mRNA_P-wetherbeei_contig1836.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1836.2.1
Unique NamemRNA_P-wetherbeei_contig1836.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1836.2.1 vs. uniprot
Match: A0A812VDT6_SYMPI (TIL protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812VDT6_SYMPI)

HSP 1 Score: 125 bits (313), Expect = 1.850e-29
Identity = 56/119 (47.06%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  285 KSAPIDINFTYNNGAFDGKKKEMQQRGWIYNAKTKAEWRIAPKI--VGPV--YLPMKLPYIILSCEDDYSSTVIGYPSRAYLWIMAREPAMSPEAYQKALDLAKSCGYDLSHLRVVPQI 629
            K   I +++ +N  A DG+  +  QRGW++N  T AEWR++PK+  +G    Y  +KLPYII+ C  DYSS ++GYPSR YLWI++R+PA+S   YQK ++ +K  GYD + +R VPQI
Sbjct:   79 KKQRIGVHYRFNEKALDGRINDSYQRGWVWNKDTNAEWRVSPKLPLLGYFFSYCGLKLPYIIVDCASDYSSAIVGYPSRTYLWILSRKPAVSDAEYQKLIEKSKELGYDEAKIRKVPQI 197          
BLAST of mRNA_P-wetherbeei_contig1836.2.1 vs. uniprot
Match: A0A835YRJ4_9STRA (Lipocalin/cytosolic fatty-acid binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.980e-26
Identity = 51/120 (42.50%), Postives = 75/120 (62.50%), Query Frame = 3
Query:  276 DPSKSAPIDINFTYNNGAFDGKKKEMQQRGWIYNAKTKAEWRIAPKIVGPVYLPMKLPYIILSCED---DYSSTVIGYPSRAYLWIMAREPAMSPEAYQKALDLAKSCGYDLSHLRVVPQ 626
            +   S  ID++F +N G+F G   EM+Q+GW+ N +T  EWR++P + G   +P K PYII    +    Y +T+IGYP R+YLW+MAR+P +S + YQ  +   K  GYDL  ++ VPQ
Sbjct:   52 EAGSSYDIDVSFKFNKGSFAGSVSEMRQKGWVKNKETFTEWRVSPIVAG-FTIPYKAPYIICDITEGKSQYETTIIGYPDRSYLWVMARQPQISDDTYQSQMAKVKEMGYDLEKVQKVPQ 170          
BLAST of mRNA_P-wetherbeei_contig1836.2.1 vs. uniprot
Match: A0A812SZ76_9DINO (TIL protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SZ76_9DINO)

HSP 1 Score: 122 bits (307), Expect = 1.230e-25
Identity = 53/120 (44.17%), Postives = 82/120 (68.33%), Query Frame = 3
Query:  288 SAPIDINFTYNNGAFDGKKKEMQQRGWIYNAKTKAEWRIAPKIVGPVY------LPMKLPYIILSCEDDYSSTVIGYPSRAYLWIMAREPAMSPEAYQKALDLAKSCGYDLSHLRVVPQI 629
            S  I +++ +N  A DG+  +  QRGW++N +T AEWR++PK+  P++      L +KLPYII+ C +DYS  ++GYP+RAYLWI++R+P +S   YQK +  +K  GYD + +R VPQ+
Sbjct: 1114 SQRIGVHYRFNENALDGRINDSYQRGWLWNKETSAEWRVSPKL--PLFGYFFSHLGLKLPYIIVDCAEDYSQAIVGYPNRAYLWILSRKPTVSDADYQKLIQKSKDLGYDEAKIRKVPQV 1231          
BLAST of mRNA_P-wetherbeei_contig1836.2.1 vs. uniprot
Match: A0A812VWN3_9DINO (TIL protein n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A812VWN3_9DINO)

