mRNA_P-wetherbeei_contig18349.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18349.1.1
Unique NamemRNA_P-wetherbeei_contig18349.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18349.1.1 vs. uniprot
Match: A0A835Z9A2_9STRA (PITH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9A2_9STRA)

HSP 1 Score: 185 bits (470), Expect = 2.020e-57
Identity = 91/133 (68.42%), Postives = 108/133 (81.20%), Query Frame = 1
Query:    1 APPAINEMEVREITDMVSKQDCYCLNEQSVFPWQNLFIGDHRLLLKSDADEQLLIHIGFQETVKIHSINFTAPQDDSAPLTVKLFINRDSFGFSDVDSMEPAMTLELTADDLSPDNVTLLKFVKFQRVSSLSV 399
            A PA  E EVR++ D++SK +C+CLNE+    W+NLF+GD RLLL SDADEQLL+HIGF ETVK+HSINF A  DDSAP TVKLFINRDS GFSD + +E   TLELTA+DL PD+ TLLKFVKFQRVSS+S+
Sbjct:   15 AAPAA-EFEVRDLNDLISKAECFCLNEKPSATWRNLFMGDDRLLLTSDADEQLLLHIGFNETVKLHSINFQALNDDSAPATVKLFINRDSMGFSDCEDIEATQTLELTAEDLKPDSATLLKFVKFQRVSSISI 146          
BLAST of mRNA_P-wetherbeei_contig18349.1.1 vs. uniprot
Match: D8LNE4_ECTSI (PITH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE4_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.650e-56
Identity = 86/133 (64.66%), Postives = 108/133 (81.20%), Query Frame = 1
Query:    1 APPAINEMEVREITDMVSKQDCYCLNEQSVFPWQNLFIGDHRLLLKSDADEQLLIHIGFQETVKIHSINFTAPQDDSAPLTVKLFINRDSFGFSDVDSMEPAMTLELTADDLSPDNVTLLKFVKFQRVSSLSV 399
            A P  +++EVR+ITD+V K DCYCLN+ S   W+NLF GD RL+L+SDADEQLL+H+GF ETVK+HSI+F AP DD+APLTVKL++NR+S GFSD D M PA TLELT +DL   + ++LKFVKFQRVS LS+
Sbjct:   14 AAPKASDLEVRDITDLVCKADCYCLNQLSGATWENLFQGDDRLMLQSDADEQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSI 146          
BLAST of mRNA_P-wetherbeei_contig18349.1.1 vs. uniprot
Match: A0A6S9JQ99_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JQ99_HETAK)

HSP 1 Score: 160 bits (405), Expect = 1.330e-47
Identity = 78/132 (59.09%), Postives = 99/132 (75.00%), Query Frame = 1
Query:   10 AINEMEVREITDMVSKQDCYCLNEQSVFPWQNLFIGDHRLLLKSDADEQLLIHIGFQETVKIHSINFTAPQDD--SAPLTVKLFINRDSFGFSDVDSMEPAMTLELTADDLSPDNVTLLKFVKFQRVSSLSV 399
            A+   E+R+ITD+++K  CYCLNE   +  QNLF+GD RL L+S+ADEQLL+H+ F ETVKIHSINF +P DD  + P+TVKLF+NRDS GFSD + + P   LEL  +DL PD   LLKFVKFQRV+SL +
Sbjct:   14 AVPSQEIRDITDLLNKAGCYCLNEDPGYKMQNLFMGDDRLQLRSEADEQLLLHLDFNETVKIHSINFQSPADDPEAHPVTVKLFVNRDSMGFSDANDITPVQELELGPEDLGPDAACLLKFVKFQRVNSLII 145          
BLAST of mRNA_P-wetherbeei_contig18349.1.1 vs. uniprot
Match: W7TWZ4_9STRA (Thioredoxin-like protein 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWZ4_9STRA)

