mRNA_P-wetherbeei_contig187.3.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig187.3.4
Unique NamemRNA_P-wetherbeei_contig187.3.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig187.3.4 vs. uniprot
Match: A0A8J2SDB2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDB2_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.050e-32
Identity = 115/366 (31.42%), Postives = 159/366 (43.44%), Query Frame = 1
Query:  184 LETSQQQLAQIDGLLAQSPGDAQLLGLRADVVEAMTLSQEILEAFGAQGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPVHEASVSDDIFGVGSRVEVLSGVQWLPAWITAPSPDGGFVVRLYGSGTKEQKVSLSSIRRLVPQPYGFQSGVVTAGQACQAVFREDGQFYEAVVTEVTAYGYRVTFTGYGNSEEVPLEYLRRGGSADAVGGTAAGAAAAAXTXXXXXXXXXXXXXXGRGTSGELPPVPAAALDE-DGNFKIPDNLKPHPGDTXXXXXXXXXXXXXXXXXVRLRQKDEETTHKQSSWQAFASGKGASKPAKGSLKGLRKESIFRSPDAPDGRVGVTGSGQGMTGFEGRKKLK 1278
            L T  +QLAQ++ LLAQ P + Q   LR D++E   L++++L+                                            +  +  D F VG R E      W PA ITA +  G + V   G G  E  V    IR L+          V  G      +  DG++Y+ VV  VT +GY+V+FT YGNSEE+PLEYLR                                    R  +G+LP      + E DG ++IP++LK  P D+                 ++  ++D      ++SWQAF   KGA +   GS+KG+RKESIF +P   DG+VGVTGSG+ MT F GRKK K
Sbjct:  485 LRTYGEQLAQVEQLLAQDPDNEQFKKLRQDLLEVTKLTEDLLK--------------------------YDHEKKEQEQPDATQGEEQEGIDIDPFQVGMRCEGKFNDGWYPAVITAVA-GGAYTVVYIGFGNTEV-VDADGIRPLICDD-PLDPAQVVVGAELVGRYSGDGKYYDVVVEAVTDFGYKVSFTEYGNSEELPLEYLRV-----------------------------------RSQTGQLPDANEGLVREADGTYRIPEHLKVLPSDSEQDRLRKRRRVKALKQKLKQSEQDAARDQSKNSWQAFQQ-KGAKRRVAGSMKGVRKESIFAAPTTVDGKVGVTGSGRDMTEFGGRKKFK 785          
BLAST of mRNA_P-wetherbeei_contig187.3.4 vs. uniprot
Match: A0A6H5JFR7_9PHAE (Tudor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR7_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.210e-32
Identity = 104/296 (35.14%), Postives = 139/296 (46.96%), Query Frame = 1
Query:  433 LPVHEASVSDDIFGVGSRVEVLSGVQWLPAWITAPSPDG-GFVVRLYGSGTKEQKVSLSSIRRLVPQPYGFQSGVVTAGQACQAVFREDGQFYEAVVTEVTAYGYRVTFTGYGNSEEVPLEYL----------RRGGSADAVGGTAAGAAAAAXTXXXXXXXXXXXXXXGRGTSGELPPVPAAALDEDGNFKIPDNLKPHPGDTXXXXXXXXXXXXXXXXXVRLRQKDEETTHKQSSWQAFASGKGASKPAKGSLKG--LRKESIFRSPDAPDGRVGVTGSGQGMTGFEGRKKLKT 1281
            L   + S +  +FGVG+RVEVLS  +W PA I + S DG  F V   G GT E   +++++R++   P    +     G  C+A++  DG +Y+  + EVTA GY++ F  YGN EEVPLEYL          RR  S   V     G A                      T G L     +   E    ++P   K                         ++QKD    +KQ+SWQAF + KGA K  KGS+    L+KESIF SP   +G+VGVTGSGQG+T    RKK KT
