mRNA_P-wetherbeei_contig18488.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18488.2.1
Unique NamemRNA_P-wetherbeei_contig18488.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18488.2.1 vs. uniprot
Match: A0A3C1L7I8_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1L7I8_9ACTN)

HSP 1 Score: 188 bits (477), Expect = 1.470e-53
Identity = 125/320 (39.06%), Postives = 177/320 (55.31%), Query Frame = 1 
Query:    1 SMVTAAAGVLGALAVVGSLGHGDVARFSYVACLAGAAGLVLSVAQRHATQRRVWLLVGAGLTSWTIAGALVTLQIGA-FESIPSLVVSILYAAGYPLVLAGLVVLGTPPDVPRRLAAVLDGLIAFSLLYGAVWVLAVQPVSSDSRLPRVDRAFSALYPAFDVALLITTMWLLISKTVWRRVGVLLALGVLLGGAADVALLVLYLRDPAGAWPSTDLVYLLGNASIAVAAMISPAAGPSDRQTPEASGRRLSALVSLAGVGAAATLLALAV-DGRSVRLAPLAGWLVVVAGLNVARSVVGMRSMERTRQQLDWYMTHDRLT 954
            S  T  AG++  L+V GS   G     +YV  L  AA ++L VA +H  Q R W  VG  +T W  AG L+ L   A    IP L +S+LYA GYP +L GL  L  P  + RR   V+DG++ F  LY  +W+  V+ V++D  L +VDRAFSALYPA D+A+L+ T+ ++ S+   RRVG+LL  G  L   ADVALL++YL DP G    TDL+YLLG  + AVAA+ S                 L+  V+++   A + LLA+A+   R + + P+A WL++ A   V R V  ++ +    +   W  +HD  T
Sbjct:   22 SAATLVAGLVLVLSVTGSFATGATGAIAYVVALCVAALVILLVAMQHPRQARAWRFVGGAVTFWAAAGFLLVLSGEAGISGIPPLAISVLYALGYPPLLLGLADLCDPQRLARRFTTVVDGVLLFLGLYAVLWLTVVEQVTADDSLSKVDRAFSALYPAGDLAVLMLTIRIVTSRAARRRVGLLLVTGATLSAVADVALLIVYLSDPYGVATITDLLYLLGLGAFAVAAVWSLLPAXXXXXXXXXXXXXLALTVAISSFAAPSVLLAIALFTDRQLSVTPIAVWLLLAALAAVLRHVASVKELAGAHRHSAWLSSHDLAT 341
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BLAST of mRNA_P-wetherbeei_contig18488.2.1 vs. uniprot
Match: A0A3C2AZK2_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2AZK2_9ACTN)

HSP 1 Score: 174 bits (441), Expect = 6.230e-49
Identity = 118/291 (40.55%), Postives = 171/291 (58.76%), Query Frame = 1 
Query:   25 VLGALAVVGSLGHGDVARFSYVACLAGAAGLVLSVAQRHATQRRVWLLVGAGLTSWTIAGALVTLQIGA-FESIPSLVVSILYAAGYPLVLAGLVVLGTPPDVPRRLAAVLDGLIAFSLLYGAVWVLAVQPVSSDSRLPRVDRAFSALYPAFDVALLITTMWLLISKTVWRRVGVLLALGVLLGGAADVALLVLYLRDPAGAWPSTDLVYLLGNASIAVAAMISPAAGPSDRQTPEASGRRLSALVSLAGVGAAATLLAL-AVDGRSVRLAPLAGWLVVVAGLNVARSVVG 891
            VLG L++ G+L        +YVA +  AA +VL VA +     R W  +G G++ WT+   LVTL   A  +SIP LV++I Y  GY  VL GL  L  P    RR + ++DG++ F +LYG +W+L V+ V+ DS LP ++RAFS+LYPA D+A+++  + ++ S+   RRV +LL  G LL   AD  L+VLYL +P G +P TDL+Y+ G A++A+AA+ S    P       A+ RR   LV+ A V  A  LL + A   R+V L P+A WL  +  +   RS +G
Sbjct:    4 VLGVLSLAGALVDSATGSIAYVAAIGTAAMVVLLVAAQAGGAARAWRFIGIGISIWTVTAFLVTLVSDADVKSIPDLVINIGYTVGYLPVLLGLAELADPRLKVRRWSGLVDGVLVFLVLYGVIWLLVVEAVAYDSELPVIERAFSSLYPAGDIAMVMLAVRVMASRMARRRVALLLVGGSLLCAIADTMLMVLYLVNPDGEYPITDLLYMSGLATLALAALWSLLPAPPPVADHRAASRRAPVLVTSAAVIPALVLLGVVAFTDRNVALVPVAVWLAAMVLVLALRSKIG 294
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BLAST of mRNA_P-wetherbeei_contig18488.2.1 vs. uniprot
Match: A0A8J3LKL0_9ACTN (Uncharacterized protein n=2 Tax=Planosporangium flavigriseum TaxID=373681 RepID=A0A8J3LKL0_9ACTN)

