSPA-AWAGGDAAAGKAKAAQVCAACHGPEGNKPSAPDQPILAGQYPDYLVKALSDYKSGKRSNPIMKGFAATLSDKDIEDIAAWFSSQSSGLHSTR 110          
BLAST of mRNA_P-wetherbeei_contig19231.2.1 vs. uniprot
Match: A0A1F4FWF4_9PROT (Cytochrome c domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FWF4_9PROT)

HSP 1 Score: 135 bits (341), Expect = 2.860e-39
Identity = 76/111 (68.47%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    1 VKHLLTLAAAAAFALGSAGVSAKGNAEAGKAKAAQVCAACHGPDGNKPTGPDFPILAGQLPDYLKKALSDYKTGKRNNAIMKGFAATLSNQEMDDLAAWFASQPSNLVTHR 333
            ++ LL LAA AA  +  AG+ AKGNAEAGKAKAAQVCAACHG DGNKP+ PD PILAGQ  DYL +AL+DYK G+RNN IMKGFA  LS Q+++DLAAWFASQ S L   R
Sbjct:    1 MRKLLLLAALAAVPV--AGI-AKGNAEAGKAKAAQVCAACHGADGNKPSAPDQPILAGQHYDYLVRALTDYKIGRRNNPIMKGFAGQLSKQDIEDLAAWFASQKSALQYQR 108          
BLAST of mRNA_P-wetherbeei_contig19231.2.1 vs. uniprot
Match: A0A1F4AU27_9PROT (Cytochrome c domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4AU27_9PROT)

HSP 1 Score: 135 bits (341), Expect = 3.130e-39
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 1
Query:   13 LTLAAAAAFALGSAGVSAKGNAEAGKAKAAQVCAACHGPDGNKPTGPDFPILAGQLPDYLKKALSDYKTGKRNNAIMKGFAATLSNQEMDDLAAWFASQPSNLVTHR 333
            +TLAAAAA  L SA  SAKGNAE+GKAKAAQ+CAACHG DG KP+ PD PILAGQ  DYL + L DYK+G R+NAIMKGFAA LS ++++DLAAWFASQ S L   R
Sbjct:    6 ITLAAAAALGLASA-ASAKGNAESGKAKAAQLCAACHGADGAKPSAPDQPILAGQYYDYLVQVLGDYKSGNRSNAIMKGFAAALSKKDIEDLAAWFASQKSALHFQR 111          
BLAST of mRNA_P-wetherbeei_contig19231.2.1 vs. uniprot
Match: A0A537DPG3_9PROT (Cytochrome c n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537DPG3_9PROT)

HSP 1 Score: 136 bits (343), Expect = 2.790e-38
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 1
Query:   64 AKGNAEAGKAKAAQVCAACHGPDGNKPTGPDFPILAGQLPDYLKKALSDYKTGKRNNAIMKGFAATLSNQEMDDLAAWFASQPSNLVTHR 333
            A GNAE G+A+AAQVCAACHGPDGN+P+ PD P+LAGQ  DYL KAL DYKTG+RNN IMKGFAA LS Q+MDDLAAWF+SQ S L   R
Sbjct:  120 ASGNAEGGRARAAQVCAACHGPDGNRPSTPDQPVLAGQYADYLAKALHDYKTGRRNNPIMKGFAAQLSRQDMDDLAAWFSSQKSRLHDQR 209          
BLAST of mRNA_P-wetherbeei_contig19231.2.1 vs. uniprot
Match: A0A537CRM8_9PROT (Cytochrome c n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CRM8_9PROT)

HSP 1 Score: 134 bits (338), Expect = 1.510e-37
Identity = 65/90 (72.22%), Postives = 74/90 (82.22%), Query Frame = 1
Query:   64 AKGNAEAGKAKAAQVCAACHGPDGNKPTGPDFPILAGQLPDYLKKALSDYKTGKRNNAIMKGFAATLSNQEMDDLAAWFASQPSNLVTHR 333
            A+G+AE+GKAK AQVCAACHGPDGN+P  PD P++AGQ  DYL KAL DYKTGKRNN IMKGFAA LS Q+M+DLAAWF+SQ S L   R
Sbjct:  118 ARGDAESGKAKVAQVCAACHGPDGNRPLTPDQPVIAGQYADYLAKALHDYKTGKRNNQIMKGFAAQLSRQDMEDLAAWFSSQKSRLHDQR 207          
BLAST of mRNA_P-wetherbeei_contig19231.2.1 vs. uniprot
Match: A0A1F3Y7X2_9PROT (Cytochrome c domain-containing protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3Y7X2_9PROT)

