mRNA_P-wetherbeei_contig1847.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1847.5.1 vs. uniprot
Match: A0A836CKE0_9STRA (tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE0_9STRA) HSP 1 Score: 190 bits (482), Expect = 8.110e-51 Identity = 104/176 (59.09%), Postives = 120/176 (68.18%), Query Frame = 1
Query: 274 LGRPRYVAAPMVDQSELPFRLLVRRHGVGLCYTPMIHSPTFSQPSASIIRRNAYDGGPSLAADRPLIAQLCGNDGATLVAAGRYIEHDVDAIDLNLGCPQGIARKGSYGAYLLEQDGGRKAVGLVRAMAEGLRCPVTVKMRRLETAAATVELARRLEDAGAQVVTLHGRTLRQAKT 801
+G P YVAAPMV+QSE FRLL RRHG L YT M+H+ FS A+ R GG DRPLIAQ CGND LV A RY+EH V+A DLNLGCPQ IA+KG+YGAYLL Q G L+ AMA L CPVTVK+R L T TV+LA RLE AG Q++T+HGRT+R AKT
Sbjct: 5 IGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCC-GGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQ--GDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLITVHGRTVRSAKT 177
BLAST of mRNA_P-wetherbeei_contig1847.5.1 vs. uniprot
Match: D7G7Q4_ECTSI (Dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q4_ECTSI) HSP 1 Score: 192 bits (487), Expect = 7.800e-50 Identity = 98/188 (52.13%), Postives = 131/188 (69.68%), Query Frame = 1
Query: 244 EQQDLSLWDRLGRPRYVAAPMVDQSELPFRLLVRRHGVGLCYTPMIHSPTFSQPSASIIRRNAYDGGPSLAADRPLIAQLCGNDGATLVAAGRYIEHDVDAIDLNLGCPQGIARKGSYGAYLLEQDGGRKAVGLVRAMAEGLRCPVTVKMRRLETAAATVELARRLEDAGAQVVTLHGRTLRQAKTRQ 807
E + S ++++GRP+Y+AAPMV+QSE FR LVRRHG GL YT M+H+ F+ +A RR +DG DRPLI Q CGN+ T+V A R++EH DA+DLNLGCPQ IA+KG+YGAYLL + +V AM+ L PVTVK+R + + T++LARRLE AGAQ++T+HGRT+ KT+Q
Sbjct: 81 EAEPRSFFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDD-EEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNP--QLCEDIVAAMSRELSVPVTVKIRAQDRESDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQ 265
BLAST of mRNA_P-wetherbeei_contig1847.5.1 vs. uniprot
Match: A0A7S2DRC2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DRC2_9EUKA) HSP 1 Score: 181 bits (458), Expect = 5.980e-48 Identity = 101/203 (49.75%), Postives = 133/203 (65.52%), Query Frame = 1
Query: 193 LSLTERAAAGDDDGKSFEQQDLSLWDRLGRPRYVAAPMVDQSELPFRLLVRRHGVGLCYTPMIHSPTFSQPSASIIRRNAYDGGPSLAADRPLIAQLCGNDGATLVAAGRYIEHDVDAIDLNLGCPQGIARKGSYGAYLLEQDGGRKAVGLVRAMAEGLRCPVTVKMRRLETAAATVELARRLEDAGAQVVTLHGRTLRQAKT 801
L+ + +A+ D G + W RLG P+ V APMV+QSEL FRLL RRHG GLCYTPM+HS F+ A R +D P+ DRPL+AQ CG+D ATL+AA R+I+ DA+DLN GCPQ IA++G YGA+LL++ +VR + GL PV VK+R L + AT+ LARR+E AGA ++T+HGRT R+ KT
