mRNA_P-wetherbeei_contig1890.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1890.1.1
Unique NamemRNA_P-wetherbeei_contig1890.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1890.1.1 vs. uniprot
Match: D7G0B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B1_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 1.100e-68
Identity = 124/183 (67.76%), Postives = 140/183 (76.50%), Query Frame = 1
Query:    1 NPFARTFDAGRRLRETLDAALDQITGK----EGKKARSTGAQYERMLYSQFDSEDEIPEVLVVGATGETGRVVVRKLLLRGFRVRVLVRNLFSSTLDLLGTGVTYTQGDLTNRQSIVDAVSGVDKVIFCAQSRELTTADSAGPAAVSVEYEGFKNLVHAFQDARVADYGQPYSTKRTLFRFTR 537
            NPF + FDAG+ LR TL   L QITG     EG K RS   +YE+ LYS FDSE+E+P VLVVGATGE GRVVVRKLLLRGF VRVLVRNL+SSTLDLLGTG T+ QGDLTN +SIVDAVSGVDKVIFCAQ+R+   A+        VE+EG +NL+ AFQD RVA YG PYSTK+TLFRF R
Sbjct:   25 NPFKKAFDAGQNLRSTLADTLGQITGTASPLEGVKIRSL-EEYEKRLYSPFDSEEEVPTVLVVGATGEMGRVVVRKLLLRGFSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKVIFCAQARDPEQAEL-------VEFEGLRNLLAAFQDQRVALYGDPYSTKKTLFRFNR 199          
BLAST of mRNA_P-wetherbeei_contig1890.1.1 vs. uniprot
Match: A0A835ZGW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW1_9STRA)

HSP 1 Score: 224 bits (570), Expect = 3.740e-65
Identity = 128/205 (62.44%), Postives = 144/205 (70.24%), Query Frame = 1
Query:    1 NPFARTFDAGRRLRETLDAALDQITGKEGKKAR---STGAQYERMLYSQFDSEDEIPEVLVVGATGETGRVVVRKLLLRGFRVRVLVRNLFSSTLDLLGTGVTYTQGDLTNRQSIVDAVSGVDKVIFCAQSRELTTADSAGPAAVSVEYEGFKNLVHAFQDARVADYGQPY-----------------------STKRTLFRFTR 537
            NPF  TF+AGR LRETLD ALDQ TG +  KAR   +     ER LYSQFDS +E+PEVLVVGATGETGRVVVRKLLLRGF+VRVLVRNL+SSTLDLLGTGVTYTQGDL N  SIVDAVSGVDKV+F AQSR+ +  D        VE+ GFKNL+  FQD+RVADYG  +                       STKRTLF+F+R
Sbjct:  398 NPFLDTFNAGRSLRETLDEALDQFTGGKTSKARVGFADAEALERRLYSQFDSPEEVPEVLVVGATGETGRVVVRKLLLRGFKVRVLVRNLYSSTLDLLGTGVTYTQGDLGNAASIVDAVSGVDKVMFLAQSRDDSAQD--------VEFAGFKNLISTFQDSRVADYGTAFILTYPXXXXXXXXXXXXXXXXXXSTKRTLFKFSR 594          
BLAST of mRNA_P-wetherbeei_contig1890.1.1 vs. uniprot
Match: A0A2V3J7E6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7E6_9FLOR)

