mRNA_P-wetherbeei_contig1859.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1859.1.1
Unique NamemRNA_P-wetherbeei_contig1859.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1859.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1859contigP-wetherbeei_contig1859:3999..6073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1656
Hectar predicted targeting categoryother localisation
Exons4
Cds size1656
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186150.0726762-CDS-P-wetherbeei_contig1859:3998..43011683186150.0726762-CDS-P-wetherbeei_contig1859:3998..4301Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1859 3999..4301 -
1683186150.0838294-CDS-P-wetherbeei_contig1859:4418..54141683186150.0838294-CDS-P-wetherbeei_contig1859:4418..5414Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1859 4419..5414 -
1683186150.093761-CDS-P-wetherbeei_contig1859:5644..57301683186150.093761-CDS-P-wetherbeei_contig1859:5644..5730Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1859 5645..5730 -
1683186150.1033404-CDS-P-wetherbeei_contig1859:5802..60731683186150.1033404-CDS-P-wetherbeei_contig1859:5802..6073Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1859 5803..6073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1859.1.1prot_P-wetherbeei_contig1859.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1859 3999..6073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1859.1.1

>prot_P-wetherbeei_contig1859.1.1 ID=prot_P-wetherbeei_contig1859.1.1|Name=mRNA_P-wetherbeei_contig1859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=552bp
WYLPFETLVSAVDATGETALDLARRVGHADVAALLEDASNRVAEWHARAA
VIGRAAERVDCPLGCGKPCRRDRLEGHVIGHCRLRRVPCPGNSGYGSCGA
MVVAEAVARHMLSECPKRSVPCPNWGFGCTSHFPAHAANVHALHRCPYRR
LPCRRGCGAIVAAREREPHESDTCPLSVHPCPRGCGAAAVERRAAGAHAA
ACPRRPARCRFGCGRCMPHEELDVHYETVCRRPCRWPGCGVRVAPAAKLD
AHERLTCPFRPVSCPHAGCPNGPMPAKTLEEHAMQRCAARPTACPRGCGA
VLKAAAVAAHVVAESGDCPERLMRCRLDCLHRRIVVSTSDCSAEAVPVVE
RTAAPGSVSLPPESFSEVSLPLPSTAVTASIVTVARAAEPADEGLKVENA
SEDATQTAEAMRLPGMEMALLQEYDDVSGAFLISYPHRVVWQRLAGFGII
YGSAVATIATISAADAAAGWRCGWIPASAMAVHLAGACPLRRGPCKAGCG
QHVVAADAERHFRDRCVKRTVACALGCGKRLPADTAEEHAARQCPLREVP
CD
