mRNA_P-wetherbeei_contig18568.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18568.1.1
Unique NamemRNA_P-wetherbeei_contig18568.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18568.1.1 vs. uniprot
Match: D8LD88_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD88_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.280e-9
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 LLQAASSIRVTRSLLASLQQDFAVDLIREHLQGGRGAWLTRYGDARAGRPGSG 159
            LL+  + +++TRS L SLQQDFAV L++EHLQG  G WLTRYGDA    PG+G
Sbjct:  444 LLRETADVKLTRSTLNSLQQDFAVQLLKEHLQG-EGQWLTRYGDAPDPTPGAG 495
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BLAST of mRNA_P-wetherbeei_contig18568.1.1 vs. uniprot
Match: A0A6H5KV33_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV33_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.310e-9
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 LLQAASSIRVTRSLLASLQQDFAVDLIREHLQGGRGAWLTRYGDARAGRPGSG 159
            LL+  + +++TRS L SLQQDFAV L++EHLQG  G WLTRYGDA    PG+G
Sbjct:  487 LLRETAEVKLTRSTLNSLQQDFAVQLLKEHLQG-EGQWLTRYGDAPDPTPGAG 538
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18568.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD88_ECTSI1.280e-960.38Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KV33_9PHAE1.310e-960.38Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18568contigP-wetherbeei_contig18568:131..331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LD88
Preferred nameFASTKD3
PFAMsFAST_1,FAST_2,RAP,RabGAP-TBC
Model size201
Max annot lvl2759|Eukaryota
KEGG koko:K19944
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.11e-10
EggNOG OGsCOG5210@1|root,KOG1102@2759|Eukaryota
Descriptionregulation of vesicle fusion
Cds size201
COG categoryK
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186149.612749-CDS-P-wetherbeei_contig18568:130..3311683186149.612749-CDS-P-wetherbeei_contig18568:130..331Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18568 131..331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18568.1.1prot_P-wetherbeei_contig18568.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18568 131..331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18568.1.1

>prot_P-wetherbeei_contig18568.1.1 ID=prot_P-wetherbeei_contig18568.1.1|Name=mRNA_P-wetherbeei_contig18568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
LLQAASSIRVTRSLLASLQQDFAVDLIREHLQGGRGAWLTRYGDARAGRP
GSGGSSSGGGGGGGNGI
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mRNA from alignment at P-wetherbeei_contig18568:131..331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18568.1.1 ID=mRNA_P-wetherbeei_contig18568.1.1|Name=mRNA_P-wetherbeei_contig18568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig18568:131..331- (Phaeothamnion wetherbeei SAG_119_79)
CTTCTGCAGGCGGCGTCGTCCATCCGCGTGACGCGGTCGCTACTGGCATC
GCTGCAGCAGGACTTCGCCGTCGACCTGATCCGTGAGCACCTGCAAGGCG
GCCGCGGCGCCTGGCTCACGCGCTACGGGGACGCCCGCGCCGGCCGTCCC
GGCAGCGGCGGGAGCAGTAGCGGCGGCGGCGGCGGCGGCGGCAACGGCAT
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18568:131..331-

>mRNA_P-wetherbeei_contig18568.1.1 ID=mRNA_P-wetherbeei_contig18568.1.1|Name=mRNA_P-wetherbeei_contig18568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig18568:131..331- (Phaeothamnion wetherbeei SAG_119_79)
CTTCTGCAGGCGGCGTCGTCCATCCGCGTGACGCGGTCGCTACTGGCATC
GCTGCAGCAGGACTTCGCCGTCGACCTGATCCGTGAGCACCTGCAAGGCG
GCCGCGGCGCCTGGCTCACGCGCTACGGGGACGCCCGCGCCGGCCGTCCC
GGCAGCGGCGGGAGCAGTAGCGGCGGCGGCGGCGGCGGCGGCAACGGCAT
C
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