HSP 1 Score: 120 bits (301), Expect = 6.840e-25
Identity = 54/122 (44.26%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  273 YDPSKSAPIDINFTYNNGAFDGKKKEMQQRGWIYNAKTKAEWRIAPKIVGPVYL----PMKLPYIILSCEDDYSSTVIGYPSRAYLWIMAREPAMSPEAYQKALDLAKSCGYDLSHLRVVPQ 626
            +D SK   I +++ +N  + DG+  +  QRGW++N +T AEWR++PK+    YL     +KLPYII+ C DDYS  ++GYP+RAYLWI++R+P +S   Y+K +  +K  GYD   +R VPQ
Sbjct: 1063 WDESKQR-IGVHYRFNEKSMDGRINDSYQRGWVWNKETSAEWRVSPKLPLFGYLLSYCGLKLPYIIVDCADDYSKAIVGYPNRAYLWILSRKPTVSDADYEKLIQKSKELGYDEDKIRKVPQ 1183          
BLAST of mRNA_P-wetherbeei_contig1836.2.1 vs. uniprot
Match: A0A8J6C9W4_DIALT (Lipocln_cytosolic_FA-bd_dom domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C9W4_DIALT)

HSP 1 Score: 110 bits (276), Expect = 1.100e-24
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  303 INFTYNNGAFDGKKKEMQQRGWIYNAKTKAEWRIAPKIVGPVYLPMKLPYIILSCEDDYSSTVIGYPSRAYLWIMAREPAMSPEAYQKALDLAKSCGYDLSHLRVVPQ 626
            +++ +N    DGK  E +QRG+I+N  T  + R++PK+    Y P++LPY+I    DDY +T++GYPSR+YLWIMAR P +    Y K +D  K  GYD + +R VPQ
Sbjct:   55 VHYKFNEAKADGKVSESEQRGYIHNYDTFTDLRVSPKLPLFGYTPLRLPYLICHLSDDYQTTIVGYPSRSYLWIMARTPTLPDAEYAKLIDKTKQMGYDPAQIRKVPQ 162          
BLAST of mRNA_P-wetherbeei_contig1836.2.1 vs. uniprot
Match: A0A514XFM6_9PROT (Outer membrane lipoprotein Blc n=2 Tax=unclassified Bdellovibrio TaxID=2633795 RepID=A0A514XFM6_9PROT)

HSP 1 Score: 109 bits (272), Expect = 3.600e-24
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  282 SKSAPIDINFTYNNGAFDGKKKEMQQRGWIYNAKTKAEWRIAPKIVGPVYLPMKLPYIILSCEDDYSSTVIGYPSRAYLWIMAREPAMSPEAYQKALDLAKSCGYDLSHLRVVPQI 629
            SK   ID++F YN  +  G  K   Q+ WIY+ KT AEWR+ P      + P+K  Y+++   DDYS TVIG PSR Y+WIM+R+P M  + Y   +   K+ GYD+S ++ VPQ+
Sbjct:   64 SKEERIDVDFRYNADSPTGPVKRYPQKAWIYDKKTNAEWRVQP------WWPLKFAYLVIDLADDYSYTVIGVPSRNYVWIMSRKPTMPSDVYDTLVAKLKASGYDISKIQKVPQV 173          
BLAST of mRNA_P-wetherbeei_contig1836.2.1 vs. uniprot
Match: A0A2E4WJ76_9BACT (Lipocln_cytosolic_FA-bd_dom domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E4WJ76_9BACT)

HSP 1 Score: 106 bits (265), Expect = 1.860e-23
Identity = 48/112 (42.86%), Postives = 73/112 (65.18%), Query Frame = 3
Query:  297 IDINFTYNNGAFDGKKKEMQQRGWIYNAKTKAEWRIAPKIVGPVYLPMKLPYIILSCEDDYSSTVIGYPSRAYLWIMAREPAMSPEAYQKALDLAKSCGYDLSHLRVVPQIE 632
            ID+ F++N  +F G  K++ Q+ +IYN KT AEWRI P      + P+KLPY+++  +++YS TVIGYPSR +LWIM+R  +++ E   K  +   + GYD S ++ VP  E
Sbjct:   48 IDVIFSFNQDSFSGTPKKLTQKAYIYNKKTNAEWRIQP------FWPLKLPYLVIDLDEEYSYTVIGYPSRKFLWIMSRSKSLNEEILSKIYEKLNAQGYDTSLIQQVPHSE 153          
BLAST of mRNA_P-wetherbeei_contig1836.2.1 vs. uniprot
Match: A0A2E3DQD2_9BACT (Lipocln_cytosolic_FA-bd_dom domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E3DQD2_9BACT)