Sbjct:  111 LAAKQGSSTTGVFGVGARVEVLSADKWYPAVIDSVSEDGQDFGVTYMGYGT-EGTATITTLRQITRSPRPVAAAAAVKGLECRALYVGDGTYYDCTIQEVTANGYKIVFPAYGNVEEVPLEYLQKKVTMSLAKRRRRSRQQVSRAVTGEAGRGAGRSRRVFRHPGEPSV---TRGRLRGGAGSKTQEGQGAEVPGRFK-------------------------IKQKDAVVNNKQASWQAFQT-KGAKKKTKGSMAAVSLKKESIFASPAGLEGKVGVTGSGQGITEQATRKKHKT 376          
BLAST of mRNA_P-wetherbeei_contig187.3.4 vs. uniprot
Match: A0A835YIB2_9STRA (Tudor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIB2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.050e-28
Identity = 79/210 (37.62%), Postives = 106/210 (50.48%), Query Frame = 1
Query:  655 VTAGQACQAVFREDGQFYEAVVTEVTAYGYRVTFTGYGNSEEVPLEYLRRGGSADAVGGTAAGAAAAAXTXXXXXXXXXXXXXXGRGTSGELPPVPAAA--LDEDGNFKIPDNLKPHPGDTXXXXXXXXXXXXXXXXXVRLRQKDEETTHKQSSWQAFASGKGASKPAKGSLKGLRKESIFRSPDAPDGRVGVTGSGQGMTGFEGRKKLK 1278
            V  G  C+ ++  D Q+Y+ V+   T +GY+V FT YGN EE+PLEYL++                                           P  AAA    EDG FKIPDNL+    DT                  + +  ++ET  KQSSW+AFA  KG  + A GS+KG+RKESIF+SPD+ DG+VGV GSGQGMT F+ +K+ +
Sbjct:   95 VKRGFKCRGLYLGDMQWYDCVIESKTEHGYKVLFTQYGNREELPLEYLQQ------------------------------------------KPADAAADPSGEDGTFKIPDNLRLQSTDTDADKVRKRNKVKALKMLYKQQLVEQETDKKQSSWKAFAISKGTKRVA-GSMKGVRKESIFKSPDSLDGKVGVVGSGQGMTDFDNKKRTR 261          
BLAST of mRNA_P-wetherbeei_contig187.3.4 vs. uniprot
Match: D7G130_ECTSI (Tudor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G130_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 8.300e-28
Identity = 111/280 (39.64%), Postives = 144/280 (51.43%), Query Frame = 1
Query:  451 SVSDDIFGVGSRVEVLSGVQWLPAWITAPSPDG-GFVVRLYGSGTKEQKVSLSSIRRLVPQPYGFQSGVVTAGQACQAVFREDGQFYEAVVTEVTAYGYRVTFTGYGNSEEVPLEYLRRGGSADAVGGTAAGAAAAAXTXXXXXXXXXXXXXXGRGTSGELPPVPAAALDEDGNFKIPDNLKPHPGDTXXXXXXXXXXXXXXXXXVRLRQKDEETTHKQSSWQAFASGKGASKPAKGSLKG--LRKESIFRSPDAPDGRVGVTGSGQGMTGFEGRKKLKT 1281
            S +  +FGVG+RVEVLS  +W PA I + S DG  F V   G GT E   +++++R++   P    +     G  C+A++  DG +Y+  + EVTA GY++ F  YGN EEVPLEYL++  +               X XXXXXXXXXXXXXX             A     G FKI                               +QKD    +KQ+SWQAF + KGA K  KGS+    L+KESIF SP   +G+VGVTGSGQG+T    RKK KT
Sbjct:  117 SSTTGVFGVGARVEVLSADKWYPAVIDSVSEDGQDFGVTYMGYGT-EGTATITTLRQITRSPRPVAAAAAVKGLECRALYVGDGTYYDCTIQEVTANGYKIVFPAYGNVEEVPLEYLQKKVTMSLAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKALK---GRFKI-------------------------------KQKDAVVNNKQASWQAFQT-KGAKKKTKGSMAAVSLKKESIFASPAGLEGKVGVTGSGQGITEQVARKKHKT 360          
BLAST of mRNA_P-wetherbeei_contig187.3.4 vs. uniprot
Match: A0A5D6XGX8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGX8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.300e-26
Identity = 135/385 (35.06%), Postives = 182/385 (47.27%), Query Frame = 1
