mRNA_P-wetherbeei_contig18450.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18450.1.1
Unique NamemRNA_P-wetherbeei_contig18450.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18450.1.1 vs. uniprot
Match: A0A0S4IU42_BODSA (FYVE-type domain-containing protein (Fragment) n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4IU42_BODSA)

HSP 1 Score: 52.4 bits (124), Expect = 1.140e-6
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 CALCAATFTLFRREHHCRLCSIRVCGTCSSKTV 99
            C++CA+TFT+ RR HHCRLC   VCG CS  T+
Sbjct:  108 CSICASTFTVLRRRHHCRLCGALVCGACSPHTI 140
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BLAST of mRNA_P-wetherbeei_contig18450.1.1 vs. uniprot
Match: A0A482RXE5_9ARCH (FYVE-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXE5_9ARCH)

HSP 1 Score: 48.1 bits (113), Expect = 4.020e-6
Identity = 19/31 (61.29%), Postives = 22/31 (70.97%), Query Frame = 1 
Query:    1 CALCAATFTLFRREHHCRLCSIRVCGTCSSK 93
            C LC+  FT+FRR HHCRLC+I  C  CS K
Sbjct:   36 CRLCSVPFTMFRRNHHCRLCNILCCDDCSKK 66
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BLAST of mRNA_P-wetherbeei_contig18450.1.1 vs. uniprot
Match: A0A2D4BPC9_PYTIN (FYVE-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPC9_PYTIN)

HSP 1 Score: 48.9 bits (115), Expect = 1.910e-5
Identity = 18/29 (62.07%), Postives = 23/29 (79.31%), Query Frame = 1 
Query:    1 CALCAATFTLFRREHHCRLCSIRVCGTCS 87
            CALCA +F LF+R+HHCR+C + VC  CS
Sbjct:  296 CALCAQSFKLFKRQHHCRICGVSVCSKCS 324
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BLAST of mRNA_P-wetherbeei_contig18450.1.1 vs. uniprot
Match: A0A1V9YB14_9STRA (FYVE-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YB14_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 20/29 (68.97%), Postives = 21/29 (72.41%), Query Frame = 1 
Query:    1 CALCAATFTLFRREHHCRLCSIRVCGTCS 87
            C  C ATF LFRR HHCRLC   VCG+CS
Sbjct:  299 CTQCTATFRLFRRRHHCRLCGGAVCGSCS 327
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BLAST of mRNA_P-wetherbeei_contig18450.1.1 vs. uniprot
Match: W4FUH5_9STRA (FYVE-type domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FUH5_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 4.900e-5
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:    1 CALCAATFTLFRREHHCRLCSIRVCGTCSSKTVAVAAGGDAVR 129
            C+ C  TFT+FRR HHCRLC+  VC  CS+  +   A   +VR
Sbjct:  294 CSTCLKTFTMFRRRHHCRLCTGAVCNVCSTNVMVGTAERRSVR 336
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BLAST of mRNA_P-wetherbeei_contig18450.1.1 vs. uniprot
Match: A0A3R7A734_9STRA (FYVE-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A734_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 4.900e-5
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:    1 CALCAATFTLFRREHHCRLCSIRVCGTCSSKTVAVAAGGDAVR 129
            C+ C  TFTLFRR HHCRLC+  +C  CS+  +  A    +VR
Sbjct:  132 CSTCLKTFTLFRRRHHCRLCTGAICNVCSTTVMLGAVERKSVR 174
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BLAST of mRNA_P-wetherbeei_contig18450.1.1 vs. uniprot
Match: A0A397B2D0_9STRA (FYVE-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B2D0_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 4.900e-5
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:    1 CALCAATFTLFRREHHCRLCSIRVCGTCSSKTVAVAAGGDAVR 129
            C+ C  TFT+FRR HHCRLC+  VC  CS+  +   A   +VR
Sbjct:  283 CSTCLKTFTMFRRRHHCRLCTGAVCNVCSTNVMVGTAERRSVR 325
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BLAST of mRNA_P-wetherbeei_contig18450.1.1 vs. uniprot
Match: A0A485LUX0_9STRA (Aste57867_25202 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LUX0_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 6.710e-5
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    1 CALCAATFTLFRREHHCRLCSIRVCGTCSSKTVAVAAGGDAVR 129
            C++C  TF +FRR HHCRLC+  +C  CS+  +  +A   AVR
Sbjct:  299 CSICLKTFGMFRRRHHCRLCTGAICNVCSTTVLVGSADRRAVR 341
[Close]
BLAST of mRNA_P-wetherbeei_contig18450.1.1 vs. uniprot
Match: A0A397DTM1_9STRA (FYVE-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DTM1_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 9.180e-5
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 1 
Query:    1 CALCAATFTLFRREHHCRLCSIRVCGTCSSKTV 99
            C+ C  TFT+FRR HHCRLC+  VC  CS+  +
Sbjct:  283 CSTCLKTFTMFRRRHHCRLCTGAVCNVCSTNVM 315
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18450.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A0S4IU42_BODSA1.140e-660.61FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A482RXE5_9ARCH4.020e-661.29FYVE-type domain-containing protein n=1 Tax=archae... [more]
A0A2D4BPC9_PYTIN1.910e-562.07FYVE-type domain-containing protein n=1 Tax=Pythiu... [more]
A0A1V9YB14_9STRA2.620e-568.97FYVE-type domain-containing protein n=1 Tax=Achlya... [more]
W4FUH5_9STRA4.900e-548.84FYVE-type domain-containing protein n=7 Tax=Aphano... [more]
A0A3R7A734_9STRA4.900e-548.84FYVE-type domain-containing protein n=1 Tax=Aphano... [more]
A0A397B2D0_9STRA4.900e-548.84FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A485LUX0_9STRA6.710e-546.51Aste57867_25202 protein n=1 Tax=Aphanomyces stella... [more]
A0A397DTM1_9STRA9.180e-554.55FYVE-type domain-containing protein n=2 Tax=Aphano... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18450contigP-wetherbeei_contig18450:315..443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008604191.1
PFAMsFYVE
Model size129
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.99e-08
EggNOG OGs28TAI@1|root,2R00X@2759|Eukaryota
DescriptionFYVE zinc finger
Cds size129
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186146.3895504-CDS-P-wetherbeei_contig18450:314..4431683186146.3895504-CDS-P-wetherbeei_contig18450:314..443Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18450 315..443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18450.1.1prot_P-wetherbeei_contig18450.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18450 315..443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18450.1.1