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mRNA from alignment at P-wetherbeei_contig1859:3999..6073-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1859.1.1 ID=mRNA_P-wetherbeei_contig1859.1.1|Name=mRNA_P-wetherbeei_contig1859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2075bp|location=Sequence derived from alignment at P-wetherbeei_contig1859:3999..6073- (Phaeothamnion wetherbeei SAG_119_79)
TGGTATCTGCCATTCGAAACGCTCGTAAGCGCCGTCGACGCCACCGGCGA
AACGGCACTGGACCTGGCACGGCGCGTGGGCCACGCCGACGTCGCCGCTC
TGCTGGAAGACGCCTCCAACCGCGTGGCGGAATGGCACGCACGTGCTGCC
GTCATCGGTCGTGCGGCAGAAAGGGTGGACTGCCCTCTGGGGTGCGGCAA
GCCGTGCCGCCGGGATCGGCTGGAGGGGCACGTGATTGGACACTGTCGTT
TGCGGCGGGTGCCTTGCCCCGGTCACCACCAGGACGATGGTGACGACTAC
GCGACAGGTGGCGGCAGCAGCAGCAATGGCGGCAGCGTCAAAGGGAACAG
CGGCTACGGCAGTTGCGGCGCCATGGTTGTGGCGGAGGCGGTGGCACGGC
ACATGCTGTCCGAATGCCCCAAACGAAGCGTGAGTGTAATTCCCGACGTT
CGTGCTGGCTGTAGAAGCGTCAATGGTCAGTGCGTGATGCTCGGTTTCCT
TCTGCTTCCTGGCATGATGGCCGCATTCAACCTTACAAGAAGCACAGCAC
TGCGAGTAGCAGTGCTGGTAGCATTATTCATTTTGTGTACATGGACCTGT
TTAAATCGCTCCATTGCCTGCGACTCCTCCCCCTTCTGTGATGGGATCGC
TTCCTTCAGGTGCCATGCCCCAACTGGGGGTTCGGTTGCACGTCGCACTT
CCCGGCCCACGCCGCCAACGTGCACGCCCTCCATCGCTGCCCCTATCGCC
GCCTGCCCTGCCGCCGCGGCTGTGGCGCCATCGTTGCCGCGCGCGAGCGG
GAGCCGCACGAGTCTGACACGTGCCCGCTCAGCGTCCACCCCTGCCCGCG
CGGATGCGGCGCCGCCGCTGTCGAGCGCCGCGCCGCCGGCGCCCACGCGG
CGGCCTGCCCGCGCCGCCCGGCTCGCTGCCGCTTCGGCTGCGGTCGATGC
ATGCCGCACGAGGAATTGGATGTGCACTACGAGACCGTCTGCCGCCGGCC
GTGCCGTTGGCCCGGCTGCGGCGTTCGTGTGGCACCCGCCGCCAAGCTGG
ACGCCCACGAGCGGCTGACCTGCCCGTTCCGGCCCGTGTCCTGTCCACAT
GCTGGCTGCCCCAATGGACCGATGCCGGCCAAGACGCTGGAGGAGCACGC
GATGCAGCGGTGCGCCGCGAGGCCGACGGCGTGTCCGCGCGGCTGCGGCG
CCGTACTGAAGGCGGCGGCGGTGGCGGCGCATGTGGTGGCGGAGAGCGGC
GACTGCCCGGAGCGGCTCATGCGTTGCCGCCTCGACTGCCTCCACCGCCG
CATCGTCGTCTCCACCTCGGATTGCTCGGCTGAGGCGGTTCCGGTCGTTG
AGAGGACAGCGGCACCAGGCAGCGTTTCTCTGCCGCCAGAGAGTTTCTCG
GAAGTCTCCTTGCCGCTGCCATCAACGGCGGTTACGGCTAGCATCGTAAC
CGTCGCAAGGGCCGCTGAGCCGGCAGATGAAGGCCTCAAAGTAGAGAACG
CATCGGAAGATGCTACACAGACGGCGGAAGCCATGCGCTTACCTGGCATG
GAGATGGCGCTGCTGCAGGAGTATGACGACGTTTCGGGTGCGTTTTTGAT
CAGCTATCCACACCGTGTCGTTTGGCAGCGGCTCGCGGGTTTCGGCATTA
TTTACGTCGACGGCGAAGGCGACACCGCAGAGGCAGCCGCCACCGCCCAC
GACGCCGCCGCCGCCGCCGCCGTTGCCGCCACCACCTCATTTACTATTGC
CGGCGATACCGGTGCCGTCAAGGGCTCTGCCGTCGCCACCATCGCAACCA
TTAGCGCAGCCGACGCTGCCGCCGGCTGGCGCTGCGGTTGGATCCCCGCG
TCGGCCATGGCGGTGCACCTTGCTGGCGCCTGCCCGCTGCGGCGGGGCCC