Query:  166 EEARLSLETSQQQLAQIDGLLAQSPGDAQLLGLRADVVEAMTLSQEILEAFGAQGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPVHEASVSDDI----FGVGSRVEVLSGVQWLPAWITAPSPDGGFVVRLYGSGTKEQKVSLSSIRRLVPQPYGFQSGV------VTAGQACQAVFREDGQFYEAVVTEVTAYGYRVTFTGYGNSEEVPLEYLRRGGSADAVGGTAAGAAAAAXTXXXXXXXXXXXXXXGRGTSGELPPVPAAALDEDGNFKIPDNLKPHPGDTXXXXXXXXXXXXXXXXXVRLRQKDEETTHKQSSWQAFASGKGASKPAKGSLKGLRKES--IFRSPDAPDGRVGVTGSGQGMTGF-EGRKKLKT 1281
            EE +  L    +QL  I  LL   P + + LG+  D+VE + L++E+++   + G                                      EA+  D      F  G+  E LS   W PA+I + +    + V   G G+K   +  + +R + P P+   +G       V  G  C+A +  DGQFY   VT VTA+G++V F+GYGNSEEVP EYLR      A G TAAGA        XXXXXXXXXXXX                      KIP++L+  PGD+  XXXXXXXX        R +  + E   KQS WQ+F   K   +  +G+   L K+S  +F  P+   GRVGV GSGQGMT + +GRKKLKT
Sbjct:    8 EELQTRLRAFSEQLESIHELLESDPANDEFLGIARDLVEVIRLTKEMIDLKLSGGAADERPAQQTG---------------------------EAAAIDATIELRFSPGTICEALSKGVWYPAFIESMTAGNAYNVHFLGFGSKGA-LPEAELRAVPPVPHIPLAGALPPRHAVAVGFQCEAKYFADGQFYACAVTAVTAHGFQVLFSGYGNSEEVPYEYLRA--LPPATGATAAGADTNTDAKAXXXXXXXXXXXXXXXXXXXXXXXXXVVAKP---IKIPESLQILPGDSEAXXXXXXXXQRAIKSLNRHKTIENERNAKQSGWQSFQH-KAQKRRVQGATGVLSKKSTSMFAVPEGVGGRVGVVGSGQGMTAYHDGRKKLKT 358          
BLAST of mRNA_P-wetherbeei_contig187.3.4 vs. uniprot
Match: K3WJ62_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJ62_GLOUD)

HSP 1 Score: 120 bits (302), Expect = 1.720e-26
Identity = 140/382 (36.65%), Postives = 185/382 (48.43%), Query Frame = 1
Query:  166 EEARLSLETSQQQLAQIDGLLAQSPGDAQLLGLRADVVEAMTLSQEILEAFGAQGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPVHEASVSDDIFGVGSRVEVLSGVQWLPAWITAPSPDGGFVVRLYGSGTKEQKVSLSSIRRLVPQPYGFQSGVVTAGQA------CQAVFREDGQFYEAVVTEVTAYGYRVTFTGYGNSEEVPLEYLRRGGSADAVGG--TAAGAAAAAXTXXXXXXXXXXXXXXGRGTSGELPPVPAAALDEDGNFKIPDNLKPHPGDTXXXXXXXXXXXXXXXXXVRLRQKDEETTHKQSSWQAFASGKGASKPAKGSLKGLRKE--SIFRSPDAPDGRVGVTGSGQGMTGFE-GRKKLK 1278
            +E +  LET  QQL  I  LL   P + + LG+  D+VE + L++E+++                                          + E S+ D  F  G+  E  S   W PA+I + +    + V   G G K++ V  +++R +        SG + A +A      C+A +  D QFY   VTEVT YG+RV F GYGNSEEVP EYLR      A+ G  T + A    X XXXXXXXXXXXXXX      ++P  P  A  E    KIP+NL+  P D+    XXXXX         R +  D E   KQ++W++F       K AKG+   L K   SIF SP+  DGRVGV GSGQGMT F+  RKKLK
Sbjct:   11 DELQTRLETFTQQLESIHELLQSDPQNDEFLGIAQDLVEVIRLTKEMIDV----------------KLTNTEQQLKTQQPPPSDSAKEPNDMFEGSL-DLKFSPGTICEAQSKGVWYPAYIESVTSANTYHVHYLGFGNKDE-VHETALREVA-----LSSGQLPAKEAIKVGFQCEAKYYVDSQFYTCSVTEVTPYGFRVLFDGYGNSEEVPYEYLR---PLTAIAGSTTTSTAXXXXXXXXXXXXXXXXXXXXXXXXXKKVPAKPFVAPIEK-PIKIPENLQILPTDSEAEKXXXXXRLRAIKSLNRHKTIDNERNMKQNAWKSFQHN-AIKKKAKGTSGVLSKRGTSIFASPETVDGRVGVVGSGQGMTAFQDARKKLK 364          