HSP 1 Score: 145 bits (365), Expect = 5.710e-38
Identity = 75/131 (57.25%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  139 FDSEDEIPEVLVVGATGETGRVVVRKLLLRGFRVRVLVRNLFSSTLDLLGTGVTYTQGDLTNRQSIVDAVSGVDKVIFCAQSRELTTADSAGPAAVSVEYEGFKNLVHAFQDARVADYGQPYSTKRTLFRF 531
            F+  D+ PEVLVVGATGETGR++VRKL+LRG+ VRVLVRNL+SSTLDLLGTGV++ +G L +  S+++A   VDKVI    +R L  A+        VEYEG  NL+ AF D+RV  YG+  +TKRTLF F
Sbjct:   51 FEDSDQPPEVLVVGATGETGRIIVRKLVLRGYNVRVLVRNLYSSTLDLLGTGVSFVKGSLDDYDSLLEATGDVDKVICAVGARNLEDAEL-------VEYEGVSNLIRAFHDSRVQYYGRSEATKRTLFNF 174          
BLAST of mRNA_P-wetherbeei_contig1890.1.1 vs. uniprot
Match: A0A4D9D9K4_9STRA (NmrA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9K4_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.490e-36
Identity = 82/178 (46.07%), Postives = 114/178 (64.04%), Query Frame = 1
Query:    1 NPFARTFDAGRRLRETLDAALDQITGKEGKKARSTGAQYER-MLYSQFDSEDEIPEVLVVGATGETGRVVVRKLLLRGFRVRVLVRNLFSSTLDLLGTGVTYTQGDLTNRQSIVDAVSGVDKVIFCAQSRELTTADSAGPAAVSVEYEGFKNLVHAFQDARVADYGQPYSTKRTLFRF 531
            NP      AGR  R  L++ L Q+     K        +++  +Y+     ++ P VLVVGATG+ GR VVRKL+L+G+RV+VLVRNL+S+TL+LLGTGV+Y +GDL++  S+  A  G DKV++ AQ+RE          A +VEY G +NL  AFQD RV+D G+  +TKRTLF+F
Sbjct:   92 NPIEIPIKAGRAARRALES-LGQVEEPAPKNPEDYRLYFDKKFMYAIPAPGEKTPTVLVVGATGDIGRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTGVSYVKGDLSDLSSLRTACDGADKVVYVAQARE-------DGDARTVEYLGLRNLAQAFQDTRVSDAGKRVATKRTLFKF 261          
BLAST of mRNA_P-wetherbeei_contig1890.1.1 vs. uniprot
Match: R7Q993_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q993_CHOCR)

HSP 1 Score: 139 bits (351), Expect = 2.940e-36
Identity = 71/131 (54.20%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  139 FDSEDEIPEVLVVGATGETGRVVVRKLLLRGFRVRVLVRNLFSSTLDLLGTGVTYTQGDLTNRQSIVDAVSGVDKVIFCAQSRELTTADSAGPAAVSVEYEGFKNLVHAFQDARVADYGQPYSTKRTLFRF 531
            F+ +D+ PEVLV GATGETGRV+VRKL+LRG+ VRVLVR+LFSSTLDLLGTGV++ +G L +  S+++A   VDKV+    SR +  A++       +EYEG  NL+ A+QD+RV  YG+  +TK  LF F
Sbjct:    3 FEEDDQPPEVLVAGATGETGRVIVRKLVLRGYNVRVLVRDLFSSTLDLLGTGVSFVKGSLDDYDSLLEATGDVDKVVCAVGSRSVEEAEA-------IEYEGVGNLIRAYQDSRVQYYGRAEATKLVLFNF 126          
BLAST of mRNA_P-wetherbeei_contig1890.1.1 vs. uniprot
Match: A0A7S2ZMD3_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZMD3_9RHOD)

HSP 1 Score: 139 bits (349), Expect = 5.750e-36
Identity = 73/130 (56.15%), Postives = 94/130 (72.31%), Query Frame = 1
Query:  148 EDEIPEVLVVGATGETGRVVVRKLLLRGFRVRVLVRNLFSSTLDLLGTGVTYTQGDLTNRQSIVDAVSGVDKVIFCAQSRELTTADSAGPAAVSVEYEGFKNLVHAFQDARVADYGQPYSTKRTLFRFTR 537
            E++ P VLVVGATGE GRV+VRKLLLRG++VRVLVRNLF+ TLDLLGTG +Y  GD+T+  ++++AVSGVDKV+   ++R  +           VE +G K LV AF D R ADYG+  +TK TLF+F R
Sbjct:   80 EEQPPVVLVVGATGEVGRVIVRKLLLRGYQVRVLVRNLFTETLDLLGTGCSYVMGDITDPYALMEAVSGVDKVVCSVKARSESEVRE-------VELDGLKKLVRAFHDVRHADYGRTEATKVTLFKFNR 202          
BLAST of mRNA_P-wetherbeei_contig1890.1.1 vs. uniprot
Match: A0A7S3EC31_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC31_9RHOD)

