mRNA_P-wetherbeei_contig18493.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18493.1.1
Unique NamemRNA_P-wetherbeei_contig18493.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18493.1.1 vs. uniprot
Match: A0A8M2BKU9_DANRE (vacuolar protein sorting-associated protein 13B n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M2BKU9_DANRE)

HSP 1 Score: 45.8 bits (107), Expect = 8.130e-5
Identity = 20/46 (43.48%), Postives = 27/46 (58.70%), Query Frame = 1 
Query:    1 LDASLWWGDLVISGITLRDDILRRYLDLPFELREASIASIALRVPW 138
            L  SLW GD+V+S + LR D+L + L LPF      I  + + VPW
Sbjct:   26 LQLSLWGGDVVLSKLDLRLDVLEQELKLPFTFLSGHIHELRIHVPW 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18493.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8M2BKU9_DANRE8.130e-543.48vacuolar protein sorting-associated protein 13B n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18493contigP-wetherbeei_contig18493:358..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7955.ENSDARP00000105695
Preferred nameVPS13B
PFAMsChorein_N,SHR-BD,VPS13,VPS13_C
Model size159
Max annot lvl33208|Metazoa
KEGG koko:K19526
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666
Exons1
Evalue1.33e-05
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota,38DFZ@33154|Opisthokonta,3B9M8@33208|Metazoa,3D0SD@33213|Bilateria,48B5B@7711|Chordata,4953R@7742|Vertebrata,49Z1B@7898|Actinopterygii
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 13A N-terminal domain
Ec32 orthologEc-05_002470.1
DescriptionVacuolar protein sorting 13 homolog B (yeast)
Cds size159
COG categoryU
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.8355093-CDS-P-wetherbeei_contig18493:357..5161683186147.8355093-CDS-P-wetherbeei_contig18493:357..516Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18493 358..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18493.1.1prot_P-wetherbeei_contig18493.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18493 358..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18493.1.1

>prot_P-wetherbeei_contig18493.1.1 ID=prot_P-wetherbeei_contig18493.1.1|Name=mRNA_P-wetherbeei_contig18493.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
LDASLWWGDLVISGITLRDDILRRYLDLPFELREASIASIALRVPWLTVW
LR*
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mRNA from alignment at P-wetherbeei_contig18493:358..516-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18493.1.1 ID=mRNA_P-wetherbeei_contig18493.1.1|Name=mRNA_P-wetherbeei_contig18493.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig18493:358..516- (Phaeothamnion wetherbeei SAG_119_79)
TTAGACGCATCGCTATGGTGGGGAGATTTGGTTATTAGCGGCATCACCCT
GCGCGACGACATCTTGCGACGATACTTGGATCTGCCTTTCGAGCTTCGCG
AAGCGAGTATTGCAAGCATTGCATTGCGAGTGCCCTGGCTTACGGTCTGG
CTGCGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18493:358..516-

>mRNA_P-wetherbeei_contig18493.1.1 ID=mRNA_P-wetherbeei_contig18493.1.1|Name=mRNA_P-wetherbeei_contig18493.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig18493:358..516- (Phaeothamnion wetherbeei SAG_119_79)
TTAGACGCATCGCTATGGTGGGGAGATTTGGTTATTAGCGGCATCACCCT
GCGCGACGACATCTTGCGACGATACTTGGATCTGCCTTTCGAGCTTCGCG
AAGCGAGTATTGCAAGCATTGCATTGCGAGTGCCCTGGCTTACGGTCTGG
CTGCGGTGA
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