mRNA_P-wetherbeei_contig18313.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18313.1.1
Unique NamemRNA_P-wetherbeei_contig18313.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18313.1.1 vs. uniprot
Match: A0A6H5JNM9_9PHAE (TauD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.600e-22
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    1 FYRYHAALSAAIRDPAAVASVLLQPGDMVVANNHRTLHGRLAFEGRRRMVGCYVGRDELESRARI 195
            FY YHA+LS  IRDP+ VA ++L+PG+ V+ NNHR LHGR +F+GRRRMVGCY+G DELES AR+
Sbjct:  364 FYEYHASLSKIIRDPSLVARIVLEPGECVILNNHRALHGRESFKGRRRMVGCYLGMDELESSARV 428          
BLAST of mRNA_P-wetherbeei_contig18313.1.1 vs. uniprot
Match: D7FLG7_ECTSI (TauD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG7_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.110e-21
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 FYRYHAALSAAIRDPAAVASVLLQPGDMVVANNHRTLHGRLAFEGRRRMVGCYVGRDELESRARI 195
            FY YHA+LS  IRDP+ VA ++L+PG+ V+ +NHR LHGR +F+GRRRMVGCY+G DEL S AR+
Sbjct:  206 FYEYHASLSEIIRDPSLVARIVLEPGECVILDNHRALHGRESFKGRRRMVGCYLGMDELHSSARV 270          
BLAST of mRNA_P-wetherbeei_contig18313.1.1 vs. uniprot
Match: A0A835ZFJ6_9STRA (TauD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.260e-18
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    1 FYRYHAALSAAIRDPAAVASVLLQPGDMVVANNHRTLHGRLAFEGRRRMVGCYVGRDELESRARI 195
            FY++H  L+  IR  +++  + L+PGD V+A+NHRT+HGR AF GRRRMVGCY+ RD+ ESRAR+
Sbjct:  170 FYKHHGKLTELIRAESSILKLRLRPGDTVIADNHRTMHGREAFVGRRRMVGCYISRDDHESRARV 234          
BLAST of mRNA_P-wetherbeei_contig18313.1.1 vs. uniprot
Match: D0LMF7_HALO1 (Gamma-butyrobetaine dioxygenase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) TaxID=502025 RepID=D0LMF7_HALO1)

HSP 1 Score: 65.1 bits (157), Expect = 9.490e-11
Identity = 35/67 (52.24%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    4 YRYHAALSAAIRDPAAVASVLLQPGDMVVANNHRTLHGRLAFE---GRRRMVGCYVGRDELESRARI 195
            YR H AL   IR PA      L PGD+VV +NHR LHGR AF+   GRR + GCYV  + L SR R+
Sbjct:  339 YRAHRALGERIRQPALCHGFRLGPGDLVVFDNHRVLHGRAAFDPSTGRRHLQGCYVELELLHSRLRV 405          
BLAST of mRNA_P-wetherbeei_contig18313.1.1 vs. uniprot
Match: A0A7C7YAG9_9PROT (DUF971 domain-containing protein n=1 Tax=Candidatus Lambdaproteobacteria bacterium TaxID=2035771 RepID=A0A7C7YAG9_9PROT)

HSP 1 Score: 63.2 bits (152), Expect = 4.350e-10
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    1 FYRYHAALSAAIRDPAAVASVLLQPGDMVVANNHRTLHGRLAFEGRRRMVGCYVGRDELESRARI 195
            FY    A  +   DP      LL PG+M++ NN R LHGR  F+GRRRM GCY+ R++ ESR R+
Sbjct:  302 FYEAIRAFDSLANDPQLQWRHLLAPGEMLIFNNWRVLHGRGEFQGRRRMSGCYLNREDFESRLRM 366          
BLAST of mRNA_P-wetherbeei_contig18313.1.1 vs. uniprot
Match: UPI001865C283 (TauD/TfdA family dioxygenase n=1 Tax=Oricola sp. NBU1457 TaxID=2775868 RepID=UPI001865C283)