HSP 1 Score: 139 bits (349), Expect = 2.420e-35
Identity = 73/130 (56.15%), Postives = 94/130 (72.31%), Query Frame = 1
Query:  148 EDEIPEVLVVGATGETGRVVVRKLLLRGFRVRVLVRNLFSSTLDLLGTGVTYTQGDLTNRQSIVDAVSGVDKVIFCAQSRELTTADSAGPAAVSVEYEGFKNLVHAFQDARVADYGQPYSTKRTLFRFTR 537
            E++ P VLVVGATGE GRV+VRKLLLRG++VRVLVRNLF+ TLDLLGTG +Y  GD+T+  ++++AVSGVDKV+   ++R  +           VE +G K LV AF D R ADYG+  +TK TLF+F R
Sbjct:   80 EEQPPVVLVVGATGEVGRVIVRKLLLRGYQVRVLVRNLFTETLDLLGTGCSYVMGDITDPYALMEAVSGVDKVVCSVKARSESEVRE-------VELDGLKKLVRAFHDVRHADYGRTEATKVTLFKFNR 202          
BLAST of mRNA_P-wetherbeei_contig1890.1.1 vs. uniprot
Match: A0A1X6PIK3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIK3_PORUM)

HSP 1 Score: 135 bits (340), Expect = 6.940e-34
Identity = 74/134 (55.22%), Postives = 96/134 (71.64%), Query Frame = 1
Query:  160 PEVLVVGATGETGRVVVRKLLLRGFRVRVLVRNLFSSTLDLLGTGVTYTQGDLTNRQSIVDAVSGVDKVIFCAQSRELTTADSAGPAA--------VSVEYEGFKNLVHAFQDARVADYGQPYSTKRTLFRFTR 537
            PEVLVVGATGETGR++VRKL+LRGFRVRVLVR+LF+ TLD LGTGV++ +GDL +  +++DAVSGVDK++    +R+ T A +AG  A          VEY G   LV AF D+R   YG+  ++K TLF+F R
Sbjct:  125 PEVLVVGATGETGRIIVRKLVLRGFRVRVLVRDLFTKTLDTLGTGVSFVKGDLRDADTLLDAVSGVDKIVCAINARD-TEAPAAGADAQGDGDIGYADVEYGGVARLVRAFHDSRHQMYGKAEASKVTLFQFGR 257          
BLAST of mRNA_P-wetherbeei_contig1890.1.1 vs. uniprot
Match: K0T6P0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T6P0_THAOC)

