mRNA_P-wetherbeei_contig18291.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18291.1.1
Unique NamemRNA_P-wetherbeei_contig18291.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18291.1.1 vs. uniprot
Match: A0A7C9B3B5_OPUST (PRO8NT domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9B3B5_OPUST)

HSP 1 Score: 227 bits (579), Expect = 5.620e-75
Identity = 101/114 (88.60%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 GFVDAQKEDMPPAHVRKIVRDHGDMTSKKFRHDKRVYLGALKFVPHAIYKLLENMPMPWEQVRNVKVLYHVTGAISFVNEIPWVIEPVYVAQWGTMWIMMRREKRDRRHFKRMR 342
            GFV+ QKEDMPP HVRKI+RDHGDM+SKK+RHDKRVYLGALKFVPHA+YKLLENMPMPWEQVR+VKVLYH+TGAI+FVNEIPWV+EP+Y+AQWGTMWIMMRREKRDRRHFKRMR
Sbjct:   10 GFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMR 123
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BLAST of mRNA_P-wetherbeei_contig18291.1.1 vs. uniprot
Match: A0A1R3KSZ0_COCAP (Pre-mRNA-processing-splicing factor 8 (Fragment) n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3KSZ0_COCAP)

HSP 1 Score: 227 bits (578), Expect = 7.550e-74
Identity = 100/114 (87.72%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 GFVDAQKEDMPPAHVRKIVRDHGDMTSKKFRHDKRVYLGALKFVPHAIYKLLENMPMPWEQVRNVKVLYHVTGAISFVNEIPWVIEPVYVAQWGTMWIMMRREKRDRRHFKRMR 342
            GFV+ QKEDMPP HVRKI+RDHGDM+SKK+RHDKRVYLGALKF+PHA+YKLLENMPMPWEQVR+VKVLYH+TGAI+FVNEIPWV+EP+Y+AQWGTMWIMMRREKRDRRHFKRMR
Sbjct:   64 GFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMR 177
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BLAST of mRNA_P-wetherbeei_contig18291.1.1 vs. uniprot
Match: A0A6V7J0Y7_9HYME (PRO8NT domain-containing protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7J0Y7_9HYME)

HSP 1 Score: 223 bits (569), Expect = 7.460e-72
Identity = 98/114 (85.96%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 GFVDAQKEDMPPAHVRKIVRDHGDMTSKKFRHDKRVYLGALKFVPHAIYKLLENMPMPWEQVRNVKVLYHVTGAISFVNEIPWVIEPVYVAQWGTMWIMMRREKRDRRHFKRMR 342
            GFVDAQKEDMPP H+RKI+RDHGDM+S+K+RHDKRVYLGALK++PHA+ KLLENMPMPWEQ+R+V+VLYH+TGAI+FVNEIPWVIEPVY+AQWGTMWIMMRREKRDRRHFKRMR
Sbjct:   95 GFVDAQKEDMPPEHIRKIIRDHGDMSSRKYRHDKRVYLGALKYMPHAVMKLLENMPMPWEQIRDVRVLYHITGAITFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMR 208
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BLAST of mRNA_P-wetherbeei_contig18291.1.1 vs. uniprot
Match: V9IH21_APICE (Pre-mRNA-processing-splicing factor 8 n=1 Tax=Apis cerana TaxID=7461 RepID=V9IH21_APICE)

HSP 1 Score: 224 bits (572), Expect = 1.050e-71
Identity = 99/114 (86.84%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 GFVDAQKEDMPPAHVRKIVRDHGDMTSKKFRHDKRVYLGALKFVPHAIYKLLENMPMPWEQVRNVKVLYHVTGAISFVNEIPWVIEPVYVAQWGTMWIMMRREKRDRRHFKRMR 342
            GFVDAQKEDMPP H+RKI+RDHGDM+S+K+RHDKRVYLGALK++PHA+ KLLENMPMPWEQ+R+VKVLYH+TGAI+FVNEIPWVIEPVY+AQWGTMWIMMRREKRDRRHFKRMR
Sbjct:   76 GFVDAQKEDMPPEHIRKIIRDHGDMSSRKYRHDKRVYLGALKYMPHAVMKLLENMPMPWEQIRDVKVLYHITGAITFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMR 189
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BLAST of mRNA_P-wetherbeei_contig18291.1.1 vs. uniprot
Match: A0A0L8FGX8_OCTBM (PRO8NT domain-containing protein n=2 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8FGX8_OCTBM)

