mRNA_P-wetherbeei_contig18485.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18485.1.1
Unique NamemRNA_P-wetherbeei_contig18485.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: UPI0015D4CCD2 (branched-chain amino acid ABC transporter permease n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D4CCD2)

HSP 1 Score: 193 bits (491), Expect = 6.540e-59
Identity = 98/157 (62.42%), Postives = 125/157 (79.62%), Query Frame = 1
Query:    4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
            FG+ V+ YRLF+I FG+A+S  LF  +E++ +G  VRA  +N  MA+C+GIDV R+RT VF +G ALA VGG VAGPLLP++L MG TIIIDCFVVV+IGGLGNIRGA++GAL++GM RA GQ +A DWI++ TY LL+ TL +RP+GLFNRR R A
Sbjct:  129 FGSQVSLYRLFVIGFGLAVSLALFLVLERSPLGTAVRACQANGGMAACVGIDVGRVRTAVFAIGAALAGVGGTVAGPLLPIQLQMGFTIIIDCFVVVIIGGLGNIRGAVLGALLVGMTRAYGQAYAPDWIDVATYTLLIATLLLRPQGLFNRRERLA 285          
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A1Y5RVW1_9PROT (High-affinity branched-chain amino acid transport system permease protein LivH n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5RVW1_9PROT)

HSP 1 Score: 191 bits (486), Expect = 3.720e-58
Identity = 95/158 (60.13%), Postives = 125/158 (79.11%), Query Frame = 1
Query:    1 VFGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
            + G+ V  YRLFII FG  ++AGLFF +E++R GM++RAAS +  M   LGI V+R+RT VF  G+ LAA+GG VA PLLP++LGMG ++IIDCF+VVVIGGLGNIRGA++GAL+IGM RALG  +A  W+  LT++LL+ TL +RPEGLF+R+GR A
Sbjct:  128 ILGSQVPTYRLFIIGFGALIAAGLFFMLERSRYGMVIRAASGDPEMVQTLGISVSRIRTFVFAFGSGLAALGGVVAAPLLPIELGMGFSVIIDCFIVVVIGGLGNIRGAVLGALLIGMTRALGYTYAPSWVEFLTFVLLIATLVLRPEGLFSRKGRAA 285          
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A418V1I1_RHOPL (Branched-chain amino acid ABC transporter permease n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A418V1I1_RHOPL)

HSP 1 Score: 185 bits (470), Expect = 9.700e-56
Identity = 90/157 (57.32%), Postives = 128/157 (81.53%), Query Frame = 1
Query:    4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
            FG  ++ YRLF++ FG A+   LFF IE+T++G+++RA+S+N+ MA  LG+DV R+RT +F +G ALA V GA+AGP+LP++L MG +II+DCF+VV+IGGLGNIRGA++GAL+IGM RA GQQ+A++WI++ TY +L+VTL VRP+GLF  R R +
Sbjct:  129 FGTDISKYRLFVVLFGAAMVVLLFFGIERTKLGLVLRASSNNAGMAEMLGVDVGRVRTALFALGAALAGVAGAIAGPMLPIQLQMGFSIILDCFIVVIIGGLGNIRGAVVGALLIGMTRAYGQQYAAEWIDIATYGVLVVTLLVRPQGLFGIRLRTS 285          
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A533J7S7_9BRAD (Branched-chain amino acid ABC transporter permease n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A533J7S7_9BRAD)

HSP 1 Score: 185 bits (469), Expect = 1.370e-55
Identity = 90/157 (57.32%), Postives = 126/157 (80.25%), Query Frame = 1
Query:    4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
            FG+ +  YRLFII FG  +S  LF  ++++++GM++RAASS+S MA  LG+DVAR+RT VF +G+ LAA+GG VA PL+P++LGMG ++IIDCFVVV+IGGLGNI+GAI  AL++GM RA G  +A +W+ ++T++LL+VTL  RP GLF+R+GR A
Sbjct:  129 FGSQIPSYRLFIIGFGALVSVLLFLLLDRSKLGMVIRAASSDSEMAQTLGVDVARVRTAVFALGSGLAALGGVVAAPLVPIELGMGFSVIIDCFVVVIIGGLGNIKGAIFAALLLGMARAAGFTYAPEWVELITFVLLIVTLLTRPSGLFSRKGRAA 285          
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A2S0NE28_9HYPH (Branched-chain amino acid ABC transporter permease n=1 Tax=Phreatobacter cathodiphilus TaxID=1868589 RepID=A0A2S0NE28_9HYPH)