HSP 1 Score: 130 bits (328), Expect = 2.890e-37
Identity = 73/110 (66.36%), Postives = 82/110 (74.55%), Query Frame = 1
Query:    4 KHLLTLAAAAAFALGSAGVSAKGNAEAGKAKAAQVCAACHGPDGNKPTGPDFPILAGQLPDYLKKALSDYKTGKRNNAIMKGFAATLSNQEMDDLAAWFASQPSNLVTHR 333
             H L  A  A FA+ +A V AKGNAE GKAKAAQVCAACHG DG KPT PD PILAGQ PDYL KAL+DYK+GKR N IMK FA  LS Q+++D++AWFASQ S L   R
Sbjct:    3 SHALVFALIA-FAVSTA-VEAKGNAEKGKAKAAQVCAACHGADGAKPTAPDQPILAGQYPDYLVKALADYKSGKRANPIMKAFADQLSKQDIEDVSAWFASQKSALHFQR 110          
BLAST of mRNA_P-wetherbeei_contig19231.2.1 vs. uniprot
Match: A0A177R1S7_9PROT (Cytochrome c domain-containing protein n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177R1S7_9PROT)

HSP 1 Score: 128 bits (322), Expect = 2.160e-36
Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 1
Query:   49 SAGVSAKGNAEAGKAKAAQVCAACHGPDGNKPTGPDFPILAGQLPDYLKKALSDYKTGKRNNAIMKGFAATLSNQEMDDLAAWFASQPSNLVTHR 333
            +A   A+GNAE+GKAKAAQVCAACHGPDG+KP+ PD P+LAGQ  DYL +ALSDYK G R N IMKGFA  LS Q+++DLAAWF+ Q S L   R
Sbjct:   13 AASAQARGNAESGKAKAAQVCAACHGPDGSKPSAPDQPVLAGQYYDYLVRALSDYKAGHRTNGIMKGFAGQLSKQDIEDLAAWFSRQKSPLHNQR 107          
BLAST of mRNA_P-wetherbeei_contig19231.2.1 vs. uniprot
Match: A0A521YZU8_9PROT (Cytochrome c n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YZU8_9PROT)

HSP 1 Score: 126 bits (316), Expect = 1.820e-35
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1
Query:   52 AGVSAKGNAEAGKAKAAQVCAACHGPDGNKPTGPDFPILAGQLPDYLKKALSDYKTGKRNNAIMKGFAATLSNQEMDDLAAWFASQPSNL 321
            A  SAKGNA++GK+KAAQVCAACHG +G KP+ PD PILAGQ  DYL +AL+DYK GKRNN IMKGFA  LS Q+++DLAAWF+SQ S L
Sbjct:   15 AAASAKGNADSGKSKAAQVCAACHGAEGTKPSAPDQPILAGQHYDYLVRALTDYKIGKRNNPIMKGFAGQLSKQDIEDLAAWFSSQRSAL 104          
BLAST of mRNA_P-wetherbeei_contig19231.2.1 vs. uniprot
Match: A0A536SXN0_9PROT (Cytochrome c n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SXN0_9PROT)

HSP 1 Score: 124 bits (312), Expect = 7.630e-35
Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 1
Query:   34 AFALGSAGVSAKGNAEAGKAKAAQVCAACHGPDGNKPTGPDFPILAGQLPDYLKKALSDYKTGKRNNAIMKGFAATLSNQEMDDLAAWFASQ 309
            AFA+ +A   A GNA  GK KAAQVCAACHG DGNKP+ PD P+LAGQ  DYL +AL+DYK G+RNNAIMKGFA  LS Q+++DLAAWF+SQ
Sbjct:   10 AFAV-AASADAGGNAARGKNKAAQVCAACHGADGNKPSAPDQPVLAGQYQDYLARALTDYKNGRRNNAIMKGFAGQLSKQDIEDLAAWFSSQ 100          
BLAST of mRNA_P-wetherbeei_contig19231.2.1 vs. uniprot
Match: A0A1F4F946_9PROT (Cytochrome c domain-containing protein (Fragment) n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 TaxID=1797503 RepID=A0A1F4F946_9PROT)

