mRNA_P-wetherbeei_contig183.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig183.3.1
Unique NamemRNA_P-wetherbeei_contig183.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig183.3.1 vs. uniprot
Match: A0A835Z3C2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.230e-20
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:   67 GGSGLKHEREHA---------GSVSGSLAAGVDHKILYLSPVVLRHQMERL-------------LITRGDEAMSVGWMRRHRRHLFWNVVWYATRLGIPIPLRQS 315
            GG+  +H+  HA         GS+SGSL    +  ++YLSPVVLR Q+ERL              +T G ++++V W+RRHRRHL+WN+VW+ TRLG+P+PLRQS
Sbjct:  871 GGATERHDSWHAAGGKRGGPYGSISGSLPPDSEGVVIYLSPVVLRRQLERLQLXXXXXXXXXXXXLTHGVDSLTVEWVRRHRRHLYWNIVWFTTRLGLPMPLRQS 975
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BLAST of mRNA_P-wetherbeei_contig183.3.1 vs. uniprot
Match: A0A4D9CNC4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNC4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-11
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   82 KHEREHAGSVSG--SLAAGVDHKILYLSPVVLRHQMERLLITRGDEAMSVGWMRRHRRHLFWNVVWYATRLGIPIP 303
            K  RE  G +SG  S   G DH + YLSP  LR ++E+LL+  G+  ++  W R H+  L+WN+VW+ TRL IP P
Sbjct:  175 KTAREQRGEISGLPSGTTGGDH-VGYLSPFTLRMRLEKLLLEEGEMCLTRDWARTHQPELYWNLVWFTTRLSIPFP 249
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BLAST of mRNA_P-wetherbeei_contig183.3.1 vs. uniprot
Match: W7T7D8_9STRA (UDENN n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7D8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.630e-11
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   82 KHEREHAGSVSG--SLAAGVDHKILYLSPVVLRHQMERLLITRGDEAMSVGWMRRHRRHLFWNVVWYATRLGIPIP 303
            K  RE  G +SG  S   G DH + YLSP  LR ++E+LL+  G+  ++  W R H+  L+WN+VW+ TRL IP P
Sbjct: 1435 KTAREQRGEISGLPSGTTGGDH-VGYLSPFTLRMRLEKLLLEDGEMCLTRDWARTHQPELYWNLVWFTTRLSIPFP 1509
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BLAST of mRNA_P-wetherbeei_contig183.3.1 vs. uniprot
Match: A0A7R9UGD1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGD1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.110e-10
Identity = 24/62 (38.71%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:  118 SLAAGVDHKILYLSPVVLRHQMERLLITRGDEAMSVGWMRRHRRHLFWNVVWYATRLGIPIP 303
            ++  GV +   Y+SP ++R  +ER++I +G+ A++  WM  H R ++WN VWY  RL +P+P
Sbjct:  293 TMEPGVHYSFDYMSPRMVRSSLERIVIEKGESALTAAWMLEHERDVYWNAVWYCHRLTVPVP 354
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BLAST of mRNA_P-wetherbeei_contig183.3.1 vs. uniprot
Match: A0A3N0Z5C5_ANAGA (DENN domain-containing protein 4B n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0Z5C5_ANAGA)

HSP 1 Score: 60.5 bits (145), Expect = 3.300e-8
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  106 SVSGSLAAGVDH-KILYLSPVVLRHQMERLLITRGDEAMSVGWMRRHRRHLFWNVVWYATRLGIPIPLRQ 312
            S S SLA G     + YLSP+VLR +ME LL   G+  +S   +      LFWN+VWY TRLG+P  L Q
Sbjct: 1183 SESSSLAGGAPQVTVAYLSPLVLRKEMESLLENEGEAVLSQVQLLDSHSILFWNLVWYFTRLGLPSNLSQ 1252
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BLAST of mRNA_P-wetherbeei_contig183.3.1 vs. uniprot
Match: UPI002013F43C (DENN domain-containing protein 4B-like isoform X2 n=2 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI002013F43C)

HSP 1 Score: 60.5 bits (145), Expect = 3.300e-8
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  106 SVSGSLAAGVDH-KILYLSPVVLRHQMERLLITRGDEAMSVGWMRRHRRHLFWNVVWYATRLGIPIPLRQ 312
            S S SLA G     + YLSP+VLR +ME LL   G+  +S   +      LFWN+VWY TRLG+P  L Q
Sbjct: 1225 SESSSLAGGTPQVTVAYLSPLVLRKEMESLLENEGEAVLSQVQLLDSHSILFWNLVWYFTRLGLPSNLSQ 1294
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BLAST of mRNA_P-wetherbeei_contig183.3.1 vs. uniprot
Match: A0A7S1U3S2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3S2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.200e-8
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:   85 HEREHAGSVSGSLAAGVDHKILYLSPVVLRHQMERLLITRGDEAMSVGWMRRHRRHLFWNVVWYATRLGIPIPLRQ 312
            H RE    ++G++      ++ YLSP ++RH +E L++T G+ A+    +R     L+WN+ WY  R  +P+PL Q
Sbjct:  673 HAREDPPDLAGTM------RVPYLSPHIIRHAVEHLILTLGEAALHRDKLREQEPELYWNLQWYCCRFRVPLPLYQ 742
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BLAST of mRNA_P-wetherbeei_contig183.3.1 vs. uniprot
Match: A0A8C1V5P9_CYPCA (DENN/MADD domain containing 4B n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1V5P9_CYPCA)

