mRNA_P-wetherbeei_contig18369.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18369.1.1
Unique NamemRNA_P-wetherbeei_contig18369.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18369.1.1 vs. uniprot
Match: A0A7X8XL73_9BURK (Peptidoglycan DD-metalloendopeptidase family protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XL73_9BURK)

HSP 1 Score: 143 bits (360), Expect = 1.070e-38
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 1 
Query:    1 IERRLYPGACITAGFYDFRTVSQYRSHAGLHLGYDIAMPPGNQVACGWGGIVTSVVVWSGLEHGITVVSPDGTHVTYGHLSPRVKVGAVLKPGDIVGVIVRDHVDVKMRDAAGNYKDFG 357
            ++R L P A +T+GFYD+RTVS+YR + GLHLGYDIAMP G  V  GW G V SV  W+  E G+TV S  GT VTYGH+ P +  G  ++ G IVG I  DHVDVKMRD+AGNY DFG
Sbjct:   64 LQRTLCPEAVLTSGFYDWRTVSRYRRNPGLHLGYDIAMPAGTPVRAGWPGTVVSVAPWTEGEWGLTVRSASGTEVTYGHIRPSLSAGDPVQVGTIVGTISIDHVDVKMRDSAGNYVDFG 182
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BLAST of mRNA_P-wetherbeei_contig18369.1.1 vs. uniprot
Match: A0A7Z9PU69_9BACT (M23 family metallopeptidase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PU69_9BACT)

HSP 1 Score: 127 bits (318), Expect = 4.420e-34
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:   22 GACITAGFYDFRTVSQYRSHAGLHLGYDIAMPPGNQVACGWGGIVTSVVVWSGLEHGITVVSPDGTHVTYGHLSPRVKVGAVLKPGDIVGVIVRDHVDVKMRDAAGNYKDF 354
            GA +++GF+D+RTVS+YRS AG+H GYDIAM  G +V   W G V ++  W G E+G+TV S  G   TYGH+SP V+VG  +K GD++G +V DHVDVK+RD  G+  DF
Sbjct:   33 GAFVSSGFHDWRTVSKYRSRAGIHGGYDIAMLAGTEVRAAWSGEVVAISRWYGSEYGVTVRSSTGHEATYGHISPLVRVGEAVKSGDVLGTVVVDHVDVKVRDRFGSLVDF 143
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BLAST of mRNA_P-wetherbeei_contig18369.1.1 vs. uniprot
Match: A0A1V5PAJ0_9BACT (Peptidase family M23 n=1 Tax=bacterium ADurb.Bin363 TaxID=1866927 RepID=A0A1V5PAJ0_9BACT)

HSP 1 Score: 129 bits (323), Expect = 6.500e-33
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = 1 
Query:    1 IERRLYPGACITAGFYDFRTVSQYRSHAGLHLGYDIAMPPGNQVACGWGGIVTSVVVWSGLEHGITVVSPDGTHVTYGHLSPRVKVGAVLKPGDIVGVIVRDHVDVKMRDAAGNYKDFG 357
            I +++YP A I+  FY++R +S+YR  AGLH GYDIA+P G  V  GW G V  +  W G E+G+TV S    +VTYGH+ P VK G  +  G I+G +V DHVD+KM+D+  NY DFG
Sbjct:  101 IVKKIYPSAVISGTFYEWRDISKYRRVAGLHDGYDIALPSGTPVVAGWEGEVVDICPWYGQEYGVTVKSTGDIYVTYGHIVPMVKTGQKIMIGSIIGFVVIDHVDIKMKDSKNNYIDFG 219
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BLAST of mRNA_P-wetherbeei_contig18369.1.1 vs. uniprot
Match: A0A7Z9UDN3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UDN3_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 6.250e-24
Identity = 43/79 (54.43%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 IERRLYPGACITAGFYDFRTVSQYRSHAGLHLGYDIAMPPGNQVACGWGGIVTSVVVWSGLEHGITVVSPDGTHVTYGH 237
            ++++ +P A I++ FYD+RT S+YR  AGLHLGYDIA+P G +V+ GW G V ++V W+  E+G+TV S DGT VTYGH
Sbjct:   70 LQQKNWPAAWISSTFYDYRTTSKYRRQAGLHLGYDIALPFGARVSTGWPGRVVAIVPWTDTEYGVTVASADGTEVTYGH 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18369.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7X8XL73_9BURK1.070e-3858.82Peptidoglycan DD-metalloendopeptidase family prote... [more]
A0A7Z9PU69_9BACT4.420e-3453.15M23 family metallopeptidase n=1 Tax=Phycisphaerale... [more]
A0A1V5PAJ0_9BACT6.500e-3349.58Peptidase family M23 n=1 Tax=bacterium ADurb.Bin36... [more]
A0A7Z9UDN3_9BACT6.250e-2454.43Uncharacterized protein (Fragment) n=1 Tax=Phycisp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18369contigP-wetherbeei_contig18369:680..1036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog545243.BAEV01000001_gene3233
PFAMsPeptidase_M23
Model size357
Max annot lvl186801|Clostridia
KEGG koko:K21471
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000549
EggNOG OGsCOG0739@1|root,COG0739@2|Bacteria,1VAC5@1239|Firmicutes,25E3G@186801|Clostridia,36UHD@31979|Clostridiaceae
DescriptionPeptidase family M23
Cds size357
COG categoryM
BRITEko00000,ko01000,ko01002,ko01011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186144.0594604-CDS-P-wetherbeei_contig18369:679..10361683186144.0594604-CDS-P-wetherbeei_contig18369:679..1036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18369 680..1036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18369.1.1prot_P-wetherbeei_contig18369.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18369 680..1036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18369.1.1