HSP 1 Score: 223 bits (567), Expect = 1.370e-71
Identity = 97/114 (85.09%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 GFVDAQKEDMPPAHVRKIVRDHGDMTSKKFRHDKRVYLGALKFVPHAIYKLLENMPMPWEQVRNVKVLYHVTGAISFVNEIPWVIEPVYVAQWGTMWIMMRREKRDRRHFKRMR 342
            GFVDAQKE+MPP HVRKI+RDHGDMT++KFRHDKRVYLGALK++PHA+ KLLENMPMPWEQ+R+VKVLYH+TGAI+FVNEIPWV+EP+Y+AQWG+MWIMMRREKRDRRHFKRMR
Sbjct:   91 GFVDAQKEEMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVMKLLENMPMPWEQIRDVKVLYHITGAITFVNEIPWVVEPIYIAQWGSMWIMMRREKRDRRHFKRMR 204
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BLAST of mRNA_P-wetherbeei_contig18291.1.1 vs. uniprot
Match: A0A6J0M083_RAPSA (pre-mRNA-processing-splicing factor 8A-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0M083_RAPSA)

HSP 1 Score: 228 bits (582), Expect = 2.350e-71
Identity = 102/114 (89.47%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 GFVDAQKEDMPPAHVRKIVRDHGDMTSKKFRHDKRVYLGALKFVPHAIYKLLENMPMPWEQVRNVKVLYHVTGAISFVNEIPWVIEPVYVAQWGTMWIMMRREKRDRRHFKRMR 342
            GFV+ QKEDMPP HVRKI+RDHGDMTSKKFRHDKRVYLGALKFVPHA++KLLENMPMPWEQVR+VKVLYH+TGAI+FVNEIPWV+EP+Y+AQWGTMWIMMRREKRDRRHFKRMR
Sbjct:   75 GFVETQKEDMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPHAVFKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYMAQWGTMWIMMRREKRDRRHFKRMR 188
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BLAST of mRNA_P-wetherbeei_contig18291.1.1 vs. uniprot
Match: A0A0D2MBR6_9CHLO (Putative Pre-mRNA-processing-splicing factor 8 (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MBR6_9CHLO)

HSP 1 Score: 223 bits (567), Expect = 3.470e-71
Identity = 97/114 (85.09%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 GFVDAQKEDMPPAHVRKIVRDHGDMTSKKFRHDKRVYLGALKFVPHAIYKLLENMPMPWEQVRNVKVLYHVTGAISFVNEIPWVIEPVYVAQWGTMWIMMRREKRDRRHFKRMR 342
            G+V AQK+DMPP HVRK++RDHGDM+S+KFRHDKRVYLGALK+VPHA+YKLLENMPMPWEQVR++KV+YH+TGAI+FVNE+PWVIEPVY+AQWGTMWIMMRREKRDRRHFKRMR
Sbjct:   35 GYVQAQKDDMPPEHVRKVIRDHGDMSSRKFRHDKRVYLGALKYVPHAVYKLLENMPMPWEQVRHLKVIYHITGAITFVNEVPWVIEPVYMAQWGTMWIMMRREKRDRRHFKRMR 148
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BLAST of mRNA_P-wetherbeei_contig18291.1.1 vs. uniprot
Match: A0A699YYP8_HAELA (MPN domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YYP8_HAELA)

HSP 1 Score: 225 bits (573), Expect = 4.280e-71
Identity = 100/114 (87.72%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 GFVDAQKEDMPPAHVRKIVRDHGDMTSKKFRHDKRVYLGALKFVPHAIYKLLENMPMPWEQVRNVKVLYHVTGAISFVNEIPWVIEPVYVAQWGTMWIMMRREKRDRRHFKRMR 342
            G+V+A KEDMPP HVRKI++DHGDM+S+KFRHDKRVYLGALKFVPHA+YKLLENMPMPWEQVR+VKV+YH+TGAI+FVNEIPWVIEPVY+AQWGTMWIMMRREKRDRRHFKRMR
Sbjct:   13 GYVEAPKEDMPPEHVRKIIKDHGDMSSRKFRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRHVKVIYHITGAITFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMR 126
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BLAST of mRNA_P-wetherbeei_contig18291.1.1 vs. uniprot
Match: A0A7S3Y074_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y074_HETAK)