Sbjct: 42 LTSDDASASAADMGVTVPTP-WETWQRLGEPKLVLAPMVNQSELAFRLLARRHGAGLCYTPMLHSTRFAAEEA--YRVENFDDHPT---DRPLVAQFCGDDPATLLAAARHIQGRCDAVDLNCGCPQAIAKRGHYGAFLLDEP--ELIERIVRKLVSGLSVPVFVKIRVLPSWEATLGLARRIEAAGASLLTVHGRT-REQKT 235
BLAST of mRNA_P-wetherbeei_contig1847.5.1 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE) HSP 1 Score: 191 bits (484), Expect = 2.130e-46 Identity = 99/196 (50.51%), Postives = 134/196 (68.37%), Query Frame = 1
Query: 223 DDDGKSFEQQD-LSLWDRLGRPRYVAAPMVDQSELPFRLLVRRHGVGLCYTPMIHSPTFSQPSASIIRRNAYDGGPSLAADRPLIAQLCGNDGATLVAAGRYIEHDVDAIDLNLGCPQGIARKGSYGAYLLEQDGGRKAVGLVRAMAEGLRCPVTVKMRRLETAAATVELARRLEDAGAQVVTLHGRTLRQAKTRQ 807
++ G+ + D ++R+GRP+Y+AAPMV+QSE FR LVRRHG GL YT M+H+ F+ +A RR +DG DRPLI Q CGN+ T+V A R++EH DA+DLNLGCPQ IA+KG+YGAYLL + +V AM+ L PVTVK+R + + T++LARRLE AGAQ++T+HGRT+ KT+Q
Sbjct: 73 EEAGRERSEADPRGFFERIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDD-EEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNP--QLCEDIVAAMSRELSVPVTVKIRAQDKDSDTLDLARRLEGAGAQLLTVHGRTVSSQKTKQ 265
BLAST of mRNA_P-wetherbeei_contig1847.5.1 vs. uniprot
Match: A0A7S3S6E4_EMIHU (tRNA-dihydrouridine synthase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S6E4_EMIHU) HSP 1 Score: 176 bits (447), Expect = 1.470e-45 Identity = 93/181 (51.38%), Postives = 121/181 (66.85%), Query Frame = 1
Query: 262 LWDRLGRPRYVAAPMVDQSELPFRLLVRRHGVGLCYTPMIHSPTFSQPSASIIRRNAYDGGPSLAADRPLIAQLCGNDGATLVAAGRYIEHDVDAIDLNLGCPQGIARKGSYGAYLLEQDGGRKAVGLVRAMAEGLRCPVTVKMRRLETAAATVELARRLEDAGAQVVTLHGRTLRQAKTR 804
W +G PR+V APMVDQSE FR+L R GV L YTPM+H+ + A R + +D P DRPL+AQL G+D + L+AAGR ++ VDA+D+N GCPQGIARKG YGA+LL++ V LVRA+AEGL PVT K+R L + A+V L RR+++AGA + +HGRT Q K R
Sbjct: 29 FWRSIGSPRHVCAPMVDQSEAAFRVLTRSLGVQLAYTPMLHARLMVEAPA--YRAHTFDPEPD-GVDRPLVAQLAGHDASVLLAAGRLVQSHVDAVDINFGCPQGIARKGRYGAFLLDEP--ELTVSLVRALAEGLDVPVTAKVRLLPSVDASVALCRRMQEAGASALCVHGRTKEQNKHR 204
BLAST of mRNA_P-wetherbeei_contig1847.5.1 vs. uniprot
Match: R1DWJ5_EMIHU (Dus domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DWJ5_EMIHU) HSP 1 Score: 178 bits (451), Expect = 2.390e-45 Identity = 94/181 (51.93%), Postives = 122/181 (67.40%), Query Frame = 1
Query: 262 LWDRLGRPRYVAAPMVDQSELPFRLLVRRHGVGLCYTPMIHSPTFSQPSASIIRRNAYDGGPSLAADRPLIAQLCGNDGATLVAAGRYIEHDVDAIDLNLGCPQGIARKGSYGAYLLEQDGGRKAVGLVRAMAEGLRCPVTVKMRRLETAAATVELARRLEDAGAQVVTLHGRTLRQAKTR 804