BLAST of mRNA_P-wetherbeei_contig187.3.4 vs. uniprot
Match: A0A8K1C327_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C327_PYTOL)

HSP 1 Score: 120 bits (300), Expect = 2.550e-26
Identity = 120/375 (32.00%), Postives = 175/375 (46.67%), Query Frame = 1
Query:  166 EEARLSLETSQQQLAQIDGLLAQSPGDAQLLGLRADVVEAMTLSQEILEA-FGAQGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPVHEASVSDDIFGVGSRVEVLSGVQWLPAWITAPSPDGGFVVRLYGSGTKEQKVSLSSIRRLVPQPYGF--QSGVVTAGQACQAVFREDGQFYEAVVTEVTAYGYRVTFTGYGNSEEVPLEYLRRGGSADAVGGTAAGAAAAAXTXXXXXXXXXXXXXXGRGTSGELPPVPAAALDEDGNFKIPDNLKPHPGDTXXXXXXXXXXXXXXXXXVRLRQKDEETTHKQSSWQAFASGKGASKPAKGSLKGLRKESIFRSPDAPDGRVGVTGSGQGMTGFEG-RKKLK 1278
            EE    L T  +QL  I  LL   P +A+ L +  D+VE + L++E+++     +  G           XXXXXXXXXXXXX         P             GS  E LS   W PA I + + +  + V+  G G +++ +  SS+R +  +          +T G  C+A +  DGQ+Y A VT +T YG++V F GYGNSEEVP EY R   ++     TA+   A + T                  +  +P +P+         K+P+NL+  P D+        XX        ++++ + E   KQ  W++F + K   K  KGS    ++ S+F SPD   GRVGV GSG GMT +E  RKK K
Sbjct:    7 EELHKRLATFTEQLESIHTLLQTDPENAEFLNIAQDLVEVIRLTKEMIDLKLNTKSTGGNNAVVTSGRAXXXXXXXXXXXXXSKEPVLGFAP-------------GSNCEALSQNTWFPAHIESITANNTYKVQYLGFGNQDE-LPASSLRAIEQEGAELLPPKDEITVGFKCRAKYYVDGQYYTAAVTALTTYGFQVLFDGYGNSEEVPYEYFRPLPASSDASTTASAPVAVSSTK-----------------TAAVPALPSREAVIAKPIKVPENLQILPTDSEAEKERKRXXLKHINKLNKVKEIENERNIKQHDWRSFQN-KAMKKGVKGSGVLSKRGSMFASPDTVQGRVGVVGSGHGMTAYEDTRKKAK 349          
BLAST of mRNA_P-wetherbeei_contig187.3.4 vs. uniprot
Match: A0A2D4CIW9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIW9_PYTIN)

HSP 1 Score: 118 bits (295), Expect = 2.560e-26
Identity = 101/273 (37.00%), Postives = 134/273 (49.08%), Query Frame = 1
Query:  469 FGVGSRVEVLSGVQWLPAWITAPSPDGGFVVRLYGSGTKEQKVSLSSIRRLVPQPYGF--QSGVVTAGQACQAVFREDGQFYEAVVTEVTAYGYRVTFTGYGNSEEVPLEYLRRGGSADAVGGTAAGAAAAAXTXXXXXXXXXXXXXXGRGTSGELPPVPAAALDEDGNFKIPDNLKPHPGDTXXXXXXXXXXXXXXXXXVRLRQKDEETTHKQSSWQAFASGKGASKPAKGSLKGLRKESIFRSPDAPDGRVGVTGSGQGMTGFEG-RKKLK 1278
            F  G+  E  S   W PA+I + +    + V   G G K++ +S +S+R +   P     +S VV  G  C A +  D Q+Y A VT +TAYG +V F GYGN+EEVP EYLR   SAD      A  AAA  T                G    L P+ A         K+P+NL   P D+     XXXX         +L++ + E T KQ  W++F   K   K  +GS    ++ S+F SPD   GRVGV GSGQGMT F+  RKK+K
Sbjct:    8 FSPGTTCEAQSNGTWYPAFIESITARNTYNVHYLGFGNKDE-LSETSLRAIEHSPEQLPPRSDVVI-GYLCVAKYYVDSQWYTATVTAITAYGVQVLFDGYGNTEEVPFEYLRVRSSADV-----ATPAAAPSTTTATLESNKPAKAAVTG----LKPLEAVLAKP---IKVPENLHILPTDSEAEREXXXXRLKHIQKLNKLKEAENERTIKQHDWKSFQH-KAMKKGVRGSGVLSKRGSMFASPDTVQGRVGVVGSGQGMTAFDDVRKKVK 265          