HSP 1 Score: 222 bits (565), Expect = 8.630e-71
Identity = 102/114 (89.47%), Postives = 108/114 (94.74%), Query Frame = 1 
Query:    1 GFVDAQKEDMPPAHVRKIVRDHGDMTSKKFRHDKRVYLGALKFVPHAIYKLLENMPMPWEQVRNVKVLYHVTGAISFVNEIPWVIEPVYVAQWGTMWIMMRREKRDRRHFKRMR 342
            GFVD  KE+MPP HVRKI+RDHGDMT+KKFRHDKRVYLGALK+VPHA+YKLLENMPMPWEQVRNVKVLYHVTGAISFVNE+P V EPVY AQWGTMWIMMRREKRDRRHFKRMR
Sbjct:   37 GFVDVYKEEMPPEHVRKIIRDHGDMTAKKFRHDKRVYLGALKYVPHAVYKLLENMPMPWEQVRNVKVLYHVTGAISFVNEVPLVAEPVYAAQWGTMWIMMRREKRDRRHFKRMR 150
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BLAST of mRNA_P-wetherbeei_contig18291.1.1 vs. uniprot
Match: A0A2P8XJP4_BLAGE (Pre-mRNA-processing-splicing factor 8 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8XJP4_BLAGE)

HSP 1 Score: 224 bits (572), Expect = 1.830e-70
Identity = 99/114 (86.84%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    1 GFVDAQKEDMPPAHVRKIVRDHGDMTSKKFRHDKRVYLGALKFVPHAIYKLLENMPMPWEQVRNVKVLYHVTGAISFVNEIPWVIEPVYVAQWGTMWIMMRREKRDRRHFKRMR 342
            GFVDAQKEDMPP H+RKI+RDHGDM+S+K+RHDKRVYLGALK++PHA+ KLLENMPMPWEQ+R+VKVLYH+TGAI+FVNEIPWVIEPVY+AQWGTMWIMMRREKRDRRHFKRMR
Sbjct:  108 GFVDAQKEDMPPEHIRKIIRDHGDMSSRKYRHDKRVYLGALKYMPHAVMKLLENMPMPWEQIRDVKVLYHITGAITFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMR 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18291.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C9B3B5_OPUST5.620e-7588.60PRO8NT domain-containing protein (Fragment) n=1 Ta... [more]
A0A1R3KSZ0_COCAP7.550e-7487.72Pre-mRNA-processing-splicing factor 8 (Fragment) n... [more]
A0A6V7J0Y7_9HYME7.460e-7285.96PRO8NT domain-containing protein (Fragment) n=1 Ta... [more]
V9IH21_APICE1.050e-7186.84Pre-mRNA-processing-splicing factor 8 n=1 Tax=Apis... [more]
A0A0L8FGX8_OCTBM1.370e-7185.09PRO8NT domain-containing protein n=2 Tax=Octopus b... [more]
A0A6J0M083_RAPSA2.350e-7189.47pre-mRNA-processing-splicing factor 8A-like n=1 Ta... [more]
A0A0D2MBR6_9CHLO3.470e-7185.09Putative Pre-mRNA-processing-splicing factor 8 (Fr... [more]
A0A699YYP8_HAELA4.280e-7187.72MPN domain-containing protein n=1 Tax=Haematococcu... [more]
A0A7S3Y074_HETAK8.630e-7189.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2P8XJP4_BLAGE1.830e-7086.84Pre-mRNA-processing-splicing factor 8 n=1 Tax=Blat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18291contigP-wetherbeei_contig18291:571..1363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog13333.ERN17970
PFAMsJAB,PRO8NT,PROCN,PROCT,PRP8_domainIV,RRM_4,U5_2-snRNA_bdg,U6-snRNA_bdg
Model size342
Max annot lvl35493|Streptophyta
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0002237,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010033,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0031593,GO:0032496,GO:0032991,GO:0033993,GO:0034097,GO:0034612,GO:0034622,GO:0034641,GO:0036002,GO:0042221,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065003,GO:0070530,GO:0070887,GO:0071005,GO:0071007,GO:0071011,GO:0071013,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071356,GO:0071396,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140030,GO:0140098,GO:1901360,GO:1901363,GO:1901700,GO:1901701,GO:1902494,GO:1990904
Exons2
Evalue6.8e-63
EggNOG OGsCOG5178@1|root,KOG1795@2759|Eukaryota,37M6Q@33090|Viridiplantae,3GE28@35493|Streptophyta
Ec32 ortholog descriptionPROCT domain
Ec32 orthologEc-04_005590.5
Descriptionpre-mRNA-processing-splicing factor
Cds size315
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.7598693-CDS-P-wetherbeei_contig18291:570..7141683186141.7598693-CDS-P-wetherbeei_contig18291:570..714Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18291 571..714 -
1683186141.7707355-CDS-P-wetherbeei_contig18291:1165..13361683186141.7707355-CDS-P-wetherbeei_contig18291:1165..1336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18291 1166..1336 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.7816265-UTR-P-wetherbeei_contig18291:1336..13631683186141.7816265-UTR-P-wetherbeei_contig18291:1336..1363Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18291 1337..1363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18291.1.1prot_P-wetherbeei_contig18291.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18291 571..1336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18291.1.1