HSP 1 Score: 58.9 bits (141), Expect = 1.140e-7
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:  145 ILYLSPVVLRHQMERLLITRGDEAMSVGWMRRHRRHLFWNVVWYATRLGIPIPLRQSAATDVREIVIVGT 354
            + YLSP+VLR +ME LL   GD  +S   +      LFWN+VWY TRLG+P  L Q   T    + +  T
Sbjct: 1077 VAYLSPLVLRKEMESLLENEGDAVLSQVQLLDSHSILFWNLVWYFTRLGLPSNLLQLLRTSPHTLFLSHT 1146
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BLAST of mRNA_P-wetherbeei_contig183.3.1 vs. uniprot
Match: A0A8C1V5T3_CYPCA (DENN/MADD domain containing 4B n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1V5T3_CYPCA)

HSP 1 Score: 58.9 bits (141), Expect = 1.140e-7
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:  145 ILYLSPVVLRHQMERLLITRGDEAMSVGWMRRHRRHLFWNVVWYATRLGIPIPLRQSAATDVREIVIVGT 354
            + YLSP+VLR +ME LL   GD  +S   +      LFWN+VWY TRLG+P  L Q   T    + +  T
Sbjct: 1129 VAYLSPLVLRKEMESLLENEGDAVLSQVQLLDSHSILFWNLVWYFTRLGLPSNLLQLLRTSPHTLFLSHT 1198
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BLAST of mRNA_P-wetherbeei_contig183.3.1 vs. uniprot
Match: UPI0007ACF1EE (DENN domain-containing protein 4B-like isoform X1 n=2 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007ACF1EE)

HSP 1 Score: 58.5 bits (140), Expect = 1.330e-7
Identity = 29/60 (48.33%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:  145 ILYLSPVVLRHQMERLLITRGDEAMSVGWMRRHRRHLFWNVVWYATRLGIPIPLRQSAAT 324
            + YLSP+VLR +ME LL   GD  +S   +      LFWN+VWY TRLG+P  L Q   T
Sbjct:  145 VAYLSPLVLRKEMESLLENEGDAVLSQVQLLDSHSILFWNLVWYFTRLGLPSNLLQLLRT 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig183.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3C2_9STRA3.230e-2045.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CNC4_9STRA1.300e-1144.74Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7T7D8_9STRA2.630e-1144.74UDENN n=1 Tax=Nannochloropsis gaditana TaxID=72520... [more]
A0A7R9UGD1_9STRA1.110e-1038.71Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A3N0Z5C5_ANAGA3.300e-847.14DENN domain-containing protein 4B n=1 Tax=Anabaril... [more]
UPI002013F43C3.300e-847.14DENN domain-containing protein 4B-like isoform X2 ... [more]
A0A7S1U3S2_9STRA8.200e-834.21Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8C1V5P9_CYPCA1.140e-742.86DENN/MADD domain containing 4B n=1 Tax=Cyprinus ca... [more]
A0A8C1V5T3_CYPCA1.140e-742.86DENN/MADD domain containing 4B n=1 Tax=Cyprinus ca... [more]
UPI0007ACF1EE1.330e-748.33DENN domain-containing protein 4B-like isoform X1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig183contigP-wetherbeei_contig183:3879..4877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog8010.XP_010883404.1
Preferred nameDENND4B
PFAMsDENN,PPR_3,dDENN,uDENN
Model size357
Max annot lvl33208|Metazoa
KEGG koko:K20163
Hectar predicted targeting categoryother localisation
GOsGO:0002790,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005794,GO:0005829,GO:0005886,GO:0005938,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009966,GO:0009987,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022607,GO:0023051,GO:0030198,GO:0031267,GO:0031410,GO:0031982,GO:0032483,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0042886,GO:0042996,GO:0042998,GO:0043062,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044085,GO:0044093,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0045175,GO:0045177,GO:0045179,GO:0045184,GO:0046578,GO:0046903,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051049,GO:0051050,GO:0051056,GO:0051128,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051336,GO:0051345,GO:0055037,GO:0060341,GO:0060627,GO:0061864,GO:0061865,GO:0065007,GO:0065009,GO:0070201,GO:0070278,GO:0070831,GO:0071702,GO:0071705,GO:0071711,GO:0071840,GO:0071944,GO:0090087,GO:0090630,GO:0097574,GO:0097575,GO:0097708,GO:0098772,GO:0099568,GO:0099738,GO:0110010,GO:0110011,GO:1902531,GO:1903053,GO:1903076,GO:1903078,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1904951,GO:1905475,GO:1905477
Exons3
Evalue2.56e-08
EggNOG OGsKOG2127@1|root,KOG2127@2759|Eukaryota,38F94@33154|Opisthokonta,3BA52@33208|Metazoa,3CTGF@33213|Bilateria,4843G@7711|Chordata,4916G@7742|Vertebrata,49QEG@7898|Actinopterygii
DescriptionDENN MADD domain containing 4B
Cds size357
COG categoryT
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.8989115-CDS-P-wetherbeei_contig183:3878..40361683186141.8989115-CDS-P-wetherbeei_contig183:3878..4036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig183 3879..4036 +
1683186141.9132757-CDS-P-wetherbeei_contig183:4225..43911683186141.9132757-CDS-P-wetherbeei_contig183:4225..4391Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig183 4226..4391 +
1683186141.9211948-CDS-P-wetherbeei_contig183:4844..48771683186141.9211948-CDS-P-wetherbeei_contig183:4844..4877Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig183 4845..4877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig183.3.1prot_P-wetherbeei_contig183.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig183 3879..4877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig183.3.1

