mRNA_P-wetherbeei_contig18453.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18453.1.1
Unique NamemRNA_P-wetherbeei_contig18453.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18453.1.1 vs. uniprot
Match: D7FVQ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVQ1_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.670e-30
Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  238 VLRSVWEGILFEYLRAAGHPLRGVGLDPRHFVLRHWRRSLLEPGGATVGLKLAVARRIRPRGPFASEDADVAAVRAAVGRREVAAKAAERTLRDGTDYRNVLEYLAAAGNLHAEAVRGVDYLSAEVETARARLDHSAESGLALQAQLLEAEDRLEAAAGALVH 726
            VL+  WEG+LFEYLR  G PLR    DPRHFV+R+WRRS+L+P      +     R ++ R     E+ D+  +RA +  RE   K AE   R+  DYR VL+Y +A+ +LH   V  V+YL+ EVE  RA +DHS+ES   ++ Q +E E + +   G LVH
Sbjct:  100 VLKFCWEGLLFEYLRTVGCPLRDREHDPRHFVMRYWRRSMLDPSVRPGFVPFYAKREVKKRNSLMQEERDIRNIRAGLALREDVVKDAENKTREQHDYRFVLQYFSASRDLHRTLVANVNYLANEVEQLRANMDHSSESISIMEQQFVELETKYDQVVGGLVH 262          
BLAST of mRNA_P-wetherbeei_contig18453.1.1 vs. uniprot
Match: F0YAF5_AURAN (WW domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAF5_AURAN)

HSP 1 Score: 100 bits (249), Expect = 2.560e-20
Identity = 60/135 (44.44%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  241 LRSVWEGILFEYLRAAGHPLRGVGLDPRHFVLRHWR-RSLLEPGGATVGLKLAVARRIRPRGPFASEDADVAAVRAAVGRREVAAKAAERTLRDGTDYRNVLEYLAAAGNLHAEAVRGVDYLSAEVETARARLDH 642
            L  +W+GILFEYLRA G PLR   +DPR F L+ WR R+    GG  V     V R IR RG  A   AD+  +   V  +E+A K  E  +R  +DYRNV+ +LA   +LH       DYL  E+E AR R+DH
Sbjct:  107 LAMMWDGILFEYLRAEGMPLRSARIDPRVFTLQLWRKRAAFNSGGNVVFRPHYVPRHIRRRGKGAPRAADLEGILRGVEAKELAVKHVENKIRKESDYRNVIRFLADTTSLHEFERDARDYLMHELEAARDRIDH 241          
BLAST of mRNA_P-wetherbeei_contig18453.1.1 vs. uniprot
Match: A0A836CGG2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 9.190e-19
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 1
Query:  235 KVLRSVWEGILFEYLRAAGHPLRGVGLDPRHFVLRHWRRSLLEPGGATVGLKLAVARRIRPRGPFA-SEDADVAAVRAAVGRREVAAKAAERTLRDGTDYRNVLEYLAAAGNLHAEA 582
            +VLR VWEG+LFEYLR+ G P+     DPR +VL++WRRS  +P GA   +   + RR+  R      ED DV  VRA +   EVA K AE  +R   DYR++L Y +A  +LH EA
Sbjct:  102 EVLRFVWEGLLFEYLRSVGCPVFTAERDPRIYVLKYWRRSTTDPRGAASFVPYYLERRVYARADGQPEEDPDVGEVRARIMGAEVAVKEAEALVRASRDYRHILTYFSATADLHREA 218          
BLAST of mRNA_P-wetherbeei_contig18453.1.1 vs. uniprot
Match: A0A8J2WS82_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WS82_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.040e-18
Identity = 61/151 (40.40%), Postives = 82/151 (54.30%), Query Frame = 1
Query:  241 LRSVWEGILFEYLRAAGHPLRGVGLDPRHFVLRHWRR-SLLEPGGATVGLKLAVARRIRPRGPFASEDADVAAVRAAVGRREVAAKAAERTLRDGTDYRNVLEYLAAAGNLHAEAVRGVDYLSAEVETARARLDHSAESGLALQAQLLEAE 690
            L ++W+GIL+EYLRA G PLR   +DPR F L+ WRR +    GG  +     V R +R R       AD+  +   V  +E+A K  ER +R  +DYRNV+ +LA   +LH       DYL  E+E+ R R+DH   S      QL EAE
Sbjct:  188 LETMWDGILYEYLRAEGQPLRSARVDPRVFTLQMWRRRAAFSQGGQGIFRPHYVPRMVRMRDQKPPRAADLEGLLRGVEAKELALKHIERKVRKESDYRNVIRFLADTTSLHEFERDARDYLMHELESCRDRIDHYQASLEMTGEQLGEAE 338          
BLAST of mRNA_P-wetherbeei_contig18453.1.1 vs. uniprot
