mRNA_P-wetherbeei_contig18507.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18507.1.1
Unique NamemRNA_P-wetherbeei_contig18507.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18507.1.1 vs. uniprot
Match: A0A5D6Y7L1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7L1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.160e-15
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    7 RAFERYSLLLETRPMATKAATACVLAGLSDLVCQELQIRYEQQAASGSKGLAAFSMLG-VVIAPALHVWYSYMARLLPGTSAGSVVRRVALDQFV 288
            RA+ +Y +LLETRP+ATK  T   +AG+ D+ CQ   +  E      +K  A F+ LG V I+P LHVWY ++ R++PGT++ +  +RVALD  V
Sbjct:   50 RAWTKYLVLLETRPLATKIVTGGAIAGIGDINCQ---LFLEHGKPFDAKRTAVFTFLGGVFISPILHVWYGFLGRVVPGTTSLAAAKRVALDVLV 141          
BLAST of mRNA_P-wetherbeei_contig18507.1.1 vs. uniprot
Match: A0A1Z5JYC6_FISSO (Protein Mpv17 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYC6_FISSO)

HSP 1 Score: 75.1 bits (183), Expect = 1.730e-14
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   22 YSLLLETRPMATKAATACVLAGLSDLVCQELQIRYEQQAASGSKGLAAFSMLGVVIAPALHVWYSYMARLLPGTSAGSVVRRVALDQFVFTP 297
            YS  L+T P+ TK+ T+ ++AG+ D  CQ  Q    Q     ++    F + GV++ P +H+WY  +A  LPGT+  +V++RV LDQFVFTP
Sbjct:   31 YSHKLDTHPITTKSITSAIIAGIGDGACQYGQ--RNQSKWDVNRTGRFFVLGGVLVGPLIHLWYGVLATYLPGTAVTTVIKRVILDQFVFTP 120          
BLAST of mRNA_P-wetherbeei_contig18507.1.1 vs. uniprot
Match: A0A1Z5KCH1_FISSO (Protein Mpv17 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCH1_FISSO)

HSP 1 Score: 75.1 bits (183), Expect = 1.910e-14
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   22 YSLLLETRPMATKAATACVLAGLSDLVCQELQIRYEQQAASGSKGLAAFSMLGVVIAPALHVWYSYMARLLPGTSAGSVVRRVALDQFVFTP 297
            YS  L+T P+ TK+ T+ ++AG+ D  CQ  Q   +Q     ++    F + GV++ P +H+WY  +A  LPGT+  +V++RV LDQFVFTP
Sbjct:   38 YSHKLDTHPITTKSITSAIIAGIGDGACQYGQP--DQSRWDVNRTGRFFVLGGVLVGPLIHLWYGVLATYLPGTAVMTVIKRVLLDQFVFTP 127          
BLAST of mRNA_P-wetherbeei_contig18507.1.1 vs. uniprot
Match: A0A1V9YRH4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YRH4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.150e-14
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   13 FERYSLLLETRPMATKAATACVLAGLSDLVCQELQIRYEQQAASGSKGLAAFSMLGVVIAPALHVWYSYMARLLPGTSAGSVVRRVALDQFVFTP 297
            ++RY LLLET+P+ TK  ++  +A   D  CQ +   +E       + +   ++ GV IAP LHVWY ++ R + G    +VV+R+ LDQFVF P
Sbjct:   29 WQRYLLLLETKPLPTKIISSAGIAAFGDFTCQTV---FEDHPFDTKRFMIFTTLGGVYIAPTLHVWYGFLNRAVTGVGKLAVVKRMMLDQFVFAP 120          
BLAST of mRNA_P-wetherbeei_contig18507.1.1 vs. uniprot
Match: A0A7S0C1U0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1U0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.050e-10
Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   22 YSLLLETRPMATKAATACVLAGLSDLVCQELQIRYEQ--QAASGSKGLAAFSMLGVV-IAPALHVWYSYMARLLPGTSAGSVVRRVALDQFVFTP 297
            YS  L+ RP+ TK A+A ++AG  +L+ Q L    +   Q     K    F ++ ++ +AP LH WY++++  +PG S   V++RV +D+F+FTP
Sbjct:   22 YSHQLDVRPIFTKCASAGIVAGFGNLLAQRLMWDTDGKGQFVIDWKQAGRFVVINIIFVAPCLHHWYNWLSAAMPGKSIAPVLKRVFVDEFIFTP 116          
BLAST of mRNA_P-wetherbeei_contig18507.1.1 vs. uniprot
Match: A0A7S3ZTZ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTZ1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.490e-10
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 LGRAFERYSLLLETRPMATKAATACVLAGLSDLVCQELQIRYEQQAASGSKGLAAFSMLGVVIAPALHVWYSYMARLLPGTSAGSVVRRVALDQFVFTP 297
            LG A + Y+  ++  P+ATKAAT+ V+ G SD   Q+L+   E  A   ++ L   ++ G+  APA HVWY+ + RL+P      ++ +  L Q  F P
Sbjct:   25 LGAAAQTYARCMDKAPLATKAATSAVIFGASDACAQKLERVKEPDA---TRLLTTTAIGGLYFAPAAHVWYAQITRLIPKNGLKEILTKALLGQIFFGP 120          
BLAST of mRNA_P-wetherbeei_contig18507.1.1 vs. uniprot
Match: F2U163_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U163_SALR5)