W +G PR+V APMVDQSE FR+L R GV L YTPM+H+ + A R + +D P DRPL+AQL G+D + L+AAGR ++ VDA+D+N GCPQGIARKG YGA+LL++ AV LVRA+AEGL PVT K+R L + A+V L RR+++AGA + +HGRT Q K R
Sbjct: 8 FWRSIGSPRHVCAPMVDQSEAAFRVLTRSLGVQLAYTPMLHARLMVEAPA--YRAHTFDPEPD-GVDRPLVAQLAGHDASVLLAAGRLVQSHVDAVDINFGCPQGIARKGRYGAFLLDEP--ELAVSLVRALAEGLDVPVTAKVRLLPSVDASVALCRRMQEAGASALCVHGRTKEQNKHR 183
BLAST of mRNA_P-wetherbeei_contig1847.5.1 vs. uniprot
Match: A0A6A4IIS4_APOLU (Dus domain-containing protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4IIS4_APOLU) HSP 1 Score: 170 bits (431), Expect = 1.030e-43 Identity = 89/184 (48.37%), Postives = 116/184 (63.04%), Query Frame = 1
Query: 241 FEQQDLSLWDRLGRPRYVAAPMVDQSELPFRLLVRRHGVGLCYTPMIHSPTFSQPSASIIRRNAYDGGPSLAADRPLIAQLCGNDGATLVAAGRYIEHDVDAIDLNLGCPQGIARKGSYGAYLLEQDGGRKAVGLVRAMAEGLRCPVTVKMRRLETAAATVELARRLEDAGAQVVTLHGRTLRQ 792
+ LWDRLGRPR+V APMVD SEL +RLL R HG LCY+PM HS F++ S RR A P ADRPLI Q CGN ++ A + E DAID+NLGCPQ IA++G+YG++L QD +VR +++ L+ PVT K+R E+ TV+ A+ LE AG ++T+HGRT Q
Sbjct: 21 MSEDGTELWDRLGRPRFVVAPMVDASELAWRLLCRAHGAQLCYSPMFHSTIFTKDSR--YRREALASSP---ADRPLIIQFCGNKANVILEAAKLAEPFCDAIDINLGCPQAIAKRGNYGSFL--QDDWDNLTDIVRTLSQNLKVPVTCKIRVFESVEKTVQYAQMLESAGCSMLTVHGRTREQ 197
BLAST of mRNA_P-wetherbeei_contig1847.5.1 vs. uniprot
Match: A0A7S2C8F7_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8F7_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.090e-43 Identity = 101/206 (49.03%), Postives = 128/206 (62.14%), Query Frame = 1
Query: 199 LTERAAAGDDDGKSFEQQDLSLWDRLGRPRYVAAPMVDQSELPFRLLVRRHGVGLCYTPMIHSPTFSQPSASIIRRNAYDG------GPSLAADRPLIAQLCGNDGATLVAAGRYIEHDVDAIDLNLGCPQGIARKGSYGAYLLEQDGGRKAVGLVRAMAEGLRCPVTVKMRRLETAAATVELARRLEDAGAQVVTLHGRTLRQAK 798
L RA A DG F + RLG P++VAAPMV QS+L FRLLVRRHG L +T M+H+ F+ + R + +DG DRPLIAQ CGND T+V A YI+ VDAIDLNLGCPQ IA+KG YGA+LL + +++ V MA L P+TVK+R L T TV+ A L+DAGA +VT+HGRT++Q K
Sbjct: 44 LAARADAQPTDGSPFLE-------RLGHPKFVAAPMVGQSDLAFRLLVRRHGADLAFTQMLHAKNFA--TVPRYREDNFDGFLRDDQSTYAMEDRPLIAQFCGNDPGTVVEAASYIQDHVDAIDLNLGCPQKIAKKGRYGAFLLSEPVLVRSI--VERMATSLDVPITVKIRMLPTKEETVQFACMLQDAGAAMVTVHGRTVKQNK 238
BLAST of mRNA_P-wetherbeei_contig1847.5.1 vs. uniprot
Match: A0A8J5XD11_DIALT (Dus domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XD11_DIALT) HSP 1 Score: 171 bits (434), Expect = 5.900e-43 Identity = 97/194 (50.00%), Postives = 124/194 (63.92%), Query Frame = 1