>prot_P-wetherbeei_contig18450.1.1 ID=prot_P-wetherbeei_contig18450.1.1|Name=mRNA_P-wetherbeei_contig18450.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=43bp
CALCAATFTLFRREHHCRLCSIRVCGTCSSKTVAVAAGGDAVR
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mRNA from alignment at P-wetherbeei_contig18450:315..443-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18450.1.1 ID=mRNA_P-wetherbeei_contig18450.1.1|Name=mRNA_P-wetherbeei_contig18450.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig18450:315..443- (Phaeothamnion wetherbeei SAG_119_79)
TGCGCGCTTTGCGCCGCGACTTTTACGCTGTTCCGGCGGGAGCACCACTG
CCGCCTGTGCAGCATCCGCGTGTGCGGCACATGCTCGAGCAAGACCGTCG
CAGTGGCCGCTGGCGGCGACGCGGTCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18450:315..443-

>mRNA_P-wetherbeei_contig18450.1.1 ID=mRNA_P-wetherbeei_contig18450.1.1|Name=mRNA_P-wetherbeei_contig18450.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig18450:315..443- (Phaeothamnion wetherbeei SAG_119_79)
TGCGCGCTTTGCGCCGCGACTTTTACGCTGTTCCGGCGGGAGCACCACTG
CCGCCTGTGCAGCATCCGCGTGTGCGGCACATGCTCGAGCAAGACCGTCG
CAGTGGCCGCTGGCGGCGACGCGGTCCGG
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