HSP 1 Score: 184 bits (468), Expect = 1.940e-55
Identity = 90/157 (57.32%), Postives = 124/157 (78.98%), Query Frame = 1
Query:    4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
            FG+ +  YRLFII FG  +S  LF  +E++R+GM++RAASS++ MA  LGIDVA++RT VF +G  LAA+GG VA PL+P++LGMG ++IIDCFVVV+IGGLGNIRGAI+ AL++GM RA G  +A +W+ ++T++LL+ TL  RP G F+R+GR A
Sbjct:  129 FGSQIPSYRLFIIGFGATVSLALFLLLERSRLGMVIRAASSDADMAQTLGIDVAKVRTAVFALGAGLAALGGVVAAPLVPIELGMGFSVIIDCFVVVIIGGLGNIRGAILAALLLGMARAAGFTYAPEWVELITFVLLIATLLTRPAGFFSRKGRAA 285          
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A0A1PRN8_9BACT (High-affinity branched-chain amino acid transport system permease protein LivH n=2 Tax=Bacteria TaxID=2 RepID=A0A0A1PRN8_9BACT)

HSP 1 Score: 184 bits (466), Expect = 3.890e-55
Identity = 91/157 (57.96%), Postives = 127/157 (80.89%), Query Frame = 1
Query:    4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
            FG+ +  YRLFII FG A+SA LF  IEK+R G+++RA SS+S MA  LGI+V+R+RT VF +G  LAA+GG +A PL+P++LGMG ++IIDCFVVV+IGGLG+IRGA+  AL++GM RA+G  +A +W++++T++LL+VTL  RP GLF+R+GR A
Sbjct:  129 FGSQIPSYRLFIIVFGAAVSALLFVVIEKSRYGVMIRATSSDSDMAETLGINVSRVRTAVFALGAGLAALGGVIAAPLVPIELGMGFSVIIDCFVVVIIGGLGSIRGAVFAALLLGMARAVGFTYAPEWVDLITFMLLIVTLLTRPAGLFSRKGRAA 285          
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A2E2QQS3_9PROT (Branched-chain amino acid ABC transporter permease n=6 Tax=Sneathiella TaxID=510690 RepID=A0A2E2QQS3_9PROT)

HSP 1 Score: 182 bits (461), Expect = 2.210e-54
Identity = 94/157 (59.87%), Postives = 122/157 (77.71%), Query Frame = 1
Query:    4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
            FG+ V  YRLFII FGVA+SA LFF ++++R GMI+RAAS +  M   LGI+V+ +RT VF  G  LAA+GGA A PL P++LGMG  IIID F+VV+IGGLGNIRGA++ AL+IGM RALG  +A  W++ LT++LL+ TL +RPEGLF+R+GR A
Sbjct:  129 FGSSVPSYRLFIIGFGVAVSAALFFMLDRSRYGMIIRAASGDPEMVRTLGINVSLVRTGVFSFGAGLAALGGAAAAPLFPIELGMGFNIIIDSFIVVIIGGLGNIRGAVMAALLIGMTRALGYSYAPSWVDFLTFILLIGTLILRPEGLFSRKGRTA 285          
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A4Q3QMP5_9BURK (Branched-chain amino acid ABC transporter permease n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q3QMP5_9BURK)