HSP 1 Score: 60.5 bits (145), Expect = 1.170e-8
Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 1
Query:   22 YSLLLETRPMATKAATACVLAGLSDLVCQELQIRYEQQAASGSKGLAAFSML-GVVIAPALHVWYSYMARLLPGTSAGSVVRRVALDQFVFTP 297
            Y+ +L+  P+ TK  TA ++    DL+ Q +Q  +       +K    F +L    +AP LH+WY+ +AR + G     +VR++ALDQF+F P
Sbjct:  121 YTTMLKKHPLPTKTVTAAIIGLCGDLLAQNIQGSFPLDWVRTTK----FVLLQAAFVAPILHIWYNVLARAVKGRGVMLMVRKLALDQFMFAP 209          
BLAST of mRNA_P-wetherbeei_contig18507.1.1 vs. uniprot
Match: UPI0008F9C29B (mpv17-like protein 2 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C29B)

HSP 1 Score: 57.4 bits (137), Expect = 6.390e-8
Identity = 30/91 (32.97%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   25 SLLLETRPMATKAATACVLAGLSDLVCQELQIRYEQQAASGSKGLAAFSMLGVVIAPALHVWYSYMARLLPGTSAGSVVRRVALDQFVFTP 297
            SLL     M T    +  L+G+ D++ Q  +  +E    S  + L   ++ GV +    H WY Y+  +LPGT+  +VV++V LDQ V++P
Sbjct:   11 SLLFSKYLMVTNVGLSGTLSGVGDIIEQRQEAHFEGSKWSPRRTLN-LTISGVTVGVVCHTWYKYLESILPGTTMRTVVKKVLLDQLVYSP 100          
BLAST of mRNA_P-wetherbeei_contig18507.1.1 vs. uniprot
Match: A0A6H5JL95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL95_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.030e-7
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1
Query:  166 FSMLGV-VIAPALHVWYSYMARLLPGTSAGSVVRRVALDQFVFTP 297
            F+ +G  V+APALH WY ++ R LPGT+  +VV+RVALDQ +F P
Sbjct:  149 FTFVGAAVVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAP 193          
BLAST of mRNA_P-wetherbeei_contig18507.1.1 vs. uniprot
Match: A0A2R5GPQ5_9STRA (Protein SYM1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GPQ5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.290e-7
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1
Query:  157 LAAFSMLG-VVIAPALHVWYSYMARLLPGTSAGSVVRRVALDQFVFTP 297
            LA FS+LG V++ P LHVWY Y+   + G S  + ++RV LDQ VFTP
Sbjct:   91 LARFSLLGGVLVGPTLHVWYGYLGTRIAGRSLAATIKRVVLDQAVFTP 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18507.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A5D6Y7L1_9STRA1.160e-1544.21Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1Z5JYC6_FISSO1.730e-1441.30Protein Mpv17 n=1 Tax=Fistulifera solaris TaxID=15... [more]
A0A1Z5KCH1_FISSO1.910e-1441.30Protein Mpv17 n=1 Tax=Fistulifera solaris TaxID=15... [more]
A0A1V9YRH4_9STRA6.150e-1438.95Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S0C1U0_9STRA2.050e-1035.79Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S3ZTZ1_9STRA2.490e-1035.35Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F2U163_SALR51.170e-834.41Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
UPI0008F9C29B6.390e-832.97mpv17-like protein 2 n=1 Tax=Bemisia tabaci TaxID=... [more]
A0A6H5JL95_9PHAE2.030e-755.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5GPQ5_9STRA7.290e-752.08Protein SYM1 n=1 Tax=Hondaea fermentalgiana TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18507contigP-wetherbeei_contig18507:762..1142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI45948
PFAMsMpv17_PMP22
Model size297
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.48e-17
EggNOG OGsKOG1944@1|root,KOG1944@2759|Eukaryota,3QF93@4776|Peronosporales
DescriptionBelongs to the peroxisomal membrane protein PXMP2 4 family
Cds size297
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186148.0704107-CDS-P-wetherbeei_contig18507:761..9261683186148.0704107-CDS-P-wetherbeei_contig18507:761..926Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18507 762..926 +
1683186148.0810585-CDS-P-wetherbeei_contig18507:1010..11421683186148.0810585-CDS-P-wetherbeei_contig18507:1010..1142Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18507 1011..1142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18507.1.1prot_P-wetherbeei_contig18507.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18507 762..1142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18507.1.1