BLAST of mRNA_P-wetherbeei_contig187.3.4 vs. uniprot
Match: A0A662Y7T4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y7T4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 6.160e-25
Identity = 120/381 (31.50%), Postives = 160/381 (41.99%), Query Frame = 1
Query:  166 EEARLSLETSQQQLAQIDGLLAQSPGDAQLLGLRADVVEAMTLSQEILEAFGAQGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPVHEASVSDDIFGVGSRVEVLSGVQWLPAWITAPSPDGGFVVRLYGSGTKEQKVSLSSIRRLVPQPYGFQ----SGVVTAGQACQAVFREDGQFYEAVVTEVTAYGYRVTFTGYGNSEEVPLEYLRRGGSADAVGGTAAGAAAAAXTXXXXXXXXXXXXXXGRGTSGELPPVPAAALDEDGNFKIPDNLKPHPGDTXXXXXXXXXXXXXXXXXVRLRQKDEETTHKQSSWQAF---ASGKGASKPAKGSLKGLRKESIFRSPDAPDGRVGVTGSGQGMTGFEGRKKLKTDL 1287
            EE +  L T  +QL  I  L+   P +A+ LG+  D+VE + L+QE++ A G  G                                  + +  A         GS  E LS   W PA + + + D  + V   G GT  + +  +S+R +     G         +  G ACQA +  D Q Y   VT+VT++G++V F GYGNSEEVP EYLR    +    GT      A                    T+  L P   A        KIP+NL+  P D+    XXXXXX        R +  D E   KQ  W+AF   A  K  +K   G L   R  S+F SPD   GRVGV GSGQGMT F+  +  K  L
Sbjct:    9 EELQTRLVTFTEQLENIHELMQGDPNNAEFLGIAKDLVEVIRLTQEMV-ALGVVG----------------------------VPHLCVVALILALYCYVAVAPGSACEALSQGVWYPAHVESVTSDDLYKVHFLGFGTVAE-LPAASLRAIDLAVEGAALLPPKHEIAEGFACQAKYYADSQMYPCTVTKVTSWGFQVLFGGYGNSEEVPYEYLRPSPPSSTASGTVQTQVVAEGLPPRTSSVAK--------TADALAPAAIAKP-----IKIPENLQILPTDSEAEKXXXXXXVRAIKSLNRHKNIDNERNVKQHDWKAFQHKAKKKKLTKGVSGVLS-KRGSSMFASPDTVQGRVGVVGSGQGMTAFQDARNKKPKL 345          
BLAST of mRNA_P-wetherbeei_contig187.3.4 vs. uniprot
Match: A0A329SYG5_9STRA (Tudor domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SYG5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.340e-24
Identity = 118/380 (31.05%), Postives = 163/380 (42.89%), Query Frame = 1
Query:  166 EEARLSLETSQQQLAQIDGLLAQSPGDAQLLGLRADVVEAMTLSQEILEAFGAQGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPVHEASVSDDI-FGVGSRVEVLSGVQWLPAWITAPSPDGGFVVRLYGSGT----KEQKVSLSSIRRLVPQPYGFQSGVVTAGQACQAVFREDGQFYEAVVTEVTAYGYRVTFTGYGNSEEVPLEYLRRGGSADAVGGTAAGAAAAAXTXXXXXXXXXXXXXXGRGTSGELPPVPAAALDEDGNFKIPDNLKPHPGDTXXXXXXXXXXXXXXXXXVRLRQKDEETTHKQSSWQAF---ASGKGASKPAKGSLKGLRKESIFRSPDAPDGRVGVTGSGQGMTGFEGRKKLKT 1281
            EE    L T  +QL  I  LL   P +A+ L +  D+VE + L++E ++      +                                    H+ +++ ++ +  GS VE L    W PA++ + + DG + V+  G GT    KE  + +  + +           +   G  CQA +  D   Y   VT+VT  G++V F GYGNSEEVP EYLR         GTA    +                  G  T+ ++ PV           KIP+NL+  P DT XXXXXXXXX        R +  D E   KQ  W+AF   A  KG  K   G L   R  S+F SPD   GRVGV GSGQGMT F+  +  K+