HSP 1 Score: 134 bits (338), Expect = 2.290e-33
Identity = 84/191 (43.98%), Postives = 117/191 (61.26%), Query Frame = 1
Query:   19 FDAGRRLRETLDAALDQIT-GKEGKKARSTGAQYERMLYSQ-------FDS-------EDEIPEVLVVGATGETGRVVVRKLLLRG-FRVRVLVRNLFSSTLDLLGTGVTYTQGDLTNRQSIVDAVSGVDKVIFCAQSRELTTADSAGPA--AVSVEYEGFKNLVHAFQDARVADYGQPYSTKRTLFRFTR 537
            F+AG+  R T+ +ALD I  G  G  +R    +    L  Q       FD        ED  PEVLVVGA+GE GR +V++LL+ G  RVRV VR+LFSSTL+ LGTGVTY QGDL + +S+  AV+ VDK++FCA  +    ++ +  A  A +++ +G +NL+HA+ + R ADYG   + KR LF+F R
Sbjct:  146 FNAGKSFRSTVGSALDFIQYGVPGSVSRLPPERRSIYLDDQLGLGDPYFDQSGVTSQDEDYRPEVLVVGASGELGRTLVKRLLVEGRVRVRVFVRDLFSSTLNKLGTGVTYCQGDLKDIESLEYAVTDVDKIVFCASGKRTVDSEESERAEQARAIDSDGLRNLIHAYCNVRFADYGNSQAAKRLLFKFKR 336          
BLAST of mRNA_P-wetherbeei_contig1890.1.1 vs. uniprot
Match: A0A5J4Z1C0_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z1C0_PORPP)

HSP 1 Score: 132 bits (333), Expect = 5.100e-33
Identity = 86/172 (50.00%), Postives = 108/172 (62.79%), Query Frame = 1
Query:   43 ETLDAALDQITGKEGKKARSTGAQ---YE-RMLYSQFDSEDEIPEVLVVGATGETGRVVVRKLLLRGFRVRVLVRNLFSSTLDLLGTGVTYTQGDLTNRQSIVD---AVSGVDKVIFCAQSRELTTADSAGPAAVSVEYEGFKNLVHAFQDARVADYGQPYSTKRTLFRFTR 537
            E +  A+D I G  G + RS       Y+     S+FD+E+E P VLVVGATG  GRVVVRKLLLRGF+VRV+VRNLFSSTLDLL + V + +GD+  R SI +   A+SGVDKVI    +R              VE +G +NLV AF D RV ++G   STK TLF+F+R
Sbjct:   74 ENVQDAIDGIRGLLGLQRRSRTQSLLDYDPSSAQSEFDNEEEAPLVLVVGATGRVGRVVVRKLLLRGFKVRVMVRNLFSSTLDLLPSSVEFVKGDV--RDSIFELQEALSGVDKVICLVGARSEDEMQE-------VEVQGLQNLVQAFHDIRVQEFGPEESTKITLFKFSR 236          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1890.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0B1_ECTSI1.100e-6867.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZGW1_9STRA3.740e-6562.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2V3J7E6_9FLOR5.710e-3857.25Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A4D9D9K4_9STRA2.490e-3646.07NmrA domain-containing protein n=2 Tax=Monodopsida... [more]
R7Q993_CHOCR2.940e-3654.20Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2ZMD3_9RHOD5.750e-3656.15Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S3EC31_9RHOD2.420e-3556.15Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1X6PIK3_PORUM6.940e-3455.22Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
K0T6P0_THAOC2.290e-3343.98Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A5J4Z1C0_PORPP5.100e-3350.00Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1890contigP-wetherbeei_contig1890:3..2191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0B1
PFAMsCIA30,NAD_binding_10
Model size537
Max annot lvl2759|Eukaryota
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.81e-69
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
EC2.3.1.48
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
Cds size537
COG categoryGM
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186158.4275765-CDS-P-wetherbeei_contig1890:2..1761683186158.4275765-CDS-P-wetherbeei_contig1890:2..176Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1890 3..176 -
1683186158.440484-CDS-P-wetherbeei_contig1890:672..7811683186158.440484-CDS-P-wetherbeei_contig1890:672..781Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1890 673..781 -
1683186158.4503822-CDS-P-wetherbeei_contig1890:1225..13411683186158.4503822-CDS-P-wetherbeei_contig1890:1225..1341Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1890 1226..1341 -
1683186158.4604836-CDS-P-wetherbeei_contig1890:1818..18451683186158.4604836-CDS-P-wetherbeei_contig1890:1818..1845Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1890 1819..1845 -
1683186158.4708157-CDS-P-wetherbeei_contig1890:2080..21911683186158.4708157-CDS-P-wetherbeei_contig1890:2080..2191Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1890 2081..2191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1890.1.1prot_P-wetherbeei_contig1890.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1890 3..2191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1890.1.1