HSP 1 Score: 154 bits (389), Expect = 3.350e-45
Identity = 69/133 (51.88%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    1 APPAINEMEVREITDMVSKQDCYCLNEQSVFPWQNLFIGDHRLLLKSDADEQLLIHIGFQETVKIHSINFTAPQDDSAPLTVKLFINRDSFGFSDVDSMEPAMTLELTADDLSPDNVTLLKFVKFQRVSSLSV 399
            AP      E+ +ITD ++K +C+ LN    +PW+NLF+GD RL L+SD DEQL++H+ F E VK+HS+N  AP+ ++AP TVKL++N+ SF F D +++EP   LELT +D   + VTLLKFVKFQRVSSL++
Sbjct:    8 APXXXXSNEIVDITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTI 140          
BLAST of mRNA_P-wetherbeei_contig18349.1.1 vs. uniprot
Match: A0A5D6Y3D3_9STRA (PITH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3D3_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.960e-43
Identity = 71/123 (57.72%), Postives = 88/123 (71.54%), Query Frame = 1
Query:   31 REITDMVSKQDCYCLNEQSVFPWQNLFIGDHRLLLKSDADEQLLIHIGFQETVKIHSINFTAPQDDSAPLTVKLFINRDSFGFSDVDSMEPAMTLELTADDLSPDNVTLLKFVKFQRVSSLSV 399
            R+++D  S+  CYCLNE    P+ NLFIGDH L LKSDADEQL++HI FQ+ VK+HSIN  AP  +SAP  +KLF NR S GFSD   +EP  T+ELT DDL P     L+FVKFQRV S+++
Sbjct:   15 RDLSDAFSRSACYCLNEHPSHPFGNLFIGDHTLQLKSDADEQLILHIEFQDAVKLHSINIVAPVGESAPRVLKLFANRSSLGFSDAGDIEPTQTIELTDDDLDPSKEVELRFVKFQRVQSITL 137          
BLAST of mRNA_P-wetherbeei_contig18349.1.1 vs. uniprot
Match: K3WS93_GLOUD (PITH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS93_GLOUD)

HSP 1 Score: 146 bits (368), Expect = 3.470e-42
Identity = 69/123 (56.10%), Postives = 89/123 (72.36%), Query Frame = 1
Query:   31 REITDMVSKQDCYCLNEQSVFPWQNLFIGDHRLLLKSDADEQLLIHIGFQETVKIHSINFTAPQDDSAPLTVKLFINRDSFGFSDVDSMEPAMTLELTADDLSPDNVTLLKFVKFQRVSSLSV 399
            +++TD  S+ +CYCLNE    P+ NLFIGD  L LKSDADEQL++H+ FQ+ VKIHSIN  AP  ++AP  VKLF NR S GFSD   +EP  T+ELT +DL P+    L+FVKFQRV S+++
Sbjct:    6 KDLTDSFSRSECYCLNENPSHPFGNLFIGDGTLQLKSDADEQLILHLEFQDAVKIHSINIMAPPGETAPRVVKLFANRTSLGFSDAGDIEPTQTIELTDEDLEPNKEIELRFVKFQRVKSVTI 128          
BLAST of mRNA_P-wetherbeei_contig18349.1.1 vs. uniprot
Match: A0A6G0XIK8_9STRA (PITH domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XIK8_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.180e-41
Identity = 69/122 (56.56%), Postives = 88/122 (72.13%), Query Frame = 1
Query:   34 EITDMVSKQDCYCLNEQSVFPWQNLFIGDHRLLLKSDADEQLLIHIGFQETVKIHSINFTAPQDDSAPLTVKLFINRDSFGFSDVDSMEPAMTLELTADDLSPDNVTLLKFVKFQRVSSLSV 399
            ++T+   K +CYCLNE   F + NLFIGD  LLLKS+ADEQLLIH+ F++ VKIHSI+  AP DDSAP  +KLF+NR++ GFSDV  +EP   LE T D L       L+FVKFQRV+SL++
Sbjct:    9 DLTEQFDKSNCYCLNEDPSFGYNNLFIGDDTLLLKSEADEQLLIHLEFKDAVKIHSISVKAPHDDSAPSMIKLFVNRNNLGFSDVTDIEPTQKLEWTQDQLQTGTPVELRFVKFQRVTSLTI 130          
BLAST of mRNA_P-wetherbeei_contig18349.1.1 vs. uniprot
Match: A0A024TZP3_9STRA (PITH domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZP3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.120e-41
Identity = 69/126 (54.76%), Postives = 91/126 (72.22%), Query Frame = 1
Query:   34 EITDMVSKQDCYCLNEQSVFPWQNLFIGDHRLLLKSDADEQLLIHIGFQETVKIHSINFTAPQDDSAPLTVKLFINRDSFGFSDVDSMEPAMTLELTADDLSPDNVTLLKFVKFQRVSSLSVRLPH 411
            ++++  +K +CYCLNE   F   NLFIGD  L+LKS+ADEQLLIH+ F+E VKIHSI+  AP+DD+AP  VKLF+NR++ GFSDV  +EP   LE T + L       L+FVKFQRV+SL+V+ P 
Sbjct:    8 DLSEHYNKSNCYCLNEDPSFGHGNLFIGDESLVLKSEADEQLLIHLEFKEAVKIHSISLKAPKDDTAPSVVKLFVNRNNLGFSDVTDIEPTQQLEWTQEQLQTGTPVELRFVKFQRVTSLTVQSPR 133          
BLAST of mRNA_P-wetherbeei_contig18349.1.1 vs. uniprot
Match: A0A225UP86_9STRA (Thioredoxin (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UP86_9STRA)