Sbjct:    8 EELEARLVTFTEQLQNIHELLQSDPTNAEFLSIAKDLVEVIQLTKETIDLKVNAASSVQVPESQKPQEQ-----------------------HQEALNLELNYEPGSVVEALQQGVWYPAYVDSVTSDGSYNVKFLGFGTTAELKEDALRVIEVDKEQAAELPATEAI-GEGFKCQAKYYLDAVVYPCSVTKVTELGFQVLFEGYGNSEEVPYEYLRPAAPLQTEVGTATAQTSTTNAVGGATALA------GAATAPKVAPVVIHKA-----IKIPENLQILPTDTEXXXXXXXXXVRAIKSLNRHKTIDNERNIKQHDWKAFQHNAKKKGLKKGVSGVLS-KRGSSMFASPDTVQGRVGVVGSGQGMTNFQDTRTKKS 351          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig187.3.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2SDB2_9STRA1.050e-3231.42Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6H5JFR7_9PHAE2.210e-3235.14Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YIB2_9STRA1.050e-2837.62Tudor domain-containing protein n=1 Tax=Tribonema ... [more]
D7G130_ECTSI8.300e-2839.64Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A5D6XGX8_9STRA1.300e-2635.06Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WJ62_GLOUD1.720e-2636.65Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1C327_PYTOL2.550e-2632.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CIW9_PYTIN2.560e-2637.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A662Y7T4_9STRA6.160e-2531.50Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A329SYG5_9STRA3.340e-2431.05Tudor domain-containing protein n=1 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig187contigP-wetherbeei_contig187:6011..8175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G130
Preferred nameSMNDC1
PFAMsSMN
Model size1520
Max annot lvl2759|Eukaryota
KEGG koko:K07179,ko:K10410,ko:K12839
KEGG Pathwayko03008,ko03040,ko05016,map03008,map03040,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0009987,GO:0010467,GO:0012501,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0065003,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons3
Evalue1.46e-29
EggNOG OGsKOG3026@1|root,KOG3026@2759|Eukaryota
EC2.7.11.1
DescriptionRNA splicing
Cds size1137
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03041,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.1301794-UTR-P-wetherbeei_contig187:6010..62401683186153.1301794-UTR-P-wetherbeei_contig187:6010..6240Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig187 6011..6240 -
1683186153.1705024-UTR-P-wetherbeei_contig187:8022..81751683186153.1705024-UTR-P-wetherbeei_contig187:8022..8175Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig187 8023..8175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186153.1415887-CDS-P-wetherbeei_contig187:6240..64831683186153.1415887-CDS-P-wetherbeei_contig187:6240..6483Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig187 6241..6483 -