GTGCAAAGCCGGCTGCGGGCAGCACGTGGTGGCGGCGGATGCCGAGCGAC
ACTTCCGGGACCGCTGCGTCAAGCGGACGGTGGCATGCGCGCTCGGCTGT
GGCAAGCGGTTGCCCGCCGACACGGCGGAGGAGCATGCGGCGAGGCAGTG
CCCCCTGCGGGAGGTGCCGTGCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1859:3999..6073-

>mRNA_P-wetherbeei_contig1859.1.1 ID=mRNA_P-wetherbeei_contig1859.1.1|Name=mRNA_P-wetherbeei_contig1859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1656bp|location=Sequence derived from alignment at P-wetherbeei_contig1859:3999..6073- (Phaeothamnion wetherbeei SAG_119_79)
TGGTATCTGCCATTCGAAACGCTCGTAAGCGCCGTCGACGCCACCGGCGA
AACGGCACTGGACCTGGCACGGCGCGTGGGCCACGCCGACGTCGCCGCTC
TGCTGGAAGACGCCTCCAACCGCGTGGCGGAATGGCACGCACGTGCTGCC
GTCATCGGTCGTGCGGCAGAAAGGGTGGACTGCCCTCTGGGGTGCGGCAA
GCCGTGCCGCCGGGATCGGCTGGAGGGGCACGTGATTGGACACTGTCGTT
TGCGGCGGGTGCCTTGCCCCGGGAACAGCGGCTACGGCAGTTGCGGCGCC
ATGGTTGTGGCGGAGGCGGTGGCACGGCACATGCTGTCCGAATGCCCCAA
ACGAAGCGTGCCATGCCCCAACTGGGGGTTCGGTTGCACGTCGCACTTCC
CGGCCCACGCCGCCAACGTGCACGCCCTCCATCGCTGCCCCTATCGCCGC
CTGCCCTGCCGCCGCGGCTGTGGCGCCATCGTTGCCGCGCGCGAGCGGGA
GCCGCACGAGTCTGACACGTGCCCGCTCAGCGTCCACCCCTGCCCGCGCG
GATGCGGCGCCGCCGCTGTCGAGCGCCGCGCCGCCGGCGCCCACGCGGCG
GCCTGCCCGCGCCGCCCGGCTCGCTGCCGCTTCGGCTGCGGTCGATGCAT
GCCGCACGAGGAATTGGATGTGCACTACGAGACCGTCTGCCGCCGGCCGT
GCCGTTGGCCCGGCTGCGGCGTTCGTGTGGCACCCGCCGCCAAGCTGGAC
GCCCACGAGCGGCTGACCTGCCCGTTCCGGCCCGTGTCCTGTCCACATGC
TGGCTGCCCCAATGGACCGATGCCGGCCAAGACGCTGGAGGAGCACGCGA
TGCAGCGGTGCGCCGCGAGGCCGACGGCGTGTCCGCGCGGCTGCGGCGCC
GTACTGAAGGCGGCGGCGGTGGCGGCGCATGTGGTGGCGGAGAGCGGCGA
CTGCCCGGAGCGGCTCATGCGTTGCCGCCTCGACTGCCTCCACCGCCGCA
TCGTCGTCTCCACCTCGGATTGCTCGGCTGAGGCGGTTCCGGTCGTTGAG
AGGACAGCGGCACCAGGCAGCGTTTCTCTGCCGCCAGAGAGTTTCTCGGA
AGTCTCCTTGCCGCTGCCATCAACGGCGGTTACGGCTAGCATCGTAACCG
TCGCAAGGGCCGCTGAGCCGGCAGATGAAGGCCTCAAAGTAGAGAACGCA
TCGGAAGATGCTACACAGACGGCGGAAGCCATGCGCTTACCTGGCATGGA
GATGGCGCTGCTGCAGGAGTATGACGACGTTTCGGGTGCGTTTTTGATCA
GCTATCCACACCGTGTCGTTTGGCAGCGGCTCGCGGGTTTCGGCATTATT
TACGGCTCTGCCGTCGCCACCATCGCAACCATTAGCGCAGCCGACGCTGC
CGCCGGCTGGCGCTGCGGTTGGATCCCCGCGTCGGCCATGGCGGTGCACC
TTGCTGGCGCCTGCCCGCTGCGGCGGGGCCCGTGCAAAGCCGGCTGCGGG
CAGCACGTGGTGGCGGCGGATGCCGAGCGACACTTCCGGGACCGCTGCGT
CAAGCGGACGGTGGCATGCGCGCTCGGCTGTGGCAAGCGGTTGCCCGCCG
ACACGGCGGAGGAGCATGCGGCGAGGCAGTGCCCCCTGCGGGAGGTGCCG
TGCGAC
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