HSP 1 Score: 140 bits (353), Expect = 4.290e-40
Identity = 63/122 (51.64%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   34 EITDMVSKQDCYCLNEQSVFPWQNLFIGDHRLLLKSDADEQLLIHIGFQETVKIHSINFTAPQDDSAPLTVKLFINRDSFGFSDVDSMEPAMTLELTADDLSPDNVTLLKFVKFQRVSSLSV 399
            ++ + +S +DCYCLNE    P+ NLF+GD  L LKSDADEQL+++I FQ+ VK+ S+N  AP+ D AP  +KLF+NR + GFSD   +EP  T+EL+ DDL P+N   L+FVKFQRV ++++
Sbjct:   14 DLKEAISTKDCYCLNEDPHKPFGNLFMGDETLTLKSDADEQLMLYIEFQDNVKVFSLNIVAPKGDEAPRVIKLFVNRPNLGFSDAGDVEPTQTIELSEDDLLPENDVELRFVKFQRVKNITI 135          
BLAST of mRNA_P-wetherbeei_contig18349.1.1 vs. uniprot
Match: A0A662WMQ7_9STRA (PITH domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMQ7_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.910e-40
Identity = 65/124 (52.42%), Postives = 91/124 (73.39%), Query Frame = 1
Query:   34 EITDMVSKQDCYCLNEQSVFPWQNLFIGDHRLLLKSDADEQLLIHIGFQETVKIHSINFTAPQDDSAPLTVKLFINRDSFGFSDVDSMEPAMTLELTADDLSPDNVTLLKFVKFQRVSSLSVRL 405
            ++ + +S ++CYCLNE    P+ NLFIGD  L L SDADEQL++H+ FQ+TVK+HS+N  A   + AP  +KLF+NR + GFSD   +EP  T+ELT +DL P+N   L+FVKFQRV+S++VR+
Sbjct:   17 DLKEAISMKECYCLNENPNKPFGNLFIGDETLQLHSDADEQLILHVEFQDTVKVHSLNVVAAAGEEAPRVLKLFVNRANLGFSDATDVEPTQTIELTEEDLLPENDVELRFVKFQRVTSITVRV 140          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18349.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9A2_9STRA2.020e-5768.42PITH domain-containing protein n=1 Tax=Tribonema m... [more]
D8LNE4_ECTSI1.650e-5664.66PITH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6S9JQ99_HETAK1.330e-4759.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TWZ4_9STRA3.350e-4551.88Thioredoxin-like protein 1 n=3 Tax=Monodopsidaceae... [more]
A0A5D6Y3D3_9STRA1.960e-4357.72PITH domain-containing protein n=1 Tax=Pythium bra... [more]
K3WS93_GLOUD3.470e-4256.10PITH domain-containing protein n=1 Tax=Globisporan... [more]
A0A6G0XIK8_9STRA2.180e-4156.56PITH domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A024TZP3_9STRA5.120e-4154.76PITH domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A225UP86_9STRA4.290e-4051.64Thioredoxin (Fragment) n=1 Tax=Phytophthora megaka... [more]
A0A662WMQ7_9STRA4.910e-4052.42PITH domain-containing protein n=1 Tax=Nothophytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18349contigP-wetherbeei_contig18349:141..1262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNE4
PFAMsPITH,Thioredoxin
Model size414
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748
Exons4
Evalue9.65e-56
EggNOG OGsKOG0908@1|root,KOG0908@2759|Eukaryota
Ec32 ortholog descriptionGalactose-binding domain-like
Ec32 orthologEc-04_004160.1
Descriptionprotein-disulfide reductase activity
Cds size393
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186143.4395244-UTR-P-wetherbeei_contig18349:140..1611683186143.4395244-UTR-P-wetherbeei_contig18349:140..161Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18349 141..161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186143.4507074-CDS-P-wetherbeei_contig18349:161..1961683186143.4507074-CDS-P-wetherbeei_contig18349:161..196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18349 162..196 +
1683186143.459847-CDS-P-wetherbeei_contig18349:381..4761683186143.459847-CDS-P-wetherbeei_contig18349:381..476Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18349 382..476 +
1683186143.46922-CDS-P-wetherbeei_contig18349:691..7661683186143.46922-CDS-P-wetherbeei_contig18349:691..766Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18349 692..766 +
1683186143.478807-CDS-P-wetherbeei_contig18349:1074..12621683186143.478807-CDS-P-wetherbeei_contig18349:1074..1262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18349 1075..1262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18349.1.1prot_P-wetherbeei_contig18349.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18349 162..1262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18349.1.1