HSP 1 Score: 107 bits (266), Expect = 2.750e-23
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 3
Query:  273 YDPSKSAPIDINFTYNNGAFDGKKKEMQQRGWIYNAKTKAEWRIAPKIVGPVYLPMKLPYIILSCEDDYSSTVIGYPSRAYLWIMAREPAMSPEAYQKALDLAKSCGYDLSHLRVVPQ 626
            Y  S +  I+  F++  G  DG+KK    +G+IYN +T AEWR+          P K+P++I+  + DYS TVIGYPSR Y+WIMAREP M  + Y+  LD     GYD+S ++ VPQ
Sbjct:   66 YALSDNGIIETTFSFYKGTPDGEKKIYYPKGFIYNKETNAEWRMQ------FLWPFKMPFLIIELDQDYSYTVIGYPSRKYVWIMAREPIMKEDRYKMILDNLSDIGYDISLIQKVPQ 177          
BLAST of mRNA_P-wetherbeei_contig1836.2.1 vs. uniprot
Match: A0A2E5I3W6_9BACT (Lipocln_cytosolic_FA-bd_dom domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E5I3W6_9BACT)

HSP 1 Score: 106 bits (264), Expect = 3.360e-23
Identity = 46/109 (42.20%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  297 IDINFTYNNGAFDGKKKEMQQRGWIYNAKTKAEWRIAPKIVGPVYLPMKLPYIILSCEDDYSSTVIGYPSRAYLWIMAREPAMSPEAYQKALDLAKSCGYDLSHLRVVP 623
            ID+ F++N  +F G++K++ Q+ +IYN+ T AEWRI P      + P+KLPY+++  ++DY  TVIGYPSR +LWIM+R   +  E  +   D  ++ GYD S ++ VP
Sbjct:   58 IDVTFSFNKDSFSGERKQLTQKAFIYNSTTNAEWRIQP------FWPLKLPYLVIDLDEDYQYTVIGYPSRKFLWIMSRSKNLDKETLRIIYDKLEAQGYDASMIQKVP 160          
BLAST of mRNA_P-wetherbeei_contig1836.2.1 vs. uniprot
Match: UPI001BC21A3E (Lipocalin family protein n=2 Tax=Methylococcaceae TaxID=403 RepID=UPI001BC21A3E)

HSP 1 Score: 103 bits (258), Expect = 3.080e-22
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 3
Query:  297 IDINFTYNNGAFDGKKKEMQQRGWIYNAKTKAEWRIAPKIVGPVYLPMKLPYIILSCEDDYSSTVIGYPSRAYLWIMAREPAMSPEAYQKALDLAKSCGYDLSHLRVVP 623
            IDI+FTYN G+F+G+ K + Q+GWIY+ KT+A W+++P      + P+K  Y++++  +DYS T IG P + YLWIMAR+      A   A    K  GYD  +L  VP
Sbjct:   70 IDIDFTYNRGSFNGELKSLPQKGWIYDTKTQAHWKVSP------FWPLKFDYLVVALAEDYSWTAIGVPDQKYLWIMARDWKNPDSAVAAATRALKDAGYDAQNLVTVP 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1836.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812VDT6_SYMPI1.850e-2947.06TIL protein n=1 Tax=Symbiodinium pilosum TaxID=295... [more]
A0A835YRJ4_9STRA5.980e-2642.50Lipocalin/cytosolic fatty-acid binding domain-cont... [more]
A0A812SZ76_9DINO1.230e-2544.17TIL protein n=1 Tax=Symbiodinium natans TaxID=8784... [more]
A0A812VWN3_9DINO6.840e-2544.26TIL protein n=5 Tax=Symbiodinium TaxID=2949 RepID=... [more]
A0A8J6C9W4_DIALT1.100e-2444.44Lipocln_cytosolic_FA-bd_dom domain-containing prot... [more]
A0A514XFM6_9PROT3.600e-2443.10Outer membrane lipoprotein Blc n=2 Tax=unclassifie... [more]
A0A2E4WJ76_9BACT1.860e-2342.86Lipocln_cytosolic_FA-bd_dom domain-containing prot... [more]
A0A2E3DQD2_9BACT2.750e-2344.07Lipocln_cytosolic_FA-bd_dom domain-containing prot... [more]
A0A2E5I3W6_9BACT3.360e-2342.20Lipocln_cytosolic_FA-bd_dom domain-containing prot... [more]
UPI001BC21A3E3.080e-2243.12Lipocalin family protein n=2 Tax=Methylococcaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1836contigP-wetherbeei_contig1836:1731..3759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr46924
PFAMsLipocalin_2
Model size1611
Max annot lvl2759|Eukaryota
KEGG koko:K03098
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.79e-15
EggNOG OGsCOG3040@1|root,KOG4824@2759|Eukaryota
Descriptionnegative regulation of lipoprotein oxidation
Cds size381
COG categoryM
BRITEko00000,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186143.9270313-UTR-P-wetherbeei_contig1836:1730..20801683186143.9270313-UTR-P-wetherbeei_contig1836:1730..2080Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1836 1731..2080 +
1683186143.9590015-UTR-P-wetherbeei_contig1836:2879..37591683186143.9590015-UTR-P-wetherbeei_contig1836:2879..3759Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1836 2880..3759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186143.9355838-CDS-P-wetherbeei_contig1836:2080..21251683186143.9355838-CDS-P-wetherbeei_contig1836:2080..2125Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1836 2081..2125 +
1683186143.9433973-CDS-P-wetherbeei_contig1836:2335..24481683186143.9433973-CDS-P-wetherbeei_contig1836:2335..2448Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1836 2336..2448 +
1683186143.9510827-CDS-P-wetherbeei_contig1836:2656..28791683186143.9510827-CDS-P-wetherbeei_contig1836:2656..2879Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1836 2657..2879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1836.2.1prot_P-wetherbeei_contig1836.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1836 2081..2879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1836.2.1

