mRNA_P-wetherbeei_contig18618.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18618.1.1
Unique NamemRNA_P-wetherbeei_contig18618.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18618.1.1 vs. uniprot
Match: UPI00083399DB (hypothetical protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=UPI00083399DB)

HSP 1 Score: 122 bits (307), Expect = 4.980e-31
Identity = 92/215 (42.79%), Postives = 122/215 (56.74%), Query Frame = 1 
Query:    1 ENVPEVNGDES---ALVPPQAAPKAEWPKKIRTLTAAELDRLTIDAEGRFLWDGKPVTYEVPSLPVTKAAEAKMPEFKTTEAPAVQADAKPVDPFDRIALEIMESTRLELADGRPAPARA-AEPLKPAEEISLAE--ALNLVAEAKPAEPPMTSVAVTRRTGADRIRVSLSGWQSLGLIVVLLALLLGAAGIGALGWVAAHDWSCRTGLTTTSCP 627
            E  PEVN DES   +   PQ  P  EWPKKIRTLTA ELDRLTID  GRF WDGK V YE P +    A+E   P  +  +      D  P    +    E  E+  ++ +D  P  A A  +     +E+   +  A+N     + +E   T VA T +   DRIRVS++GWQSLG ++V+L L++G+ GI ALG++AAHDW CR GL  ++CP
Sbjct:    5 EPYPEVNLDESGHESRPTPQQGP--EWPKKIRTLTATELDRLTIDGAGRFYWDGKLVNYE-PPVAAKPASEKPEPLSRLGDL-----DRDPYGFDEPKPSEHTEADHIDRSDDAPMHAVAHRDHYNEFDELRTVQHRAVNHDIGTEMSE---TYVAPTIQM-PDRIRVSMTGWQSLGALIVVLCLIVGSLGIAALGFIAAHDWGCRAGLFQSNCP 207
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18618.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00083399DB4.980e-3142.79hypothetical protein n=1 Tax=Rhodoplanes sp. Z2-YC... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18618contigP-wetherbeei_contig18618:10..807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size672
Hectar predicted targeting categoryother localisation
Exons2
Cds size672
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186150.8660228-CDS-P-wetherbeei_contig18618:9..4411683186150.8660228-CDS-P-wetherbeei_contig18618:9..441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18618 10..441 +
1683186150.8742533-CDS-P-wetherbeei_contig18618:567..8071683186150.8742533-CDS-P-wetherbeei_contig18618:567..807Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18618 568..807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18618.1.1prot_P-wetherbeei_contig18618.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18618 10..807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18618.1.1

>prot_P-wetherbeei_contig18618.1.1 ID=prot_P-wetherbeei_contig18618.1.1|Name=mRNA_P-wetherbeei_contig18618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp
ENVPEVNGDESALVPPQAAPKAEWPKKIRTLTAAELDRLTIDAEGRFLWD
GKPVTYEVPSLPVTKAAEAKMPEFKTTEAPAVQADAKPVDPFDRIALEIM
ESTRLELADGRPAPARAAEPLKPAEEISLAEALNLVAEAKPAEPPMTSVA
VTRRTGADRIRVSLSGWQSLGLIVVLLALLLGAAGIGALGWVAAHDWSCR
TGLTTTSCPKPPPAPPQRAEIPA*
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mRNA from alignment at P-wetherbeei_contig18618:10..807+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18618.1.1 ID=mRNA_P-wetherbeei_contig18618.1.1|Name=mRNA_P-wetherbeei_contig18618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=798bp|location=Sequence derived from alignment at P-wetherbeei_contig18618:10..807+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAACGTCCCCGAGGTCAACGGCGACGAGTCGGCTCTGGTGCCCCCGCA
GGCCGCCCCCAAAGCGGAATGGCCTAAAAAAATTCGCACGCTGACGGCGG
CCGAGCTGGACCGCCTGACCATCGACGCCGAAGGCCGGTTCCTGTGGGAC
GGCAAGCCGGTGACTTACGAAGTCCCCAGTTTGCCCGTGACCAAGGCTGC
GGAGGCCAAGATGCCCGAGTTCAAGACGACTGAAGCGCCTGCGGTTCAAG
CCGACGCCAAGCCGGTCGACCCGTTCGACCGCATCGCGCTCGAGATCATG
GAAAGCACGCGGCTTGAGCTCGCCGACGGCAGGCCGGCGCCAGCGCGCGC
AGCCGAACCCCTGAAGCCGGCCGAGGAGATCAGTCTCGCGGAAGCACTCA
ACCTCGTGGCCGAGGCGAAGCCTGCAGAGCCGGTCGAGCCTGTTGTCGAG
GCTGCGGCTGCCCAAATCACTCCTGCCGTCGAAACAGCCGTAACGATCGT
CCCCACCCCGGTCGAGCCCGCCGTTGCGCCGATCGTCACGCCGCCCCGGC
TGTCCGAGCCTATGACTTCGGTTGCGGTGACGCGGCGGACCGGCGCCGAC
CGGATCCGTGTATCGCTGTCCGGCTGGCAGTCGCTTGGCCTGATCGTCGT
GCTTCTCGCCCTTCTCCTCGGCGCGGCCGGCATCGGCGCACTGGGCTGGG
TGGCGGCGCATGACTGGAGCTGCCGCACCGGTCTGACCACCACGTCTTGC
CCGAAGCCCCCGCCTGCACCGCCCCAGCGCGCCGAAATCCCCGCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18618:10..807+

>mRNA_P-wetherbeei_contig18618.1.1 ID=mRNA_P-wetherbeei_contig18618.1.1|Name=mRNA_P-wetherbeei_contig18618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig18618:10..807+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAACGTCCCCGAGGTCAACGGCGACGAGTCGGCTCTGGTGCCCCCGCA
GGCCGCCCCCAAAGCGGAATGGCCTAAAAAAATTCGCACGCTGACGGCGG
CCGAGCTGGACCGCCTGACCATCGACGCCGAAGGCCGGTTCCTGTGGGAC
GGCAAGCCGGTGACTTACGAAGTCCCCAGTTTGCCCGTGACCAAGGCTGC
GGAGGCCAAGATGCCCGAGTTCAAGACGACTGAAGCGCCTGCGGTTCAAG
CCGACGCCAAGCCGGTCGACCCGTTCGACCGCATCGCGCTCGAGATCATG
GAAAGCACGCGGCTTGAGCTCGCCGACGGCAGGCCGGCGCCAGCGCGCGC
AGCCGAACCCCTGAAGCCGGCCGAGGAGATCAGTCTCGCGGAAGCACTCA
ACCTCGTGGCCGAGGCGAAGCCTGCAGAGCCGCCTATGACTTCGGTTGCG
GTGACGCGGCGGACCGGCGCCGACCGGATCCGTGTATCGCTGTCCGGCTG
GCAGTCGCTTGGCCTGATCGTCGTGCTTCTCGCCCTTCTCCTCGGCGCGG
CCGGCATCGGCGCACTGGGCTGGGTGGCGGCGCATGACTGGAGCTGCCGC
ACCGGTCTGACCACCACGTCTTGCCCGAAGCCCCCGCCTGCACCGCCCCA
GCGCGCCGAAATCCCCGCGTAA
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