mRNA_P-wetherbeei_contig18576.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18576.1.1
Unique NamemRNA_P-wetherbeei_contig18576.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18576.1.1 vs. uniprot
Match: A0A836CBD6_9STRA (Putative eukaryotic initiation factor 4E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD6_9STRA)

HSP 1 Score: 176 bits (446), Expect = 3.560e-53
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 1
Query:   13 CLRYDKKLAKGAPMD--EYVSTLSKVATFSTVEGFWRTYIHLKRPSSGMENNLNLYLFRDGPGHVPAWESYPNGGCWFLKVRKHGQGNPAVMGKLWQDLVLATVGEVFETPAVVGIGIATRQQNDLLSVWNDEN 408
            C  YDKK  KG   D  EY + L KV TFSTVE FWR Y H+KRPS+ +ENN+N+Y FRD P   P+WES+PNGGCW LK++K      +V+GK+WQDLV A +GE FE P VVG+G+A R + DLLSVWN +N
Sbjct:   41 CFWYDKKHKKGGTGDYNEYKANLHKVHTFSTVEDFWRLYTHIKRPSA-LENNINMYFFRDAPNSSPSWESFPNGGCWILKIKKRAHSGTSVLGKMWQDLVFAAIGECFEEPTVVGVGMAVRSKEDLLSVWNSDN 173          
BLAST of mRNA_P-wetherbeei_contig18576.1.1 vs. uniprot
Match: D7FIH1_ECTSI (Eukaryotic translation initiation factor 4E like2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH1_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 2.210e-51
Identity = 78/131 (59.54%), Postives = 101/131 (77.10%), Query Frame = 1
Query:   22 YDKKLAKGAP-MDEYVSTLSKVATFSTVEGFWRTYIHLKRPSSGMENNLNLYLFRDGPGHVPAWESYPNGGCWFLKVRKH-GQGNPAVMGKLWQDLVLATVGEVFETPAVVGIGIATRQQNDLLSVWNDEN 408
            YDKK+ K      +Y ++L K  +F+T+EGFW+ Y+HLKRPS+ +  N+N+YLFRD  GHVP WE YPNGGCW L++RK  GQ N +V+GK+WQDLVLA VGE+FE P VVGIG+A R + DLLSVWN++N
Sbjct:   38 YDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSN-ISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDN 167          
BLAST of mRNA_P-wetherbeei_contig18576.1.1 vs. uniprot
Match: A0A6V1NUK3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUK3_HETAK)

HSP 1 Score: 165 bits (418), Expect = 7.150e-49
Identity = 76/132 (57.58%), Postives = 95/132 (71.97%), Query Frame = 1
Query:   13 CLRYDKKLAKGAPMDEYVSTLSKVATFSTVEGFWRTYIHLKRPSSGMENNLNLYLFRDGPGHVPAWESYPNGGCWFLKVRKHGQGNPAVMGKLWQDLVLATVGEVFETPAVVGIGIATRQQNDLLSVWNDEN 408
            C  YDKKL K A ++EY S L  +  F TVEGFWR Y+HLKRP++ +E N NL+LFR G  +VP WE++P GGCW LK+RK   G P+V+ KLW DLVLA +GE F  P VVGIG++ R + DLLSVWN +N
Sbjct:   47 CFWYDKKLQKNADLNEYKSHLHNLGAFHTVEGFWRYYVHLKRPAA-LEVNTNLHLFRHGEQYVPMWEAFPKGGCWILKLRKTPSG-PSVLSKLWHDLVLAVIGEAFAEPDVVGIGLSVRAREDLLSVWNGDN 176          
BLAST of mRNA_P-wetherbeei_contig18576.1.1 vs. uniprot
Match: A0A067BS98_SAPPC (Uncharacterized protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BS98_SAPPC)

HSP 1 Score: 161 bits (407), Expect = 1.330e-47
Identity = 73/134 (54.48%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   13 CLRYDKKLAKGAPMDEYVSTLSKVATFSTVEGFWRTYIHLKRPSSGMENNLNLYLFRDGPGHVPAWESYPNGGCWFLKVRKHGQGNPAVMGKLWQDLVLATVGEVFETPAVVGIGIATRQQNDLLSVWNDENGD 414
            CL YD+KL K   +D Y S L K+A F TVE FWR Y+H+KRPS  +  + NLYLFRD P   P WE++PNGGCW LK++K       V+GK+WQDL  A VGE FET  VVGI +A R + D++SVWN +N D
Sbjct:   25 CLWYDRKLPKRTDLDTYQSNLQKIAAFGTVEDFWRHYVHVKRPSQ-LNKDTNLYLFRDAPNCAPMWEAFPNGGCWILKIKKKAN----VLGKMWQDLCFAAVGEAFETLNVVGIAMAIRSKEDMISVWNADNTD 153          
BLAST of mRNA_P-wetherbeei_contig18576.1.1 vs. uniprot
Match: A0A8K1CP93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP93_PYTOL)