Match: A0A7S1XJ94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJ94_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.530e-14
Identity = 55/163 (33.74%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  226 DLRKVLRSVWEGILFEYLRAAGHPLRGVGLDPRHFVLRHWRRSLLEPGGATVGLKLAVARRIR---PRGPFASEDADVAAVRAAVGRREVAAKAAERTLRDGTDYRNVLEYLAAAGNLHAEAVRGVDYLSAEVETARARLDHSAESGLALQAQLLEAEDRLEA 705
            +  +VL+ VWEG+LFEYLR+ G PL    LDPR FV R+W++   +P      +     R +R     G +  +D ++  V   V  +E+  K  E  +R   DYR++L +L A   L        DYL  +VE  R+   H   S   ++ Q  E E RL A
Sbjct:  108 NYHEVLKVVWEGVLFEYLRSVGQPLHSNHLDPRTFVARYWKKRATDPKNRLF-VPYYTGREVRNCHENGDYKDDDLEM--VLDDVETKEITVKKMETIMRKERDYRHILNFLNAVKELRDAEKSHRDYLILQVEKLRSVHGHWISSQKIMEEQTEELEQRLAA 267          
BLAST of mRNA_P-wetherbeei_contig18453.1.1 vs. uniprot
Match: A0A7S4DIU4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIU4_HETAK)

HSP 1 Score: 58.5 bits (140), Expect = 3.860e-7
Identity = 44/121 (36.36%), Postives = 60/121 (49.59%), Query Frame = 1
Query:  403 RRIRPRGPFASEDADVAAVRAAVGRREVAAKAAERTLRDGTDYRNVLEYLAAAGNLHAEAVRGVDYLSAEVETARARLDHSAESGLALQAQLLEAEDRLEA------AAGALVHGAAADTV 747
            R+   R      D D+  +   +  +E+A K AE+ LR   DYR VL Y  A   LH    RG+D+++AE E  RAR++H  ++      QL E E R E       A GA   GA ADT+
Sbjct:    3 RKFEVRSGRPRHDRDIGKIVEEIAGKEIAVKQAEQCLRRENDYRFVLRYFTAVNELHDAQKRGMDFMTAEAEMLRARMEHCEQNFSVTAEQLEELEYRHEVLKDRFVARGAF-EGALADTL 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18453.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FVQ1_ECTSI1.670e-3042.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0YAF5_AURAN2.560e-2044.44WW domain-containing protein n=1 Tax=Aureococcus a... [more]
A0A836CGG2_9STRA9.190e-1946.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2WS82_9STRA2.040e-1840.40Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S1XJ94_9STRA7.530e-1433.74Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4DIU4_HETAK3.860e-736.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18453contigP-wetherbeei_contig18453:2..983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009037371.1
PFAMsExo_endo_phos
Model size769
Max annot lvl2759|Eukaryota
KEGG koko:K19612
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.02e-22
EggNOG OGsCOG5239@1|root,KOG0620@2759|Eukaryota
EC3.1.13.4
Descriptionpoly(A)-specific ribonuclease activity
Cds size582
COG categoryA
BRITEko00000,ko01000,ko03019,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186146.421831-UTR-P-wetherbeei_contig18453:1..1871683186146.421831-UTR-P-wetherbeei_contig18453:1..187Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18453 2..187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186146.4322546-CDS-P-wetherbeei_contig18453:187..2381683186146.4322546-CDS-P-wetherbeei_contig18453:187..238Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18453 188..238 +
1683186146.4414866-CDS-P-wetherbeei_contig18453:338..4741683186146.4414866-CDS-P-wetherbeei_contig18453:338..474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18453 339..474 +
1683186146.450581-CDS-P-wetherbeei_contig18453:511..5401683186146.450581-CDS-P-wetherbeei_contig18453:511..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18453 512..540 +