HSP 1 Score: 63.2 bits (152), Expect = 4.370e-10
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 FYRYHAALSAAIRDPAAVASVLLQPGDMVVANNHRTLHGRLAFE---GRRRMVGCYVGRDELESRARI 195
            +YR + A  AA RDPA      L+PG+MVV +N R LHGR AF+   G R + G YV R E +SR R+
Sbjct:  299 YYRAYRAFMAATRDPAYAVEFALRPGEMVVFDNRRVLHGRAAFDPATGHRHLQGFYVDRGEFDSRLRV 366          
BLAST of mRNA_P-wetherbeei_contig18313.1.1 vs. uniprot
Match: A0A5C3M6G0_9AGAR (Trimethyllysine dioxygenase n=1 Tax=Crucibulum laeve TaxID=68775 RepID=A0A5C3M6G0_9AGAR)

HSP 1 Score: 63.2 bits (152), Expect = 4.610e-10
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   61 VLLQPGDMVVANNHRTLHGRLAFEGRRRMVGCYVGRDELESRARI 195
            V LQPG  VV +NHR LHGR AF+GRRRM G Y+G DE +S+ R+
Sbjct:  411 VQLQPGTAVVVDNHRILHGRSAFDGRRRMCGAYIGVDEYQSKLRV 455          
BLAST of mRNA_P-wetherbeei_contig18313.1.1 vs. uniprot
Match: A0A6N9BG67_9PROT (Gamma-butyrobetaine,2-oxoglutarate dioxygenase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N9BG67_9PROT)

HSP 1 Score: 62.0 bits (149), Expect = 1.050e-9
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   19 ALSAAIRDPAAVASVLLQPGDMVVANNHRTLHGRLAFE---GRRRMVGCYVGRDELESRARI 195
            A +A +RDPA      L PG++++ +N R LHGR AF+   GRR + GCYV RD+L SR R+
Sbjct:  265 AFAAVVRDPALECHYRLNPGELLIFDNRRVLHGRAAFDPSTGRRHLQGCYVDRDQLLSRIRV 326          
BLAST of mRNA_P-wetherbeei_contig18313.1.1 vs. uniprot
Match: A0A7G3CW95_9RHOB (Trimethyllysine dioxygenase n=1 Tax=Carideicomes alvinocaridis TaxID=2541728 RepID=A0A7G3CW95_9RHOB)

HSP 1 Score: 62.0 bits (149), Expect = 1.130e-9
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   34 IRDPAAVASVLLQPGDMVVANNHRTLHGRLAFEGRRRMVGCYVGRDELESRARI 195
            IRD A   +   + GDMV+ +N R LHGRLAFEG+R MVGCY+ R++ ESR R+
Sbjct:  312 IRDRANQYAFGQREGDMVIFDNWRLLHGRLAFEGQRHMVGCYLNREDFESRMRM 365          
BLAST of mRNA_P-wetherbeei_contig18313.1.1 vs. uniprot
Match: A0A8J6CET4_DIALT (TauD domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CET4_DIALT)