Query: 265 WDRLGR-PRYVAAPMVDQSELPFRLLVRRHGVGLCYTPMIHSPTFSQPSASIIRRNAYDGGPSL------AADRPLIAQLCGNDGATLVAAGRYIEHDVDAIDLNLGCPQGIARKGSYGAYLLEQDGGRKAVGLVRAMAEGLRCPVTVKMRRL------ETAAATVELARRLEDAGAQVVTLHGRTLRQAKTRQ 807
WD LG P+Y PMVD SELPFRLL RRHG L YTPM+H+ F+ ++ +R A+DG P+ ADRPL+ Q G D AT++AA R++E VD +DLN GCPQ IA +G+YGA+LLE+D VGLVR +A GLR P++VK+R + + A TVEL RLE AG ++ LHGRT Q Q
Sbjct: 18 WDALGPGPKYAVGPMVDHSELPFRLLCRRHGATLAYTPMLHAAQFA--TSRKVRARAFDGWPAAPSAAPGGADRPLLVQFAGCDAATILAAARHVEGCVDGVDLNFGCPQRIAHRGAYGAFLLERDW-EWLVGLVREVACGLRVPLSVKLRLVMDERGEPSTARTVELCTRLERAGVALIALHGRTRLQINRLQ 208
BLAST of mRNA_P-wetherbeei_contig1847.5.1 vs. uniprot
Match: A0A7S1N6C9_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N6C9_9EUGL) HSP 1 Score: 163 bits (412), Expect = 1.930e-42 Identity = 90/169 (53.25%), Postives = 111/169 (65.68%), Query Frame = 1
Query: 274 LGRPRYVAAPMVDQSELPFRLLVRRHGVGLCYTPMIHSPTFSQPSASIIRRNAYDGGPSLAADRPLIAQLCGNDGATLVAAGRYIEHDVDAIDLNLGCPQGIARKGSYGAYLLEQDGGRKAVGLVRAMAEGLRCPVTVKMRRLETAAATVELARRLEDAGAQVVTLHGR 780
LG PR+V APMVDQSELPFR+L RRHGV LCYTPM+H+ F+ S R + + + AADRPL+ Q C ND L+ A R +E DA+DLNLGCPQ IA++G YGAYL QD LV + L+ PVT K+R LET TV AR L+ AG Q++T+HGR
Sbjct: 35 LGSPRHVMAPMVDQSELPFRMLGRRHGVHLCYTPMLHAAMFN--SNEKYREDMFT---TCAADRPLVVQFCANDPDVLLEAARRVEGACDAVDLNLGCPQAIAKQGHYGAYL--QDEWDLVARLVSTLHRHLKVPVTCKIRILETVERTVAYARTLQAAGCQLLTVHGR 196 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1847.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1847.5.1 >prot_P-wetherbeei_contig1847.5.1 ID=prot_P-wetherbeei_contig1847.5.1|Name=mRNA_P-wetherbeei_contig1847.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=245bp MVESLTAFMLLLVFCQGRAYRPLPRVWATGRRSTHLSLTERAAAGDDDGKback to top mRNA from alignment at P-wetherbeei_contig1847:3431..6562- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1847.5.1 ID=mRNA_P-wetherbeei_contig1847.5.1|Name=mRNA_P-wetherbeei_contig1847.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3132bp|location=Sequence derived from alignment at P-wetherbeei_contig1847:3431..6562- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1847:3431..6562- >mRNA_P-wetherbeei_contig1847.5.1 ID=mRNA_P-wetherbeei_contig1847.5.1|Name=mRNA_P-wetherbeei_contig1847.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=735bp|location=Sequence derived from alignment at P-wetherbeei_contig1847:3431..6562- (Phaeothamnion wetherbeei SAG_119_79)back to top |