>prot_P-wetherbeei_contig18369.1.1 ID=prot_P-wetherbeei_contig18369.1.1|Name=mRNA_P-wetherbeei_contig18369.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
IERRLYPGACITAGFYDFRTVSQYRSHAGLHLGYDIAMPPGNQVACGWGG
IVTSVVVWSGLEHGITVVSPDGTHVTYGHLSPRVKVGAVLKPGDIVGVIV
RDHVDVKMRDAAGNYKDFG
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mRNA from alignment at P-wetherbeei_contig18369:680..1036-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18369.1.1 ID=mRNA_P-wetherbeei_contig18369.1.1|Name=mRNA_P-wetherbeei_contig18369.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig18369:680..1036- (Phaeothamnion wetherbeei SAG_119_79)
ATCGAGCGTCGCCTCTATCCTGGCGCGTGCATCACCGCTGGATTCTACGA
TTTCCGCACAGTCTCTCAGTACCGCTCTCACGCTGGCCTGCATCTGGGCT
ACGACATCGCTATGCCACCCGGCAACCAGGTGGCCTGTGGGTGGGGAGGC
ATCGTCACTTCCGTCGTGGTGTGGTCGGGCCTCGAGCACGGCATCACCGT
GGTTTCACCCGATGGCACGCACGTCACCTACGGACACCTTTCTCCCCGCG
TCAAAGTCGGAGCCGTGCTCAAGCCCGGCGACATCGTTGGCGTCATCGTT
CGCGATCACGTGGACGTCAAAATGCGTGACGCTGCCGGCAACTACAAAGA
CTTTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18369:680..1036-

>mRNA_P-wetherbeei_contig18369.1.1 ID=mRNA_P-wetherbeei_contig18369.1.1|Name=mRNA_P-wetherbeei_contig18369.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig18369:680..1036- (Phaeothamnion wetherbeei SAG_119_79)
ATCGAGCGTCGCCTCTATCCTGGCGCGTGCATCACCGCTGGATTCTACGA
TTTCCGCACAGTCTCTCAGTACCGCTCTCACGCTGGCCTGCATCTGGGCT
ACGACATCGCTATGCCACCCGGCAACCAGGTGGCCTGTGGGTGGGGAGGC
ATCGTCACTTCCGTCGTGGTGTGGTCGGGCCTCGAGCACGGCATCACCGT
GGTTTCACCCGATGGCACGCACGTCACCTACGGACACCTTTCTCCCCGCG
TCAAAGTCGGAGCCGTGCTCAAGCCCGGCGACATCGTTGGCGTCATCGTT
CGCGATCACGTGGACGTCAAAATGCGTGACGCTGCCGGCAACTACAAAGA
CTTTGGC
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