>prot_P-wetherbeei_contig1890.1.1 ID=prot_P-wetherbeei_contig1890.1.1|Name=mRNA_P-wetherbeei_contig1890.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
NPFARTFDAGRRLRETLDAALDQITGKEGKKARSTGAQYERMLYSQFDSE
DEIPEVLVVGATGETGRVVVRKLLLRGFRVRVLVRNLFSSTLDLLGTGVT
YTQGDLTNRQSIVDAVSGVDKVIFCAQSRELTTADSAGPAAVSVEYEGFK
NLVHAFQDARVADYGQPYSTKRTLFRFTR
back to top

mRNA from alignment at P-wetherbeei_contig1890:3..2191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1890.1.1 ID=mRNA_P-wetherbeei_contig1890.1.1|Name=mRNA_P-wetherbeei_contig1890.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2189bp|location=Sequence derived from alignment at P-wetherbeei_contig1890:3..2191- (Phaeothamnion wetherbeei SAG_119_79)
AACCCATTCGCCAGGACATTCGACGCGGGGCGCCGGTTACGGGAGACTCT CGATGCTGCGCTGGACCAAATTACGGGGAAGGAAGGGAAAAAGGCAAGAT CTACGGGCGCGGTTTTCTGTCGCTCTGTGTAGCTTATTGGTTAGTTTGGC TATCATATGGAAATACTTTCACTTGGTGCCGCCGCTCGCTGTGTTTGATT TTTACCTATGACATTGGTAAACCGCAACACGCAAAAACGTTCGTGGACTC TGCTTCGGAAGGACACCTTTCTTCGGTGCTTAAAATTTGCTCGATCTTCT CGTTCTTTTCTCGTGACAGGGGCGCTTGTCAGCGGCGGATGTGGAGCAAT ACGAACGCATGCTCTACAGTCAGGTGAATTAGCTGTTGACTTGACTATTG AGTTTCAAAGGGAGAAATTCTGTTGCAAAGGAAAGCATCTACTAGAAAGG GCAACCTTCTCTTTTGCGGATGCAAAGCGATTGGCTCACCTCACCAAGAG CGGCAGAATTTTTGGCAGGAGGCCTGAGGTTGGGATGGCAAAAAGACGCT TATTTGGTCAGATTCCACATCTGAATCCTCCGACACAGCGCGATGGCGGA AGAACCTTTCTTTCCTCACCAACACGCTCCGTTCCTGCTTTTCGCTTGCT TGTCTGCCACACCCTTTCCCGCCGCTTTTCCCTGGCTTCGGTTCTTCCGC GGTTACCCTCCTGTCTGCTTGCTTCCCGCACTGCCTACTGCACGTCGGTC CGAACCGCGTGACTACCCGCCTAAAATCGCCTGGTCCTTGGGCAATCTGT CGGTTACATGTCGGTTACGCCGGTCGGTTACGTTCCGGTTACGACACCAG TTTGACTCGGAGGACGAGATCCCTGAGGTGTTGGTGGTAGGCGCCACGGG GGAGACGGGGCGGGTGGTGGTACGGAAGCTTCTCCTAAGGGGGTTCCGGG TGCGCGTCCTCGTCAGGTCTGTTTATCCCTTCGTGATCCTGTCTTATCCG CTCCGGTTTGTATCGCGTTATCACGCCACTGGGCACCAAGCGTCCGTTTC TTCGATGCCATGTTTCCCTTTTTCCCGCCTTTTCCCATTCCTGCCCCCTC TGTTTTCCTCTTGCCCTTCGGCGTGCTTCCGAGTTTTAGTTTGCACGGGC AGTGTATGTACCCTCTGGCGATGTCGTAGCCTCGTCGTGCGGTTATTGGG ACTGTTGCTGCCTTGGCGGCTCCTTCTAGAGTGCGTCTTGCCTCTTTATA CGGTTCTTTTTTCTGCTGGCCTTTCGTGTCCTTAATTCTTGCTCCTCCTT CGGCGGCGACGGCGACGGCGATGGCGACTGGCGATGGCGATGGTGACTGG CGATGGCGATGGCGACTGGCAACGGCTGTGGCGACTGGCAACGGCTGTGG CGGCTGGCAGGAATCTGTTCTCGTCAACGCTGGATCTGTTGGGGACGGGC GTAACGTACACGCAGGGCGACCTGACCAATCGCCAATCCATCGTCGACGC CGTTTCCGGAGTCGACAAGGTGCGCCGGCGGTGCACGTGGTTTGGTTGAG AAGAAGGCGTGGCTTACTTATCTCTTAATAGGAATGGTACAGCAGAATGT TGGAGGTTTTTCCAAAGCTGCTATGTGTTAAATCTTCTGTCTCCGTTTTC AAAGCTGAGCACGCGTGTAGCTTTGTTGGGGCCGGTCGCATCCGGCTGAA AGGTCTGGTCAAATTGCTGCAGTGTCATATTTGCCCCAACCGTTCATAAG CGGTCGAAAGCTGTTCAACCCGGGCTGCAAAGTCTTCTGCATGATACTTT TACTCAGCGGACGAGCTTGTTTCGGTTCATCGATTTCGGCCTTCCGCCCG CCTGCACATCTCGCCCCAGAGATCGCTGCGGACGCCACCGGCACCTTCGC TTCCCTTAGCCGCTTCGCATTGCCATCCCTTCGTCGTCCTCCGTCCCTCC GTCTCACACTCTCTCTCCGTTTCTCTCTCTTTCTCCTCGTTCCTCTCTCC CTTCCCTGTCATCAGGTTATCTTCTGCGCGCAATCGAGGGAGCTGACAAC GGCGGACTCGGCGGGCCCCGCGGCGGTGTCGGTGGAGTACGAAGGGTTCA AGAACCTCGTGCACGCCTTTCAGGACGCCCGCGTTGCCGACTATGGCCAG CCCTACTCCACTAAGCGAACCCTCTTCCGCTTCACGCGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1890:3..2191-