HSP 1 Score: 60.1 bits (144), Expect = 2.430e-6
Identity = 44/135 (32.59%), Postives = 68/135 (50.37%), Query Frame = 1 
Query:   97 LAGAAGLVLSVAQRHATQRRVWLLVGAGLTSWTIAGALVTLQIGAFESIPSLVVS---ILYAAGYPLVLAGLVVLGTPPDVPRRLAAVLDGLIAFSLLYGAVWVLAVQPVSSDSRLPRVDRAFSALYPAFDVALL 492
            LA AA +++ V +   +++R+W  + AG   W +    VT  +  +     LV S   ILY AGYP++L GLV L       R  A ++D  I  + L    W   ++P+  D+ LP + R  S  YPA D+ +L
Sbjct:   42 LASAAAIMVGVRRYRPSRQRIWYCLAAGQVIWVLGD--VTFAVYRYVLNRDLVPSPGDILYLAGYPVLLTGLVALLRGRTSGRDRAGMIDSWIIATGLGLLSWSFLMRPIVQDASLPVLARIVSLAYPALDLVML 174
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18488.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3C1L7I8_9ACTN1.470e-5339.06Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A3C2AZK2_9ACTN6.230e-4940.55Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A8J3LKL0_9ACTN2.430e-632.59Uncharacterized protein n=2 Tax=Planosporangium fl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18488contigP-wetherbeei_contig18488:393..1346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog134676.ACPL_4821
PFAMsEAL,GGDEF
Model size954
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.65e-08
EggNOG OGsCOG5001@1|root,COG5001@2|Bacteria,2GIZF@201174|Actinobacteria,4DH8I@85008|Micromonosporales
Descriptionsignal transduction protein containing a membrane domain, an EAL and a GGDEF domain
Cds size951
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.5490892-UTR-P-wetherbeei_contig18488:392..3951683186147.5490892-UTR-P-wetherbeei_contig18488:392..395Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18488 393..395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.5615468-CDS-P-wetherbeei_contig18488:395..13461683186147.5615468-CDS-P-wetherbeei_contig18488:395..1346Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18488 396..1346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18488.2.1prot_P-wetherbeei_contig18488.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18488 396..1346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18488.2.1