>prot_P-wetherbeei_contig18507.1.1 ID=prot_P-wetherbeei_contig18507.1.1|Name=mRNA_P-wetherbeei_contig18507.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
LGRAFERYSLLLETRPMATKAATACVLAGLSDLVCQELQIRYEQQAASGS
KGLAAFSMLGVVIAPALHVWYSYMARLLPGTSAGSVVRRVALDQFVFTP
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mRNA from alignment at P-wetherbeei_contig18507:762..1142+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18507.1.1 ID=mRNA_P-wetherbeei_contig18507.1.1|Name=mRNA_P-wetherbeei_contig18507.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig18507:762..1142+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGGTCGCGCGTTTGAGCGATACTCTCTTCTCCTGGAAACGCGCCCGAT GGCCACGAAGGCGGCGACGGCGTGCGTATTGGCCGGGCTGAGTGACCTCG TCTGCCAGGAGCTTCAGATTCGCTACGAGCAGCAAGCCGCGAGCGGCAGC AAAGGTCTGGCGGCGGTGGTTGATGAGCTTGCTTTGGCCGAAGAAGGGTG GAAACCGTGCCCACCGCAACGGCGCATCGACTGGGCGCGCGTCGCCAAGT TCTCCATGCTCGGCGTCGTCATCGCGCCCGCGCTGCACGTGTGGTACAGC TACATGGCGCGCCTGTTGCCGGGGACGTCGGCGGGGAGCGTCGTGCGGCG TGTCGCCCTCGATCAGTTCGTCTTCACACCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18507:762..1142+

>mRNA_P-wetherbeei_contig18507.1.1 ID=mRNA_P-wetherbeei_contig18507.1.1|Name=mRNA_P-wetherbeei_contig18507.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig18507:762..1142+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGGTCGCGCGTTTGAGCGATACTCTCTTCTCCTGGAAACGCGCCCGAT
GGCCACGAAGGCGGCGACGGCGTGCGTATTGGCCGGGCTGAGTGACCTCG
TCTGCCAGGAGCTTCAGATTCGCTACGAGCAGCAAGCCGCGAGCGGCAGC
AAAGGTCTGGCGGCGTTCTCCATGCTCGGCGTCGTCATCGCGCCCGCGCT
GCACGTGTGGTACAGCTACATGGCGCGCCTGTTGCCGGGGACGTCGGCGG
GGAGCGTCGTGCGGCGTGTCGCCCTCGATCAGTTCGTCTTCACACCA
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