HSP 1 Score: 179 bits (454), Expect = 2.450e-53
Identity = 89/157 (56.69%), Postives = 126/157 (80.25%), Query Frame = 1
Query:    4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
            FG+ V+ YR+F+I  G A  A L   IE++RIG+++R+ S++ +MA+ LG+ V R+RT VF VG ALA +GGA+AGP+LP++L MG TII+DCF+VV+IGGLGNIRGA++GAL+IGM RA GQQ+  +WI++LTY +L+ TL +RP+GLF+R+ R A
Sbjct:  128 FGSDVSRYRVFVIVVGAATMALLLLGIERSRIGLVIRSCSTHPLMAATLGVRVDRVRTGVFAVGAALAGLGGAMAGPMLPIQLQMGGTIILDCFIVVIIGGLGNIRGAVVGALMIGMTRAFGQQYLPEWIDILTYAVLIATLLLRPQGLFSRKERLA 284          
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: UPI0010409717 (branched-chain amino acid ABC transporter permease n=1 Tax=Paracoccus marinus TaxID=288426 RepID=UPI0010409717)

HSP 1 Score: 179 bits (453), Expect = 3.560e-53
Identity = 86/157 (54.78%), Postives = 125/157 (79.62%), Query Frame = 1
Query:    4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
            FG+++  YRLF+I FG A+S  LF  +++++ G+++RAAS+++ MA  LGIDV+R+RT VF +G  LAA+GGAV  PL+P++LGMG +IIIDCF+VV+IGGLGNIRGAI+ +L+IGM RA G  +A++W+ ++T+ LL+ TL  RP GLF+ +GR A
Sbjct:  129 FGSMIPSYRLFVIGFGAAVSLALFLLLDRSKWGIVIRAASADADMAQALGIDVSRVRTAVFALGAGLAAIGGAVTAPLVPIELGMGFSIIIDCFIVVIIGGLGNIRGAILASLLIGMARAAGYTYATEWVELITFALLIGTLMFRPAGLFSVKGRTA 285          
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Match: A0A853G8B4_9BURK (Branched-chain amino acid ABC transporter permease n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A853G8B4_9BURK)

HSP 1 Score: 173 bits (439), Expect = 4.460e-51
Identity = 84/157 (53.50%), Postives = 122/157 (77.71%), Query Frame = 1
Query:    4 FGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCLGIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVIGGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGLFNRRGREA 474
            F   ++ YRLF++  G   +A L F +E+T++G++VRA S+NS+MA+ LGI V R R +VF +G ALA   G + GP+LP++L MG++II+DCF+VV+IGGLGNIRGA+IGAL+IGM RA GQQ+ S+WI+++ Y +L+ TL +RP+GLF++R R A
Sbjct:  128 FSTELSRYRLFVVVVGATAAALLLFVVERTKLGLLVRACSANSMMAATLGIRVDRARALVFAIGAALAGFAGVITGPMLPIQLQMGNSIILDCFIVVIIGGLGNIRGAVIGALLIGMTRAYGQQYLSEWIDLIVYTVLISTLLLRPQGLFSKRERLA 284          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18485.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015D4CCD26.540e-5962.42branched-chain amino acid ABC transporter permease... [more]
A0A1Y5RVW1_9PROT3.720e-5860.13High-affinity branched-chain amino acid transport ... [more]
A0A418V1I1_RHOPL9.700e-5657.32Branched-chain amino acid ABC transporter permease... [more]
A0A533J7S7_9BRAD1.370e-5557.32Branched-chain amino acid ABC transporter permease... [more]
A0A2S0NE28_9HYPH1.940e-5557.32Branched-chain amino acid ABC transporter permease... [more]
A0A0A1PRN8_9BACT3.890e-5557.96High-affinity branched-chain amino acid transport ... [more]
A0A2E2QQS3_9PROT2.210e-5459.87Branched-chain amino acid ABC transporter permease... [more]
A0A4Q3QMP5_9BURK2.450e-5356.69Branched-chain amino acid ABC transporter permease... [more]
UPI00104097173.560e-5354.78branched-chain amino acid ABC transporter permease... [more]
A0A853G8B4_9BURK4.460e-5153.50Branched-chain amino acid ABC transporter permease... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18485contigP-wetherbeei_contig18485:866..1342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1298867.AUES01000061_gene4756
PFAMsBPD_transp_2
Model size477
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K01997
KEGG TC3.A.1.4
KEGG Pathwayko02010,ko02024,map02010,map02024
KEGG ModuleM00237
Hectar predicted targeting categorysignal anchor
Exons1
Evalue3.19e-56
EggNOG OGsCOG0559@1|root,COG0559@2|Bacteria,1MY1E@1224|Proteobacteria,2TSIQ@28211|Alphaproteobacteria,3JR6D@41294|Bradyrhizobiaceae
DescriptionBelongs to the binding-protein-dependent transport system permease family
Cds size477
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186147.4432356-CDS-P-wetherbeei_contig18485:865..13421683186147.4432356-CDS-P-wetherbeei_contig18485:865..1342Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18485 866..1342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18485.1.1prot_P-wetherbeei_contig18485.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18485 866..1342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18485.1.1