HSP 1 Score: 159 bits (401), Expect = 1.330e-46
Identity = 73/132 (55.30%), Postives = 91/132 (68.94%), Query Frame = 1
Query:   13 CLRYDKKLAKGAPMDEYVSTLSKVATFSTVEGFWRTYIHLKRPSSGMENNLNLYLFRDGPGHVPAWESYPNGGCWFLKVRKHGQGNPAVMGKLWQDLVLATVGEVFETPAVVGIGIATRQQNDLLSVWNDEN 408
            C+ YDKKL K   +  Y S L K+A FSTVE FWR YIH+KRPS  +  ++NLYLFRD P   P WE++PNGGCW LK++K       V+GK+WQDLV A VGE FE   VVGI +A R + D++SVWN +N
Sbjct:   29 CIWYDKKLPKKIDVGTYQSNLQKIAAFSTVEDFWRHYIHIKRPSQ-LNRDVNLYLFRDRPNCAPMWEAFPNGGCWILKIKKKAN----VLGKMWQDLVFAAVGEAFEELDVVGIAMAIRSKEDMISVWNADN 155          
BLAST of mRNA_P-wetherbeei_contig18576.1.1 vs. uniprot
Match: W2PGT1_PHYPN (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=W2PGT1_PHYPN)

HSP 1 Score: 155 bits (393), Expect = 2.570e-45
Identity = 72/133 (54.14%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   16 LRYDKKLAKGAPMDEYVSTLSKVATFSTVEGFWRTYIHLKRPSSGMENNLNLYLFRDGPGHVPAWESYPNGGCWFLKVRKHGQGNPAVMGKLWQDLVLATVGEVFETPAVVGIGIATRQQNDLLSVWNDENGD 414
            L YDKK+ K   +  Y S L K+ATF+TVE FWR YIH+KRPS  +  ++NLYLFRD P   P WE++P GGCW LK++K       V+GK+WQDLV A +GE FE   VVGI +A R + D+LSVWN +N D
Sbjct:   34 LWYDKKMPKKIDVGTYQSNLQKIATFNTVEDFWRHYIHVKRPSQ-LSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKAN----VLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSD 161          
BLAST of mRNA_P-wetherbeei_contig18576.1.1 vs. uniprot
Match: D0N871_PHYIT (Eukaryotic initiation factor 4E, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N871_PHYIT)

HSP 1 Score: 155 bits (392), Expect = 2.720e-45
Identity = 71/132 (53.79%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   19 RYDKKLAKGAPMDEYVSTLSKVATFSTVEGFWRTYIHLKRPSSGMENNLNLYLFRDGPGHVPAWESYPNGGCWFLKVRKHGQGNPAVMGKLWQDLVLATVGEVFETPAVVGIGIATRQQNDLLSVWNDENGD 414
            RYDKK+ K   +  Y S L K+A F+TVE FWR YIH+KRPS  +  ++NLYLFRD P   P WE++P GGCW LK++K       V+GK+WQDLV A +GE FE   VVGI +A R + D+LSVWN +N D
Sbjct:   25 RYDKKMPKKIDVGTYQSNLQKIANFNTVEDFWRHYIHVKRPSQ-LSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKAN----VLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSD 151          
BLAST of mRNA_P-wetherbeei_contig18576.1.1 vs. uniprot
Match: D0P4I3_PHYIT (Eukaryotic initiation factor 4E, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P4I3_PHYIT)

HSP 1 Score: 154 bits (388), Expect = 3.850e-45
Identity = 71/133 (53.38%), Postives = 90/133 (67.67%), Query Frame = 1
Query:   16 LRYDKKLAKGAPMDEYVSTLSKVATFSTVEGFWRTYIHLKRPSSGMENNLNLYLFRDGPGHVPAWESYPNGGCWFLKVRKHGQGNPAVMGKLWQDLVLATVGEVFETPAVVGIGIATRQQNDLLSVWNDENGD 414
            L YDKK+ K   +  Y S L K+A F+TVE FWR YIH+KRPS  +  ++NLYLFRD P   P WE++P GGCW LK++K       V+GK+WQDLV A +GE FE   VVGI +A R + D+LSVWN +N D
Sbjct:   32 LWYDKKMPKKIDVGTYQSNLQKIANFNTVEDFWRHYIHVKRPSQ-LSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKAN----VLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSD 159          
BLAST of mRNA_P-wetherbeei_contig18576.1.1 vs. uniprot
Match: A0A024TXL0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TXL0_9STRA)