>prot_P-wetherbeei_contig1836.2.1 ID=prot_P-wetherbeei_contig1836.2.1|Name=mRNA_P-wetherbeei_contig1836.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MQQRGWIYNAKTKAEWRIAPKIVGPVYLPMKLPYIILSCEDDYSSTVIGY
PSRAYLWIMAREPAMSPEAYQKALDLAKSCGYDLSHLRVVPQIEAQKKEE
EERMQDAPAAATIAAAIGTGSAEGEK*
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mRNA from alignment at P-wetherbeei_contig1836:1731..3759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1836.2.1 ID=mRNA_P-wetherbeei_contig1836.2.1|Name=mRNA_P-wetherbeei_contig1836.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2029bp|location=Sequence derived from alignment at P-wetherbeei_contig1836:1731..3759+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTACAGCTGCTGCCACCTGTCCTCATAATGGTTTTGCGGCCTCTTTCT GCGGCGGCCCCGAGTTAGTCCCACTCTCGCCTACTTCGAAGCGACAGTCC CAGCCGCTTTCCTGCCCTCGTCAACAACAATGCAATTCAATCTCGTCCGC CTCGCCTCCTCTTTGCGGGTTTGCACATCTTTACTGTCTCTCCCTCTCGC TGCTAAGCATCTTTTCATGCGCTCGCTCTTCTTCTTCATTTTCCTCTCAT TCCCATGTTTCCGTAATGGTAGTACGACCCGAGCAAATCCGCGCCGATCG ACATCAACTTCACGTACAACAACGGTGCTTTCGACGGCAAGAAGAAGGAG ATGCAGCAGCGGGGATGGATCTATAACGCCAAAACCAAAGCAGAGGTAAC GGCAAGAAGGCCACTTCCGTCTTATATGCATAAGGGATTTGCTCCTTTCC GGATCTTGTTGTCCCGCTTCGAAACATTCAACCTGAACTTGCCCTTCAAC CCAGGTGCTGCTAAATAGCGGTCGTGAACGACCCCAATAGCGGGCACCAT AATTGACGCTCCCGCACTCATCTTTTACTTATGCTTACAAAAAACGTCTC ATCAGTGGCGGATTGCGCCCAAGATCGTGGGGCCCGTGTACTTGCCCATG AAGCTCCCCTACATCATCCTGAGCTGCGAGGATGACTATAGCTCCACCGT CATCGGCTATCCCAGCCGGTGGGGTTAACTTTCCTCTCTAGCCAGCTGTG CTTCAATAGTTCACCGGTTGGCGACGCGGTCTTGTCTGTTTCTGTCTATT GCTGTCCCCTCTCTCCTCTTTTTTGACGGGTTTCGTCGCTTCCACCCGCC TCTCGTGCCGACCGTTTCTCCACTCGGGTCGTCTTCTCTCGTCTGCCTGC ATATTTTCGGTCCGCTCTGCTTGCAGGGCATACCTATGGATCATGGCGCG GGAGCCTGCCATGTCCCCCGAGGCCTACCAGAAAGCGCTTGACCTCGCCA