>prot_P-wetherbeei_contig18485.1.1 ID=prot_P-wetherbeei_contig18485.1.1|Name=mRNA_P-wetherbeei_contig18485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
VFGNIVTDYRLFIIAFGVALSAGLFFAIEKTRIGMIVRAASSNSVMASCL
GIDVARLRTVVFMVGTALAAVGGAVAGPLLPLKLGMGSTIIIDCFVVVVI
GGLGNIRGAIIGALIIGMVRALGQQFASDWINMLTYLLLLVTLAVRPEGL
FNRRGREA*
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mRNA from alignment at P-wetherbeei_contig18485:866..1342-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18485.1.1 ID=mRNA_P-wetherbeei_contig18485.1.1|Name=mRNA_P-wetherbeei_contig18485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig18485:866..1342- (Phaeothamnion wetherbeei SAG_119_79)
GTCTTCGGCAACATCGTAACAGACTACAGGCTTTTCATCATCGCGTTTGG TGTCGCACTCTCGGCCGGTCTGTTCTTCGCAATTGAAAAGACACGTATCG GCATGATCGTTCGCGCTGCAAGTTCGAACAGTGTCATGGCTTCCTGTCTG GGCATCGACGTGGCGCGGCTGCGCACGGTCGTATTCATGGTTGGTACCGC GTTGGCGGCGGTGGGCGGGGCCGTCGCCGGCCCGCTGCTGCCCCTGAAAC TCGGGATGGGAAGCACCATCATCATCGATTGCTTTGTGGTCGTCGTTATC GGCGGGCTAGGAAACATCAGAGGAGCGATCATCGGCGCGCTCATCATCGG CATGGTGCGAGCCCTCGGGCAGCAATTCGCGTCGGATTGGATCAACATGC TGACATATCTACTGCTGCTCGTCACGCTGGCTGTGCGCCCCGAAGGATTG TTCAACCGGCGAGGACGAGAAGCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18485:866..1342-

>mRNA_P-wetherbeei_contig18485.1.1 ID=mRNA_P-wetherbeei_contig18485.1.1|Name=mRNA_P-wetherbeei_contig18485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig18485:866..1342- (Phaeothamnion wetherbeei SAG_119_79)
GTCTTCGGCAACATCGTAACAGACTACAGGCTTTTCATCATCGCGTTTGG
TGTCGCACTCTCGGCCGGTCTGTTCTTCGCAATTGAAAAGACACGTATCG
GCATGATCGTTCGCGCTGCAAGTTCGAACAGTGTCATGGCTTCCTGTCTG
GGCATCGACGTGGCGCGGCTGCGCACGGTCGTATTCATGGTTGGTACCGC
GTTGGCGGCGGTGGGCGGGGCCGTCGCCGGCCCGCTGCTGCCCCTGAAAC
TCGGGATGGGAAGCACCATCATCATCGATTGCTTTGTGGTCGTCGTTATC
GGCGGGCTAGGAAACATCAGAGGAGCGATCATCGGCGCGCTCATCATCGG
CATGGTGCGAGCCCTCGGGCAGCAATTCGCGTCGGATTGGATCAACATGC
TGACATATCTACTGCTGCTCGTCACGCTGGCTGTGCGCCCCGAAGGATTG
TTCAACCGGCGAGGACGAGAAGCATGA
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