1683186153.150406-CDS-P-wetherbeei_contig187:6860..71271683186153.150406-CDS-P-wetherbeei_contig187:6860..7127Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig187 6861..7127 -
1683186153.159522-CDS-P-wetherbeei_contig187:7395..80221683186153.159522-CDS-P-wetherbeei_contig187:7395..8022Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig187 7396..8022 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig187.3.4prot_P-wetherbeei_contig187.3.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig187 6241..8022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig187.3.4

>prot_P-wetherbeei_contig187.3.4 ID=prot_P-wetherbeei_contig187.3.4|Name=mRNA_P-wetherbeei_contig187.3.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=379bp
MTTPEEARLSLETSQQQLAQIDGLLAQSPGDAQLLGLRADVVEAMTLSQE
ILEAFGAQGNGGGAGGGGGASSSAAAASSDQPPQPPPPPPPPPLPVHEAS
VSDDIFGVGSRVEVLSGVQWLPAWITAPSPDGGFVVRLYGSGTKEQKVSL
SSIRRLVPQPYGFQSGVVTAGQACQAVFREDGQFYEAVVTEVTAYGYRVT
FTGYGNSEEVPLEYLRRGGSADAVGGTAAGAAAAAGTGAASFGSSAAGAA
SGRGTSGELPPVPAAALDEDGNFKIPDNLKPHPGDTDAERERKRKKIKAL
KSRVRLRQKDEETTHKQSSWQAFASGKGASKPAKGSLKGLRKESIFRSPD
APDGRVGVTGSGQGMTGFEGRKKLKTDL*
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mRNA from alignment at P-wetherbeei_contig187:6011..8175-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig187.3.4 ID=mRNA_P-wetherbeei_contig187.3.4|Name=mRNA_P-wetherbeei_contig187.3.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2165bp|location=Sequence derived from alignment at P-wetherbeei_contig187:6011..8175- (Phaeothamnion wetherbeei SAG_119_79)
ACGAGGGGGAACACGCGAAGAGGAAGAACTTGAAGTCCCCACAATCGCAA CTCCACCAACGCACGCTTACTCAGCAGAAAACGGTCGCGGAAAGGGAAGA AAGCGAGAAAACTCGCCTGTAGCCAACACAAGCAACTCTCCCAGGAGGGG CGAATGACAACGCCGGAGGAGGCCCGCCTCTCTCTGGAAACGAGCCAACA ACAGCTCGCCCAAATCGATGGGCTGCTGGCACAAAGCCCCGGGGACGCGC AGCTGCTCGGCTTGCGCGCCGATGTCGTCGAAGCAATGACTCTGTCCCAA GAAATTCTTGAGGCGTTCGGAGCCCAAGGCAACGGAGGCGGCGCAGGCGG CGGTGGAGGTGCCTCGTCTTCCGCCGCCGCCGCGAGCAGCGACCAGCCGC CGCAACCACCGCCGCCGCCACCGCCGCCGCCATTGCCGGTCCACGAGGCC TCTGTGTCGGACGACATTTTCGGCGTGGGGTCCCGCGTCGAGGTGCTGAG CGGCGTCCAGTGGCTTCCCGCGTGGATAACGGCGCCGTCCCCGGACGGCG GCTTCGTGGTGCGGCTGTACGGTTCTGGGACAAAAGAGCAGAAGGTCTCG CTTTCCTCGATCCGGCGGCTCGTGCCGCAACCCTACGGGTTCCAGAGCGG CGTCGTCACCGCCGGTCAGGCGTGTCAGGCCGTCTTCCGTGAGGATGGAC AGTTCTATGAAGCAGTTGTGACCGAGGTCACCGCCTATGGATACCGCGTA ACCTTCACGGGCTACGGCAACTCCGAGGAGGTGAAGTTTGAAGGAAGATA GCTTCTACTTTGGTCTTTCCATTTTTTCAAGTGCCGACGGATCGTCGCTT TATTATCTTCACTGCCTTTTGGGTCTGGGTGTTGGAATGCATTCCGGCCT CAAGCTCTTTCGAAGTGCACGCTAGCCCTCCAGGGCACCCGCACCATCGA GGTTGATACAGCATCTACACTGCACGTCATCGCTCCTAATGTCCGACCTG CTGCCTACTGTCTCCAAAAAATCGCTTCGCGATCGCCTCGACCAGCAGGT GCCGTTGGAATACCTGCGGCGAGGCGGCAGCGCTGATGCGGTGGGAGGCA