HSP 1 Score: 154 bits (390), Expect = 4.850e-45
Identity = 70/133 (52.63%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   16 LRYDKKLAKGAPMDEYVSTLSKVATFSTVEGFWRTYIHLKRPSSGMENNLNLYLFRDGPGHVPAWESYPNGGCWFLKVRKHGQGNPAVMGKLWQDLVLATVGEVFETPAVVGIGIATRQQNDLLSVWNDENGD 414
            L +DKK+ K   +  Y S L K+A F+TVE FWR YIH+KRPS  +  + NLYLFRD P   P WE++PNGGCW LK++K       V+GK+WQDL+ A +GE FET  VVGI +A R + D++SVWN +N D
Sbjct:   23 LWFDKKMPKRTDVSTYQSNLQKIANFNTVEDFWRHYIHVKRPSQ-LAKDTNLYLFRDQPNCAPMWEAFPNGGCWILKIKKKAN----VLGKMWQDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSD 150          
BLAST of mRNA_P-wetherbeei_contig18576.1.1 vs. uniprot
Match: K3WZ97_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WZ97_GLOUD)

HSP 1 Score: 154 bits (390), Expect = 5.140e-45
Identity = 72/133 (54.14%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   16 LRYDKKLAKGAPMDEYVSTLSKVATFSTVEGFWRTYIHLKRPSSGMENNLNLYLFRDGPGHVPAWESYPNGGCWFLKVRKHGQGNPAVMGKLWQDLVLATVGEVFETPAVVGIGIATRQQNDLLSVWNDENGD 414
            L YDKKL K   +  Y S L K+A F+TVE FWR YIH+KRPS  +  ++NLYLFRD P   P WE++P GGCW LK++K       V+GK+WQDLV A +GEVF +  VVGI +A R + D+LSVWN +N D
Sbjct:   27 LWYDKKLPKKIDVGTYQSNLQKIAQFNTVEDFWRHYIHVKRPSQ-LSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKAN----VLGKMWQDLVFAAIGEVFASRDVVGIAMAIRSKEDMLSVWNADNSD 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18576.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBD6_9STRA3.560e-5358.21Putative eukaryotic initiation factor 4E n=1 Tax=T... [more]
D7FIH1_ECTSI2.210e-5159.54Eukaryotic translation initiation factor 4E like2 ... [more]
A0A6V1NUK3_HETAK7.150e-4957.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A067BS98_SAPPC1.330e-4754.48Uncharacterized protein n=5 Tax=Saprolegniaceae Ta... [more]
A0A8K1CP93_PYTOL1.330e-4655.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2PGT1_PHYPN2.570e-4554.14Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
D0N871_PHYIT2.720e-4553.79Eukaryotic initiation factor 4E, putative n=1 Tax=... [more]
D0P4I3_PHYIT3.850e-4553.38Eukaryotic initiation factor 4E, putative n=1 Tax=... [more]
A0A024TXL0_9STRA4.850e-4552.63Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
K3WZ97_GLOUD5.140e-4554.14Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18576contigP-wetherbeei_contig18576:218..1294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIH1
PFAMsIF4E
Model size414
Max annot lvl2759|Eukaryota
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.62e-52
EggNOG OGsCOG5053@1|root,KOG1669@2759|Eukaryota
Ec32 ortholog descriptioneukaryotic translation initiation factor 4E like2
Ec32 orthologEc-28_000250.1
Descriptiontranslation initiation factor activity
Cds size414
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.7492735-CDS-P-wetherbeei_contig18576:217..3851683186149.7492735-CDS-P-wetherbeei_contig18576:217..385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18576 218..385 -
1683186149.7597425-CDS-P-wetherbeei_contig18576:739..8291683186149.7597425-CDS-P-wetherbeei_contig18576:739..829Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18576 740..829 -
1683186149.7682614-CDS-P-wetherbeei_contig18576:1138..12941683186149.7682614-CDS-P-wetherbeei_contig18576:1138..1294Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18576 1139..1294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18576.1.1prot_P-wetherbeei_contig18576.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18576 218..1294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18576.1.1