>prot_P-wetherbeei_contig18488.2.1 ID=prot_P-wetherbeei_contig18488.2.1|Name=mRNA_P-wetherbeei_contig18488.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=317bp
MVTAAAGVLGALAVVGSLGHGDVARFSYVACLAGAAGLVLSVAQRHATQR
RVWLLVGAGLTSWTIAGALVTLQIGAFESIPSLVVSILYAAGYPLVLAGL
VVLGTPPDVPRRLAAVLDGLIAFSLLYGAVWVLAVQPVSSDSRLPRVDRA
FSALYPAFDVALLITTMWLLISKTVWRRVGVLLALGVLLGGAADVALLVL
YLRDPAGAWPSTDLVYLLGNASIAVAAMISPAAGPSDRQTPEASGRRLSA
LVSLAGVGAAATLLALAVDGRSVRLAPLAGWLVVVAGLNVARSVVGMRSM
ERTRQQLDWYMTHDRLT
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mRNA from alignment at P-wetherbeei_contig18488:393..1346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18488.2.1 ID=mRNA_P-wetherbeei_contig18488.2.1|Name=mRNA_P-wetherbeei_contig18488.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=954bp|location=Sequence derived from alignment at P-wetherbeei_contig18488:393..1346+ (Phaeothamnion wetherbeei SAG_119_79)
TCGATGGTCACCGCTGCCGCCGGCGTGCTCGGTGCGCTGGCCGTCGTGGG
CTCGCTCGGGCACGGTGACGTCGCCCGGTTCTCCTACGTCGCCTGCCTCG
CCGGCGCCGCCGGACTGGTGCTCAGCGTCGCCCAGCGCCACGCCACCCAA
CGACGCGTGTGGCTGCTCGTCGGTGCCGGGCTGACCTCGTGGACCATCGC
CGGTGCGTTGGTGACCCTCCAGATCGGCGCGTTCGAGTCGATCCCGTCGC
TCGTCGTCTCCATCCTCTACGCAGCCGGCTACCCGCTGGTGCTCGCCGGG
CTCGTCGTGCTCGGCACGCCGCCCGACGTACCTCGCCGGCTCGCTGCCGT
GCTCGACGGCCTCATCGCCTTCTCGCTCCTCTACGGCGCGGTGTGGGTGC
TGGCCGTGCAGCCGGTCAGCAGCGACTCACGTCTGCCGCGGGTCGATCGC
GCGTTCAGCGCGCTGTATCCGGCGTTCGACGTCGCTCTGCTGATCACCAC
CATGTGGCTCTTGATCAGCAAGACGGTGTGGCGGCGCGTCGGCGTGCTGC
TCGCGCTCGGCGTGCTGCTGGGTGGAGCTGCCGATGTCGCCCTGCTCGTG
CTCTACCTGCGCGATCCCGCCGGAGCCTGGCCGTCGACCGACCTCGTCTA
CCTCCTCGGCAACGCTTCGATCGCGGTTGCAGCGATGATCAGCCCGGCCG
CCGGACCGTCGGATCGTCAGACGCCGGAAGCAAGCGGACGCCGCCTGTCC
GCGCTCGTGTCGCTCGCCGGCGTCGGCGCCGCGGCGACCCTGCTCGCACT
CGCCGTGGATGGTCGCAGCGTGCGTCTCGCGCCGCTCGCAGGATGGCTCG
TGGTCGTTGCGGGGCTGAACGTGGCCCGCAGCGTCGTCGGCATGCGCAGC
ATGGAGCGCACTCGTCAGCAGCTCGACTGGTACATGACCCACGACCGTCT
CACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18488:393..1346+

>mRNA_P-wetherbeei_contig18488.2.1 ID=mRNA_P-wetherbeei_contig18488.2.1|Name=mRNA_P-wetherbeei_contig18488.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig18488:393..1346+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCACCGCTGCCGCCGGCGTGCTCGGTGCGCTGGCCGTCGTGGGCTC
GCTCGGGCACGGTGACGTCGCCCGGTTCTCCTACGTCGCCTGCCTCGCCG
GCGCCGCCGGACTGGTGCTCAGCGTCGCCCAGCGCCACGCCACCCAACGA
CGCGTGTGGCTGCTCGTCGGTGCCGGGCTGACCTCGTGGACCATCGCCGG
TGCGTTGGTGACCCTCCAGATCGGCGCGTTCGAGTCGATCCCGTCGCTCG
TCGTCTCCATCCTCTACGCAGCCGGCTACCCGCTGGTGCTCGCCGGGCTC
GTCGTGCTCGGCACGCCGCCCGACGTACCTCGCCGGCTCGCTGCCGTGCT
CGACGGCCTCATCGCCTTCTCGCTCCTCTACGGCGCGGTGTGGGTGCTGG
CCGTGCAGCCGGTCAGCAGCGACTCACGTCTGCCGCGGGTCGATCGCGCG
TTCAGCGCGCTGTATCCGGCGTTCGACGTCGCTCTGCTGATCACCACCAT
GTGGCTCTTGATCAGCAAGACGGTGTGGCGGCGCGTCGGCGTGCTGCTCG
CGCTCGGCGTGCTGCTGGGTGGAGCTGCCGATGTCGCCCTGCTCGTGCTC
TACCTGCGCGATCCCGCCGGAGCCTGGCCGTCGACCGACCTCGTCTACCT
CCTCGGCAACGCTTCGATCGCGGTTGCAGCGATGATCAGCCCGGCCGCCG
GACCGTCGGATCGTCAGACGCCGGAAGCAAGCGGACGCCGCCTGTCCGCG
CTCGTGTCGCTCGCCGGCGTCGGCGCCGCGGCGACCCTGCTCGCACTCGC
CGTGGATGGTCGCAGCGTGCGTCTCGCGCCGCTCGCAGGATGGCTCGTGG
TCGTTGCGGGGCTGAACGTGGCCCGCAGCGTCGTCGGCATGCGCAGCATG
GAGCGCACTCGTCAGCAGCTCGACTGGTACATGACCCACGACCGTCTCAC
C
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