mRNA_P-wetherbeei_contig1916.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1916.1.1
Unique NamemRNA_P-wetherbeei_contig1916.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1916.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1916contigP-wetherbeei_contig1916:151..1145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size656
Hectar predicted targeting categoryother localisation
Exons2
Cds size585
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186165.1851585-UTR-P-wetherbeei_contig1916:150..2211683186165.1851585-UTR-P-wetherbeei_contig1916:150..221Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1916 151..221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186165.1930535-CDS-P-wetherbeei_contig1916:221..2781683186165.1930535-CDS-P-wetherbeei_contig1916:221..278Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1916 222..278 +
1683186165.200525-CDS-P-wetherbeei_contig1916:617..11451683186165.200525-CDS-P-wetherbeei_contig1916:617..1145Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1916 618..1145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1916.1.1prot_P-wetherbeei_contig1916.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1916 222..1145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1916.1.1

>prot_P-wetherbeei_contig1916.1.1 ID=prot_P-wetherbeei_contig1916.1.1|Name=mRNA_P-wetherbeei_contig1916.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
MSPYKAPYLDILTVMASPQDPGATPKLRIEPILLAHLGHSGVPREPEHGL
FSASGTRSCYFSGIIRERLAAARAEIPRRQERAAEVAVTAAAAGAGAAGN
YDGGCSSVVRRRCREEPGYRIAGRLSRRTFEARSAPPLQSNHRPANVRAS
SASIVAGAAATAALMAEGAASLPTLEPADAAGMATEAAAIGPPAA
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mRNA from alignment at P-wetherbeei_contig1916:151..1145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1916.1.1 ID=mRNA_P-wetherbeei_contig1916.1.1|Name=mRNA_P-wetherbeei_contig1916.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=995bp|location=Sequence derived from alignment at P-wetherbeei_contig1916:151..1145+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTTTGCCGATCCCGCCGGTGGTGACGGGCCGCTGAGCAGCCCAGGAA
TCACGCGGCGAAACAGAAAAAATGTCTCCCTACAAGGCGCCATATCTCGA
CATACTGACGGTCATGGCGTCGCCGCAGGTGAGAGGCCGGTGTCTTTGGC
GAGTGATGGCTCCATTGCATTACGATGGATCAACGTGCGCTGTTGCTCTC
TTTGCATGGGTTGCCTGCCTTTCATATAGCGTTTCGGGAGGTCCTAGTTG
CAGCGCATTGAGTCATCCTGGAGGAAATGCATTCGCAGCTCAACTTTAAA
CTCTTGATGCTTATTCCGACCTCTAAGAGGACGATAAGTGGGCAGGAATT
GGGCTTTCACCCTCCCCCAATCCCCATTCTTCATCTACCGTTAGATCCTC
TGTGCTGGTTAGCCATCCTAGAACCTCCTCCTTTCCCTCTTTCAACTGAT
TTCCCGCAAACATAAAGGATCCCGGCGCCACTCCGAAGCTTCGGATCGAG
CCGATCCTCCTGGCCCACCTCGGCCACTCGGGCGTTCCGCGCGAGCCCGA
GCACGGCCTCTTCAGCGCCAGCGGCACCCGCAGCTGCTACTTCTCCGGCA
TCATCCGCGAACGGCTGGCGGCAGCGCGCGCCGAAATCCCGAGACGGCAG
GAACGAGCAGCGGAAGTAGCGGTGACGGCGGCGGCGGCAGGGGCCGGGGC
GGCGGGTAACTACGACGGCGGGTGCAGCAGCGTTGTGCGGAGACGGTGCA
GGGAGGAGCCCGGATACCGCATCGCCGGAAGGCTGTCGCGTCGCACCTTT
GAGGCACGCTCGGCGCCACCGCTGCAGTCGAACCACCGTCCTGCGAATGT
CCGGGCGTCGTCCGCGTCAATTGTGGCAGGAGCGGCTGCAACAGCTGCGC
TGATGGCGGAAGGAGCAGCCTCGCTCCCGACGCTGGAACCTGCTGACGCA
GCCGGCATGGCGACGGAGGCCGCAGCAATTGGACCACCGGCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1916:151..1145+

>mRNA_P-wetherbeei_contig1916.1.1 ID=mRNA_P-wetherbeei_contig1916.1.1|Name=mRNA_P-wetherbeei_contig1916.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig1916:151..1145+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTCCCTACAAGGCGCCATATCTCGACATACTGACGGTCATGGCGTC
GCCGCAGGATCCCGGCGCCACTCCGAAGCTTCGGATCGAGCCGATCCTCC
TGGCCCACCTCGGCCACTCGGGCGTTCCGCGCGAGCCCGAGCACGGCCTC
TTCAGCGCCAGCGGCACCCGCAGCTGCTACTTCTCCGGCATCATCCGCGA
ACGGCTGGCGGCAGCGCGCGCCGAAATCCCGAGACGGCAGGAACGAGCAG
CGGAAGTAGCGGTGACGGCGGCGGCGGCAGGGGCCGGGGCGGCGGGTAAC
TACGACGGCGGGTGCAGCAGCGTTGTGCGGAGACGGTGCAGGGAGGAGCC
CGGATACCGCATCGCCGGAAGGCTGTCGCGTCGCACCTTTGAGGCACGCT
CGGCGCCACCGCTGCAGTCGAACCACCGTCCTGCGAATGTCCGGGCGTCG
TCCGCGTCAATTGTGGCAGGAGCGGCTGCAACAGCTGCGCTGATGGCGGA
AGGAGCAGCCTCGCTCCCGACGCTGGAACCTGCTGACGCAGCCGGCATGG
CGACGGAGGCCGCAGCAATTGGACCACCGGCGGCC
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