mRNA_P-wetherbeei_contig18924.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18924.1.1
Unique NamemRNA_P-wetherbeei_contig18924.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18924.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18924contigP-wetherbeei_contig18924:107..1046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size942
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186159.0997062-CDS-P-wetherbeei_contig18924:106..5891683186159.0997062-CDS-P-wetherbeei_contig18924:106..589Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18924 107..589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186159.1093204-UTR-P-wetherbeei_contig18924:589..10461683186159.1093204-UTR-P-wetherbeei_contig18924:589..1046Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18924 590..1046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18924.1.1prot_P-wetherbeei_contig18924.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18924 107..589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18924.1.1

>prot_P-wetherbeei_contig18924.1.1 ID=prot_P-wetherbeei_contig18924.1.1|Name=mRNA_P-wetherbeei_contig18924.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
MGTSTAGNADPRFKAAMEHLATLSPEQIVALEEAAKASTPEEIAEQRAKL
VAALDGVNAAETDIGAAAIPTTDGDATTAGTDLPQSPPSPPALPSQPQAL
KQQQQQQRQQPGTVADAVVERARAGELHRAGDFAGAAAAFAAAAAALDGA
GGPIAARERAL
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mRNA from alignment at P-wetherbeei_contig18924:107..1046-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18924.1.1 ID=mRNA_P-wetherbeei_contig18924.1.1|Name=mRNA_P-wetherbeei_contig18924.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=940bp|location=Sequence derived from alignment at P-wetherbeei_contig18924:107..1046- (Phaeothamnion wetherbeei SAG_119_79)
TCAAAAATGCTTGGAGGAAGAAGAGGGATGGCTGCCGCGATGGTGGCGCT
GTCTCTCCTCGGAGGGAATCTAAGGACGTGCGCTGCGGTAAGCTTGTGTG
CCCGCGATGCATGGCGTTCCCGTGATCGCTTCGCAATACGTTCTGTCTGG
CTTTCGTTGGGGTGTAGATCGACAGGAATCTTTCAGCCTGTTTCGGAGCT
CGTATGGCGCTGCCGTCCGCACTCTGGGCTTGTGAAGCTGCGCGCTCTAC
GCTTAGAATTTAAGATGTTGCCAGTTTTTTTCGCTCTTTCCTTCTGAAAG
TTTCCTTTCCGCCTTGCCATGTTTCGCCTCCCAAAAGCCCCTCAACTGTA
ACGCGCGCGACTTGAAACGACGCGAAAACCTGGGCCTTCTGTGCCGCTAC
ACATAGGCGTCCGGCCCTGGGATCGATCCAAAGACGTTTCGCGAGCTCGC
CAAGTCAATGGGAACGAGCACCGCGGGCAACGCCGACCCGCGCTTCAAGG
CGGCAATGGAGCACCTCGCGACGCTATCGCCTGAGCAAATCGTGGCGCTC
GAGGAGGCTGCCAAGGCGTCCACGCCGGAGGAGATCGCCGAACAGCGCGC
CAAGCTTGTGGCCGCCCTCGACGGCGTCAACGCCGCAGAAACGGACATCG
GTGCCGCCGCCATCCCAACAACAGACGGCGATGCCACCACAGCAGGAACC
GACCTTCCGCAATCGCCGCCGTCGCCGCCGGCCTTGCCATCGCAGCCGCA
GGCGCTAAAGCAGCAGCAGCAGCAGCAACGACAGCAGCCCGGCACTGTGG
CGGATGCGGTGGTGGAGCGCGCACGGGCGGGGGAGCTGCACCGCGCCGGG
GACTTTGCGGGGGCCGCCGCCGCGTTCGCCGCCGCCGCCGCCGCCCTCGA
TGGCGCCGGCGGGCCGATCGCGGCACGGGAGCGGGCGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18924:107..1046-

>mRNA_P-wetherbeei_contig18924.1.1 ID=mRNA_P-wetherbeei_contig18924.1.1|Name=mRNA_P-wetherbeei_contig18924.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig18924:107..1046- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAACGAGCACCGCGGGCAACGCCGACCCGCGCTTCAAGGCGGCAAT
GGAGCACCTCGCGACGCTATCGCCTGAGCAAATCGTGGCGCTCGAGGAGG
CTGCCAAGGCGTCCACGCCGGAGGAGATCGCCGAACAGCGCGCCAAGCTT
GTGGCCGCCCTCGACGGCGTCAACGCCGCAGAAACGGACATCGGTGCCGC
CGCCATCCCAACAACAGACGGCGATGCCACCACAGCAGGAACCGACCTTC
CGCAATCGCCGCCGTCGCCGCCGGCCTTGCCATCGCAGCCGCAGGCGCTA
AAGCAGCAGCAGCAGCAGCAACGACAGCAGCCCGGCACTGTGGCGGATGC
GGTGGTGGAGCGCGCACGGGCGGGGGAGCTGCACCGCGCCGGGGACTTTG
CGGGGGCCGCCGCCGCGTTCGCCGCCGCCGCCGCCGCCCTCGATGGCGCC
GGCGGGCCGATCGCGGCACGGGAGCGGGCGCTG
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