1683186146.459637-CDS-P-wetherbeei_contig18453:617..9831683186146.459637-CDS-P-wetherbeei_contig18453:617..983Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18453 618..983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18453.1.1prot_P-wetherbeei_contig18453.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18453 188..983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18453.1.1

>prot_P-wetherbeei_contig18453.1.1 ID=prot_P-wetherbeei_contig18453.1.1|Name=mRNA_P-wetherbeei_contig18453.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp
MEMSPPHFLLSVPDLRKVLRSVWEGILFEYLRAAGHPLRGVGLDPRHFVL
RHWRRSLLEPGGATVGLKLAVARRIRPRGPFASEDADVAAVRAAVGRREV
AAKAAERTLRDGTDYRNVLEYLAAAGNLHAEAVRGVDYLSAEVETARARL
DHSAESGLALQAQLLEAEDRLEAAAGALVHGAAADTVAARAMVG
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mRNA from alignment at P-wetherbeei_contig18453:2..983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18453.1.1 ID=mRNA_P-wetherbeei_contig18453.1.1|Name=mRNA_P-wetherbeei_contig18453.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=982bp|location=Sequence derived from alignment at P-wetherbeei_contig18453:2..983+ (Phaeothamnion wetherbeei SAG_119_79)
TGCGCTTTGTTTGATGCGGTTGGATGGCTTTCTTGCGGTACCTTTTTTCC TCGGCAGCAGAGATATGCCGCCAGCATCCACGGTTAAGTTTAGCATCGTC TCTTGATACTGCGGCTCACTCACCTGTTCGTATCACTGACACTCCCTTTG TAAGCACGATCTGCTGTGCTTCCTGGAAAAAGCTACATGGAAATGTCGCC CCCTCATTTCCTCCTCAGCGTTCCCGACTTAAGAAAGGTTTGTTTGTGCT TTCTTCTTCCTTGGTTCATCAAACTTTGGGATGCAACCTGGTTGTTCTCG TGCTTATTTCCCCATCTGCTTTCATACCCGTCGACAGGTGTTGCGCTCCG TTTGGGAGGGAATCCTGTTTGAGTATCTCCGCGCAGCGGGCCACCCGCTC AGAGGAGTCGGCCTCGACCCGCGACACTTTGTGCTGCGCCACTGGCGCCG CAGCCTGCTGGAGCCCGGCGGCGGTGGAGCAAGCAGTAGTGGCGGCGGCG GCGCCAACAGCTACGGTAGGATTAAAGCTAGCGGTGGCAGTGGTTCGGGC GGCGGCGACGATCCCAGCGGCGGCCGGGCGGGGGATGGCGGCTCCTTCGT CGGCTACTATGTGCAGCGCCGCATCCGCCCGCGGGGGCCGTTCGCGTCGG AGGACGCCGACGTGGCGGCGGTGAGGGCTGCGGTCGGCCGCCGAGAGGTC GCCGCAAAGGCCGCCGAGCGGACCCTGCGGGATGGCACGGACTACCGGAA CGTGCTCGAGTACCTGGCGGCGGCGGGGAACCTGCATGCCGAGGCAGTCC GCGGAGTGGATTATCTGTCGGCGGAGGTGGAAACCGCCCGGGCTCGGCTG GACCACAGCGCCGAGAGTGGGCTGGCGTTGCAAGCGCAGCTGTTGGAGGC GGAGGACCGGCTGGAGGCGGCGGCGGGCGCCCTGGTGCACGGCGCCGCCG CCGACACTGTCGCGGCGCGGGCCATGGTCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18453:2..983+

>mRNA_P-wetherbeei_contig18453.1.1 ID=mRNA_P-wetherbeei_contig18453.1.1|Name=mRNA_P-wetherbeei_contig18453.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig18453:2..983+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAATGTCGCCCCCTCATTTCCTCCTCAGCGTTCCCGACTTAAGAAA
GGTGTTGCGCTCCGTTTGGGAGGGAATCCTGTTTGAGTATCTCCGCGCAG
CGGGCCACCCGCTCAGAGGAGTCGGCCTCGACCCGCGACACTTTGTGCTG
CGCCACTGGCGCCGCAGCCTGCTGGAGCCCGGCGGCGCTACGGTAGGATT
AAAGCTAGCGGTGGCACGCCGCATCCGCCCGCGGGGGCCGTTCGCGTCGG
AGGACGCCGACGTGGCGGCGGTGAGGGCTGCGGTCGGCCGCCGAGAGGTC
GCCGCAAAGGCCGCCGAGCGGACCCTGCGGGATGGCACGGACTACCGGAA
CGTGCTCGAGTACCTGGCGGCGGCGGGGAACCTGCATGCCGAGGCAGTCC
GCGGAGTGGATTATCTGTCGGCGGAGGTGGAAACCGCCCGGGCTCGGCTG
GACCACAGCGCCGAGAGTGGGCTGGCGTTGCAAGCGCAGCTGTTGGAGGC
GGAGGACCGGCTGGAGGCGGCGGCGGGCGCCCTGGTGCACGGCGCCGCCG
CCGACACTGTCGCGGCGCGGGCCATGGTCGGG
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