AGTCATGCGGCTACGACCTGTCGCACCTGCGGGTCGTCCCGCAGATCGAG GCGCAGAAGAAGGAGGAGGAGGAGCGCATGCAGGATGCGCCGGCCGCCGC CACCATCGCCGCGGCCATCGGGACGGGGAGCGCTGAAGGGGAAAAGTGAA AAGTGTAGGCCCTTGCTGCCTGGAGCGAGGCGGGAGCGGTCGGAGAGTGC GGAGCTGCGCGAACGGAGCGGAGCAAACGGGGTGGAGCGGAGGCAAAAGT GTCTGGGGGCCGTTTTCCTTCGGGGGGACGGTCGCGGTTGTTGTGGCGGC GGGCCGTCCGTTCCCTTGGTGCGTACGGCCCGCCGGCGTGTAGGGCAGCT GGTAGTGCATGATCGGAAAAGAAGTTTTGTTCGGCCCGGCCAGGTGGGGT GAGGCGCAAACTTCGTGAACCATCGCCCCCCAAAAAGAATGGATAGTGGG GCGGTGAAGGAATGTTTGGGAGATGCAAAAGGGTCAGGTGACGGTCGCAA GGAGCGGAAGGAACAGACGGCAGCAACACACCGACCGCCGGGGAAAGGGA TTCCTGATGGAGAAACGGTTGTAGAAACATGGGGCGGGCGGGCGAACGAG CAAGCGAGCCAGGATGCTACCTCCTGCCCTCTCGTTCCCCGCGTGGTCCC TCACAATGGTGGGAATAACTCTATTATGTATGTAGCGGTTCCTTTTTCAC CCATGGCGCCGCGATACAGGCAGAAACCGCACAAAGTAAGAAAACCAAAA GTCAACATGCCTTGACCGCGCAGGTACAGCATAGACTTCCACAGCGTTTT TATCGCCCACAGTCACCGTCTTCGTGCCGTTACGGCCTGTCTCCACCGTC GCTCCACTGCCGTGCCGCGACAACTGCCGCCGTTGCCGCCACCAGCCGCC GCTGCCGCAACCAGCCGCCGCAGCCGCCACCAGCCGCCGCTGCCACCACC GCCCATCGCAGCTGGAGGCTTCTGACGCCGCCATGGCCCACTATCGCCCG CCAACGCCATTCCACACCGCCTCCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1836:1731..3759+

>mRNA_P-wetherbeei_contig1836.2.1 ID=mRNA_P-wetherbeei_contig1836.2.1|Name=mRNA_P-wetherbeei_contig1836.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig1836:1731..3759+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCAGCGGGGATGGATCTATAACGCCAAAACCAAAGCAGAGTGGCG
GATTGCGCCCAAGATCGTGGGGCCCGTGTACTTGCCCATGAAGCTCCCCT
ACATCATCCTGAGCTGCGAGGATGACTATAGCTCCACCGTCATCGGCTAT
CCCAGCCGGGCATACCTATGGATCATGGCGCGGGAGCCTGCCATGTCCCC
CGAGGCCTACCAGAAAGCGCTTGACCTCGCCAAGTCATGCGGCTACGACC
TGTCGCACCTGCGGGTCGTCCCGCAGATCGAGGCGCAGAAGAAGGAGGAG
GAGGAGCGCATGCAGGATGCGCCGGCCGCCGCCACCATCGCCGCGGCCAT
CGGGACGGGGAGCGCTGAAGGGGAAAAGTGA
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