>mRNA_P-wetherbeei_contig1890.1.1 ID=mRNA_P-wetherbeei_contig1890.1.1|Name=mRNA_P-wetherbeei_contig1890.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig1890:3..2191- (Phaeothamnion wetherbeei SAG_119_79)
AACCCATTCGCCAGGACATTCGACGCGGGGCGCCGGTTACGGGAGACTCT
CGATGCTGCGCTGGACCAAATTACGGGGAAGGAAGGGAAAAAGGCAAGAT
CTACGGGCGCGCAATACGAACGCATGCTCTACAGTCAGTTTGACTCGGAG
GACGAGATCCCTGAGGTGTTGGTGGTAGGCGCCACGGGGGAGACGGGGCG
GGTGGTGGTACGGAAGCTTCTCCTAAGGGGGTTCCGGGTGCGCGTCCTCG
TCAGGAATCTGTTCTCGTCAACGCTGGATCTGTTGGGGACGGGCGTAACG
TACACGCAGGGCGACCTGACCAATCGCCAATCCATCGTCGACGCCGTTTC
CGGAGTCGACAAGGTTATCTTCTGCGCGCAATCGAGGGAGCTGACAACGG
CGGACTCGGCGGGCCCCGCGGCGGTGTCGGTGGAGTACGAAGGGTTCAAG
AACCTCGTGCACGCCTTTCAGGACGCCCGCGTTGCCGACTATGGCCAGCC
CTACTCCACTAAGCGAACCCTCTTCCGCTTCACGCGC
back to top