>prot_P-wetherbeei_contig183.3.1 ID=prot_P-wetherbeei_contig183.3.1|Name=mRNA_P-wetherbeei_contig183.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
HEAGRAGGQAAKGGGGGGRHGEGGSGLKHEREHAGSVSGSLAAGVDHKIL
YLSPVVLRHQMERLLITRGDEAMSVGWMRRHRRHLFWNVVWYATRLGIPI
PLRQSAATDVREIVIVGTD
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mRNA from alignment at P-wetherbeei_contig183:3879..4877+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig183.3.1 ID=mRNA_P-wetherbeei_contig183.3.1|Name=mRNA_P-wetherbeei_contig183.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=999bp|location=Sequence derived from alignment at P-wetherbeei_contig183:3879..4877+ (Phaeothamnion wetherbeei SAG_119_79)
CACGAAGCGGGCCGCGCAGGCGGCCAGGCGGCAAAGGGGGGCGGCGGCGG
CGGCCGGCACGGCGAGGGCGGCTCCGGGCTCAAGCACGAGCGGGAGCACG
CCGGTTCTGTCAGCGGGTCGTTGGCAGCCGGCGTGGACCACAAGATCCTG
TACCTCAGGTGGGTGCTGCGGTCCCCTTTGGCAGCTATATAAGGCAGGCG
GCGCGGCGTTTCATTGCCGGTATGCTGAGGGCTCGTACCGCAAATGCCTG
ATTATTCCATTGTGAGCACGATACTCTTACACAAGAATCATTTGTGCATC
TCCCGCCCGCCCATTTTTGTCGCTTCCGCCGCCACGTGCCGCCGCAGCCC
GGTGGTGCTACGGCACCAGATGGAGCGGCTACTGATCACACGCGGCGATG
AGGCCATGTCAGTCGGGTGGATGCGCCGCCACCGCCGTCACCTCTTCTGG
AACGTCGTGTGGTACGCTACGCGCCTCGGCATTCCCATTCCGCTGCGACA
GTCCGCCGCCACGGTGAGTGCACTACCCTGCTGGCATTAAAAGAACGCCT
GCCACTGCAGCATGCTAGTTCCGCTGCTCCGCTGCAGCCGCTGGCGGCAG
TGCGGCCGCTGTTCGATGCAATAGATGCTGCTGCGAACCGCAGCCCCAAG
ACAGCGGCCACGAGTTCTGTGCTGGGTGTGTGGTTTCAACCTCTTGCGTA
GTGTTCAGTGCCACTAGAATTGGGCACTGCCAGTCATTTTAATTGCCGCC
AAGTTGCGCTGGTTCACAGCCATCAGCAAGGATCAATGAGAACTCGCACC
TTTGCGTGATATTACATGTCCAAGTCTCTTCCGTTCTGGCAATGGTTCTT
CCGGATTGACCAATTGAAAACGACGCACTCTTCATCCTGCTCATGAACGC
CCAAAACTATCGCCGTGTTGAACCCATTCCTCTATGCCTGCTGTCCTTCC
CGCCGCCGCATTTTAGGACGTGCGAGAGATCGTCATTGTCGGGACGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig183:3879..4877+

>mRNA_P-wetherbeei_contig183.3.1 ID=mRNA_P-wetherbeei_contig183.3.1|Name=mRNA_P-wetherbeei_contig183.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig183:3879..4877+ (Phaeothamnion wetherbeei SAG_119_79)
CACGAAGCGGGCCGCGCAGGCGGCCAGGCGGCAAAGGGGGGCGGCGGCGG
CGGCCGGCACGGCGAGGGCGGCTCCGGGCTCAAGCACGAGCGGGAGCACG
CCGGTTCTGTCAGCGGGTCGTTGGCAGCCGGCGTGGACCACAAGATCCTG
TACCTCAGCCCGGTGGTGCTACGGCACCAGATGGAGCGGCTACTGATCAC
ACGCGGCGATGAGGCCATGTCAGTCGGGTGGATGCGCCGCCACCGCCGTC
ACCTCTTCTGGAACGTCGTGTGGTACGCTACGCGCCTCGGCATTCCCATT
CCGCTGCGACAGTCCGCCGCCACGGACGTGCGAGAGATCGTCATTGTCGG
GACGGAC
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