>prot_P-wetherbeei_contig18349.1.1 ID=prot_P-wetherbeei_contig18349.1.1|Name=mRNA_P-wetherbeei_contig18349.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MEVREITDMVSKQDCYCLNEQSVFPWQNLFIGDHRLLLKSDADEQLLIHI
GFQETVKIHSINFTAPQDDSAPLTVKLFINRDSFGFSDVDSMEPAMTLEL
TADDLSPDNVTLLKFVKFQRVSSLSVRLPH*
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mRNA from alignment at P-wetherbeei_contig18349:141..1262+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18349.1.1 ID=mRNA_P-wetherbeei_contig18349.1.1|Name=mRNA_P-wetherbeei_contig18349.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1122bp|location=Sequence derived from alignment at P-wetherbeei_contig18349:141..1262+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGCCGGCGATAAACGAGATGGAAGTCAGAGAGATCACAGACATGGT TTCAAAGTGAGTTTTACGGAGACGCAGGTTTCTTTCCTCTCTTCTATGTA CCGCTTGTTGCTTCCTAAAGCATGCGATACGTCTGCCTGGTCTTCATCCT TCCTCCTTGCCTCCCGCTTGTCTCAAAGCTAATGTCGCATTGCTTCTTTC TCGTGCAACTGCTCACGACGTCACACAATCGGCTGCGACAGGCAGGACTG TTACTGCCTGAACGAGCAGAGCGTCTTCCCATGGCAAAATCTTTTCATCG GGGACCACAGACTCTTGCTTAAATCGGACGCGGACGGTGAGTGTCAATTC GGCATCTCCCTAAAAGTTATTTTGAGGACCAGTCGCAAACACACAGATTA AAAGACGCAACCAAAGTCATAGGTTTCACTGCTTTCCTCCCATCGTTCTT GACAACTTCTTCATTGCGTATTCGTTCGGCTCGCGTGTTCCCGGCCGTGC GTCGGTGGTGGCTCCTTTGCCCGGAAACGCACTTCTTTAAACCCACGGCA GAGCAATTGCTGATCCACATCGGCTTCCAAGAGACGGTGAAGATCCACTC GATCAACTTCACGGCGCCACAAGACGGTGAGAGAGTGGGAACGAAGCGGA CGTTAGCTCACTTGTCAAAGTTTAAGGGGACCTTTGACAGCCGCGTCAGG GCCGTCCTCTGGGGCTTTGAGTGGGCGAAGCGACAACTTTTAAGCAAATG GCCTTTTCGCTCCGCGACTGCTCGTCAAAATCGAATACGTTTCAAGGCAT TCCTCTTTTCGCTCGCTTTTCGCAGTGCTCCACGGCAGTGAATTCACAAT ACCATTGCCCGCCGATACCGTCGAAACTGCCTGGTCCAACAACAATAAGT AAAACGAAAAACCAAAACGAAAAACTGTTCACAGACTCGGCGCCGCTGAC GGTGAAGCTGTTCATCAACCGCGACAGCTTCGGCTTCAGCGACGTCGACT CGATGGAGCCCGCAATGACACTCGAGCTTACGGCGGACGATCTGAGCCCC GACAATGTCACGCTGCTCAAGTTCGTCAAGTTCCAGCGGGTATCGTCCCT TTCGGTGCGTTTGCCACATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18349:141..1262+

>mRNA_P-wetherbeei_contig18349.1.1 ID=mRNA_P-wetherbeei_contig18349.1.1|Name=mRNA_P-wetherbeei_contig18349.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig18349:141..1262+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGTCAGAGAGATCACAGACATGGTTTCAAAGCAGGACTGTTACTG
CCTGAACGAGCAGAGCGTCTTCCCATGGCAAAATCTTTTCATCGGGGACC
ACAGACTCTTGCTTAAATCGGACGCGGACGAGCAATTGCTGATCCACATC
GGCTTCCAAGAGACGGTGAAGATCCACTCGATCAACTTCACGGCGCCACA
AGACGACTCGGCGCCGCTGACGGTGAAGCTGTTCATCAACCGCGACAGCT
TCGGCTTCAGCGACGTCGACTCGATGGAGCCCGCAATGACACTCGAGCTT
ACGGCGGACGATCTGAGCCCCGACAATGTCACGCTGCTCAAGTTCGTCAA
GTTCCAGCGGGTATCGTCCCTTTCGGTGCGTTTGCCACATTAA
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