HSP 1 Score: 122 bits (306), Expect = 3.360e-34
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 1
Query:   70 GNAEAGKAKAAQVCAACHGPDGNKPTGPDFPILAGQLPDYLKKALSDYKTGKRNNAIMKGFAATLSNQEMDDLAAWFASQPSNLVTHR 333
            GN E GK KAAQ CAACHG DG KP+ PD PILAGQ  DYL +ALSDYK+GKR+NAIMKGFAA LS ++++DLAAWFASQ S L   R
Sbjct:    1 GNPENGKTKAAQACAACHGADGAKPSAPDQPILAGQHYDYLVQALSDYKSGKRSNAIMKGFAAALSKKDIEDLAAWFASQKSPLHFQR 88          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19231.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S8AX70_9PROT1.110e-4167.57Cytochrome c domain-containing protein n=1 Tax=Bet... [more]
A0A1F4FWF4_9PROT2.860e-3968.47Cytochrome c domain-containing protein n=1 Tax=Bet... [more]
A0A1F4AU27_9PROT3.130e-3969.16Cytochrome c domain-containing protein n=1 Tax=Bet... [more]
A0A537DPG3_9PROT2.790e-3873.33Cytochrome c n=1 Tax=Betaproteobacteria bacterium ... [more]
A0A537CRM8_9PROT1.510e-3772.22Cytochrome c n=2 Tax=Betaproteobacteria bacterium ... [more]
A0A1F3Y7X2_9PROT2.890e-3766.36Cytochrome c domain-containing protein n=1 Tax=Bet... [more]
A0A177R1S7_9PROT2.160e-3666.32Cytochrome c domain-containing protein n=1 Tax=Bet... [more]
A0A521YZU8_9PROT1.820e-3570.00Cytochrome c n=1 Tax=Betaproteobacteria bacterium ... [more]
A0A536SXN0_9PROT7.630e-3568.48Cytochrome c n=1 Tax=Betaproteobacteria bacterium ... [more]
A0A1F4F946_9PROT3.360e-3470.45Cytochrome c domain-containing protein (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19231contigP-wetherbeei_contig19231:229..564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1234364.AMSF01000016_gene1521
PFAMsCytochrom_C
Model size336
Max annot lvl135614|Xanthomonadales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.23e-27
EggNOG OGsCOG2863@1|root,COG2863@2|Bacteria,1N7W9@1224|Proteobacteria,1S90Z@1236|Gammaproteobacteria,1X7SR@135614|Xanthomonadales
Descriptioncytochrome
Cds size336
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186167.2805514-CDS-P-wetherbeei_contig19231:228..5641683186167.2805514-CDS-P-wetherbeei_contig19231:228..564Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19231 229..564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19231.2.1prot_P-wetherbeei_contig19231.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19231 229..564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19231.2.1

>prot_P-wetherbeei_contig19231.2.1 ID=prot_P-wetherbeei_contig19231.2.1|Name=mRNA_P-wetherbeei_contig19231.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
VKHLLTLAAAAAFALGSAGVSAKGNAEAGKAKAAQVCAACHGPDGNKPTG
PDFPILAGQLPDYLKKALSDYKTGKRNNAIMKGFAATLSNQEMDDLAAWF
ASQPSNLVTHR*
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mRNA from alignment at P-wetherbeei_contig19231:229..564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19231.2.1 ID=mRNA_P-wetherbeei_contig19231.2.1|Name=mRNA_P-wetherbeei_contig19231.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig19231:229..564+ (Phaeothamnion wetherbeei SAG_119_79)
GTGAAGCATCTCCTCACCCTCGCCGCCGCAGCGGCATTCGCGCTCGGCAG TGCCGGCGTTTCCGCCAAGGGCAACGCCGAGGCCGGCAAGGCCAAGGCGG CCCAGGTCTGCGCCGCCTGCCATGGCCCGGACGGCAACAAGCCGACCGGC CCGGACTTCCCGATTCTCGCCGGGCAGCTGCCTGACTACCTGAAGAAGGC GTTGTCCGATTACAAGACCGGCAAGCGCAACAACGCGATCATGAAAGGCT TCGCCGCCACGCTGTCCAACCAGGAGATGGACGACCTCGCCGCCTGGTTC GCGAGCCAGCCCTCGAACCTGGTCACGCATCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19231:229..564+

>mRNA_P-wetherbeei_contig19231.2.1 ID=mRNA_P-wetherbeei_contig19231.2.1|Name=mRNA_P-wetherbeei_contig19231.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig19231:229..564+ (Phaeothamnion wetherbeei SAG_119_79)
GTGAAGCATCTCCTCACCCTCGCCGCCGCAGCGGCATTCGCGCTCGGCAG
TGCCGGCGTTTCCGCCAAGGGCAACGCCGAGGCCGGCAAGGCCAAGGCGG
CCCAGGTCTGCGCCGCCTGCCATGGCCCGGACGGCAACAAGCCGACCGGC
CCGGACTTCCCGATTCTCGCCGGGCAGCTGCCTGACTACCTGAAGAAGGC
GTTGTCCGATTACAAGACCGGCAAGCGCAACAACGCGATCATGAAAGGCT
TCGCCGCCACGCTGTCCAACCAGGAGATGGACGACCTCGCCGCCTGGTTC
GCGAGCCAGCCCTCGAACCTGGTCACGCATCGCTGA
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