>prot_P-wetherbeei_contig18576.1.1 ID=prot_P-wetherbeei_contig18576.1.1|Name=mRNA_P-wetherbeei_contig18576.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MLKTCLRYDKKLAKGAPMDEYVSTLSKVATFSTVEGFWRTYIHLKRPSSG
MENNLNLYLFRDGPGHVPAWESYPNGGCWFLKVRKHGQGNPAVMGKLWQD
LVLATVGEVFETPAVVGIGIATRQQNDLLSVWNDENGD
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mRNA from alignment at P-wetherbeei_contig18576:218..1294-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18576.1.1 ID=mRNA_P-wetherbeei_contig18576.1.1|Name=mRNA_P-wetherbeei_contig18576.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1077bp|location=Sequence derived from alignment at P-wetherbeei_contig18576:218..1294- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGAAAACTTGTCTCAGGTACGATAAGAAGTTGGCGAAGGGGGCACC GATGGATGAGTACGTGAGCACGCTCTCCAAGGTGGCGACTTTCAGCACGG TTGAGGGATTCTGGCGCACCTACATCCACCTCAAGCGGCCCTCTTCGGGC ATGGAGGTCGGTTCCGTTTGGTTCGCTTCGGCGATCCAGTTAGCCGGAAG GAGGAGGGAGGAAGGGAAGGGAGAGAAAAATAGAGAAATACAAAAGAGGG ATTTCTGGCTTTTGGGCGGTTGCTGCCCAGTTGCTTTTCACTGTGGTGTG CTGTGGTGGTGGCGCAATTGCGGCGCGGCTTCGGGCTCCTCTCCTGTTGT CACTGAAGTGCACTCGACGCTTTCTGGGCGCTTTGCTTGCTGTCTTTGTA ACCACCTAAACGCCTTCCTCAATCCATTTCTCTTCTCGCTGTTTCGCTTT TTGGTCTCCGAGCAGAACAACCTGAACCTGTACCTGTTCCGGGACGGTCC CGGGCATGTGCCGGCGTGGGAGAGCTACCCCAACGGCGGCTGCTGGTTCC TGAAGGTGCCTCTCTGAACCGGCCTCCAACTTTTTATTATCTTTGCGCGT CTTTCGGTCGCTCTCTTGCCCTCTCCCTTTGGAAGTGACATCTTGCCTCT CTTCGGCTTGCTTCGTATGGAAGGCTGCTCGTATGAGGGAGCGTTCTCCA CTTCCGCGGGCTTCGAGAAATTGGACGAGCTTCTCTGTTTCTGAGGGTTT CCTCTGTCTGCTCGAATCCGTATGAAAGACGGTCCATACTGTCACGATCC GTTTCTACTGTTTCGGTGCACTTTCGCGGGTCCGTCCCGTCTTCAATTTT TGATCCTGCAATTCCGCCTGGCCGTCCCTCTCTCTCCCCCCTTCCCTCTG CCTCTGCAGGTCCGAAAGCACGGGCAGGGCAACCCGGCGGTGATGGGAAA GCTGTGGCAGGACCTGGTACTGGCGACGGTGGGCGAGGTCTTCGAGACAC CCGCCGTCGTTGGCATCGGCATCGCCACGCGCCAGCAGAACGATCTCCTC TCCGTCTGGAACGACGAGAACGGCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18576:218..1294-

>mRNA_P-wetherbeei_contig18576.1.1 ID=mRNA_P-wetherbeei_contig18576.1.1|Name=mRNA_P-wetherbeei_contig18576.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig18576:218..1294- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGAAAACTTGTCTCAGGTACGATAAGAAGTTGGCGAAGGGGGCACC
GATGGATGAGTACGTGAGCACGCTCTCCAAGGTGGCGACTTTCAGCACGG
TTGAGGGATTCTGGCGCACCTACATCCACCTCAAGCGGCCCTCTTCGGGC
ATGGAGAACAACCTGAACCTGTACCTGTTCCGGGACGGTCCCGGGCATGT
GCCGGCGTGGGAGAGCTACCCCAACGGCGGCTGCTGGTTCCTGAAGGTCC
GAAAGCACGGGCAGGGCAACCCGGCGGTGATGGGAAAGCTGTGGCAGGAC
CTGGTACTGGCGACGGTGGGCGAGGTCTTCGAGACACCCGCCGTCGTTGG
CATCGGCATCGCCACGCGCCAGCAGAACGATCTCCTCTCCGTCTGGAACG
ACGAGAACGGCGAC
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