CGGCGGCCGGCGCAGCGGCGGCCGCTGGCACCGGCGCCGCCTCCTTCGGC TCCTCCGCGGCAGGCGCCGCCTCCGGTAGGGGCACCAGCGGCGAGCTGCC GCCGGTGCCGGCTGCCGCGCTCGATGAAGACGGAAATTTCAAGATTCCCG ACAACTTGAAGCCGCACCCGGGCGACACGGACGCCGAGCGGGAGCGTAAA CGCAAGAAAATCAAGGTGAGGAGAAATGAAAAGGCCACCGGTCCCCTTTT TTGTGCTTTTGTTTATGTCCCCTGGCAAGGAAAGTTGAGCGAGCCTTCTG TAGCATCGGACAGATGCCGCTAGCTGTTCTTGTTTGAGTGCTTTAGTTTT CACAGAAGGCGCGACGCCGTTTTTAAGCTTCGATTTCTGGGAATTGATGT AGCTGCGTACCACGCTGCGTTAAAGGTCATCCGTTGCCCTTCCTGCTAGC TTCAAAAAGACTTTCGATCGGCGTCTTTCTTCCTCTCCACTTCCCTTGCA CGGGCGCCACCGTCCGCTCCGCCTCCAATATTGATGCCGCCCATGCTCCG GTGCCGCCGATGCCTTTTCGATACGACGACTGAGCGGCACAGGCACTCAA GAGCCGCGTCCGGCTCCGGCAGAAAGACGAAGAAACGACGCACAAGCAGA GCTCCTGGCAGGCCTTCGCCAGTGGCAAGGGCGCCAGCAAGCCCGCTAAG GGCAGCCTAAAAGGATTACGAAAGGAGAGCATATTTCGGTCGCCCGACGC GCCGGATGGCCGGGTTGGTGTCACTGGCAGCGGCCAGGGCATGACGGGCT TCGAGGGTCGCAAGAAGCTCAAGACGGACCTGTAAAGGATCTGGATGGCT GCATCCTGAGGATTTTCGGATCTCTGGCGGTGCGGTCATCCGGCTGTCAT TCTCCGCCGATGGGAAGGTGGACTTGGCAGAAAGAAGACAGAAACGATGA GAGTGAGTGGAGATTTTTGAAAGGAAGACTGGATGGCGGATGCGGTGTTC TGAGGGCGAGACAGCTGATCAGTCCGCATGGACCCACAGTTCTTATAACC GGAAACGAACACATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig187:6011..8175-

>mRNA_P-wetherbeei_contig187.3.4 ID=mRNA_P-wetherbeei_contig187.3.4|Name=mRNA_P-wetherbeei_contig187.3.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1137bp|location=Sequence derived from alignment at P-wetherbeei_contig187:6011..8175- (Phaeothamnion wetherbeei SAG_119_79)
ATGACAACGCCGGAGGAGGCCCGCCTCTCTCTGGAAACGAGCCAACAACA
GCTCGCCCAAATCGATGGGCTGCTGGCACAAAGCCCCGGGGACGCGCAGC
TGCTCGGCTTGCGCGCCGATGTCGTCGAAGCAATGACTCTGTCCCAAGAA
ATTCTTGAGGCGTTCGGAGCCCAAGGCAACGGAGGCGGCGCAGGCGGCGG
TGGAGGTGCCTCGTCTTCCGCCGCCGCCGCGAGCAGCGACCAGCCGCCGC
AACCACCGCCGCCGCCACCGCCGCCGCCATTGCCGGTCCACGAGGCCTCT
GTGTCGGACGACATTTTCGGCGTGGGGTCCCGCGTCGAGGTGCTGAGCGG
CGTCCAGTGGCTTCCCGCGTGGATAACGGCGCCGTCCCCGGACGGCGGCT
TCGTGGTGCGGCTGTACGGTTCTGGGACAAAAGAGCAGAAGGTCTCGCTT
TCCTCGATCCGGCGGCTCGTGCCGCAACCCTACGGGTTCCAGAGCGGCGT
CGTCACCGCCGGTCAGGCGTGTCAGGCCGTCTTCCGTGAGGATGGACAGT
TCTATGAAGCAGTTGTGACCGAGGTCACCGCCTATGGATACCGCGTAACC
TTCACGGGCTACGGCAACTCCGAGGAGGTGCCGTTGGAATACCTGCGGCG
AGGCGGCAGCGCTGATGCGGTGGGAGGCACGGCGGCCGGCGCAGCGGCGG
CCGCTGGCACCGGCGCCGCCTCCTTCGGCTCCTCCGCGGCAGGCGCCGCC
TCCGGTAGGGGCACCAGCGGCGAGCTGCCGCCGGTGCCGGCTGCCGCGCT
CGATGAAGACGGAAATTTCAAGATTCCCGACAACTTGAAGCCGCACCCGG
GCGACACGGACGCCGAGCGGGAGCGTAAACGCAAGAAAATCAAGGCACTC
AAGAGCCGCGTCCGGCTCCGGCAGAAAGACGAAGAAACGACGCACAAGCA
GAGCTCCTGGCAGGCCTTCGCCAGTGGCAAGGGCGCCAGCAAGCCCGCTA
AGGGCAGCCTAAAAGGATTACGAAAGGAGAGCATATTTCGGTCGCCCGAC
GCGCCGGATGGCCGGGTTGGTGTCACTGGCAGCGGCCAGGGCATGACGGG
CTTCGAGGGTCGCAAGAAGCTCAAGACGGACCTGTAA
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