HSP 1 Score: 62.0 bits (149), Expect = 1.140e-9
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    1 FYRYHAALSAAIRDPAAVASVLLQPGDMVVANNHRTLHGRLAFEGR-RRMVGCYVGRDELESRAR 192
            F  +  AL   +  PA V  V L+PG  +V +N R LHGR  F+G  R MVGCYVGRDE ESR R
Sbjct:  316 FLPHWRALVEQVNAPAHVEHVRLEPGQCLVVDNQRVLHGRTPFDGGVREMVGCYVGRDEYESRLR 380          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18313.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNM9_9PHAE4.600e-2266.15TauD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FLG7_ECTSI2.110e-2163.08TauD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZFJ6_9STRA2.260e-1856.92TauD domain-containing protein n=1 Tax=Tribonema m... [more]
D0LMF7_HALO19.490e-1152.24Gamma-butyrobetaine dioxygenase n=1 Tax=Haliangium... [more]
A0A7C7YAG9_9PROT4.350e-1047.69DUF971 domain-containing protein n=1 Tax=Candidatu... [more]
UPI001865C2834.370e-1048.53TauD/TfdA family dioxygenase n=1 Tax=Oricola sp. N... [more]
A0A5C3M6G0_9AGAR4.610e-1062.22Trimethyllysine dioxygenase n=1 Tax=Crucibulum lae... [more]
A0A6N9BG67_9PROT1.050e-948.39Gamma-butyrobetaine,2-oxoglutarate dioxygenase (Fr... [more]
A0A7G3CW95_9RHOB1.130e-955.56Trimethyllysine dioxygenase n=1 Tax=Carideicomes a... [more]
A0A8J6CET4_DIALT1.140e-952.31TauD domain-containing protein n=2 Tax=Diacronema ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18313contigP-wetherbeei_contig18313:2..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FLG7
PFAMsDUF971,TauD
Model size195
Max annot lvl2759|Eukaryota
KEGG rclassRC00773
KEGG koko:K00474
KEGG ReactionR03451
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.46e-22
EggNOG OGsCOG2175@1|root,KOG3889@2759|Eukaryota
EC1.14.11.8
Descriptiontrimethyllysine dioxygenase activity
Cds size195
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186142.5708833-CDS-P-wetherbeei_contig18313:1..851683186142.5708833-CDS-P-wetherbeei_contig18313:1..85Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18313 2..85 +
1683186142.582054-CDS-P-wetherbeei_contig18313:465..5761683186142.582054-CDS-P-wetherbeei_contig18313:465..576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18313 466..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18313.1.1prot_P-wetherbeei_contig18313.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18313 2..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18313.1.1

>prot_P-wetherbeei_contig18313.1.1 ID=prot_P-wetherbeei_contig18313.1.1|Name=mRNA_P-wetherbeei_contig18313.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
FYRYHAALSAAIRDPAAVASVLLQPGDMVVANNHRTLHGRLAFEGRRRMV
GCYVGRDELESRARI
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mRNA from alignment at P-wetherbeei_contig18313:2..576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18313.1.1 ID=mRNA_P-wetherbeei_contig18313.1.1|Name=mRNA_P-wetherbeei_contig18313.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=575bp|location=Sequence derived from alignment at P-wetherbeei_contig18313:2..576+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTACCGCTACCATGCCGCACTGTCGGCGGCGATCCGCGACCCGGCCGC CGTCGCCTCTGTTCTTCTGCAGCCCGGCGACATGGTGAGGCGGATGCGGG TTTCTCTTGAGGATTTTGGATTGCGGAGCTGTCGTGTATTCCCAGCTTGG AGCTCTACGATGTTATCTTGAGGCAGTCATGCTTCGATAACTGATTGCGC TTGTTGTGGCTTCGGTTGTGTTCGTATGGCATTTGTCTGCGTCATGCGCT TATCCGAACTTCTTCTACTTTCGAAGAATGAATCGTTTCCATCATAGACA TTACGCCTTCGGGATTTCCCTCAAAGCTAAGTGGAATACGAAATGACGTC TCAAGCAGTTTCCCTTCTCGTCACTTATTTACATCTTTGCGCAGCCGATC CATCTCTTTCTTCGTTCTTTCTTTTTCTCTCCGAAACATTTTCCGTTGGC CCATCCACCTGCAGGTGGTTGCCAACAACCACCGGACGCTGCACGGACGC CTGGCGTTTGAAGGGCGGCGCCGCATGGTCGGCTGTTACGTCGGCCGCGA CGAGCTCGAGTCGCGCGCGCGCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18313:2..576+

>mRNA_P-wetherbeei_contig18313.1.1 ID=mRNA_P-wetherbeei_contig18313.1.1|Name=mRNA_P-wetherbeei_contig18313.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig18313:2..576+ (Phaeothamnion wetherbeei SAG_119_79)
TTCTACCGCTACCATGCCGCACTGTCGGCGGCGATCCGCGACCCGGCCGC
CGTCGCCTCTGTTCTTCTGCAGCCCGGCGACATGGTGGTTGCCAACAACC
ACCGGACGCTGCACGGACGCCTGGCGTTTGAAGGGCGGCGCCGCATGGTC
GGCTGTTACGTCGGCCGCGACGAGCTCGAGTCGCGCGCGCGCATC
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