>prot_P-wetherbeei_contig18291.1.1 ID=prot_P-wetherbeei_contig18291.1.1|Name=mRNA_P-wetherbeei_contig18291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MPPAHVRKIVRDHGDMTSKKFRHDKRVYLGALKFVPHAIYKLLENMPMPW
EQVRNVKVLYHVTGAISFVNEIPWVIEPVYVAQWGTMWIMMRREKRDRRH
FKRMR
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mRNA from alignment at P-wetherbeei_contig18291:571..1363-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18291.1.1 ID=mRNA_P-wetherbeei_contig18291.1.1|Name=mRNA_P-wetherbeei_contig18291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=793bp|location=Sequence derived from alignment at P-wetherbeei_contig18291:571..1363- (Phaeothamnion wetherbeei SAG_119_79)
GGCTTCGTGGACGCGCAAAAGGAGGACATGCCGCCGGCGCACGTCCGCAA
GATCGTGCGAGACCACGGCGACATGACCAGCAAGAAGTTTCGCCACGACA
AGCGGGTGTACCTCGGCGCGCTCAAGTTCGTGCCGCACGCCATCTACAAG
CTGCTCGAGAACATGCCCATGCCATGGGAGCAGGTCCGCAACGTCAAGGT
GAGAGCAAAAGCTGGGAGGAGGAGGTACTTGGGAAAGAAGGATCTTTGTG
CGCGCAGGCCTGTTGTGCGTCTTTTTTGCTTATCCGCTAGCGTACGCTGC
TGCTGGCAAGGCTGGCTTCTGCCGTGCTTGTCTTCTTGTTGGCCTTTCGG
TTCTCATGGCTAACGTCTCGTTTCGTGGTCATTACATTTCTTTGGAGAAG
TGGTTTAAAAAGGCAAACTTTGCTGAGGATCCTCTTACGCAGCACTGCGT
CAGTAACGGTTTCTGGGGCCGGTGTCGCCGGTGGGCGGTCAGCCGTGCCG
GGGTTTTGCAAAGAAAAGCATTCAGATTGTTGCAATGGTAGACGGAAGGC
CGGTCGGTTCCTCCCTTCCACTCTTCATGACGACTACTTCTGAGCGTCTC
AATTCTTTTTTCTGCATAACGAAACAAAACGAAACGAATTTTGCCACAGG
TGCTGTACCACGTGACGGGGGCCATCTCATTCGTTAACGAGATCCCATGG
GTAATCGAGCCTGTCTACGTTGCGCAGTGGGGTACCATGTGGATCATGAT
GCGCCGCGAGAAGCGCGACCGCCGTCACTTCAAACGCATGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18291:571..1363-

>mRNA_P-wetherbeei_contig18291.1.1 ID=mRNA_P-wetherbeei_contig18291.1.1|Name=mRNA_P-wetherbeei_contig18291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig18291:571..1363- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGGCGCACGTCCGCAAGATCGTGCGAGACCACGGCGACATGAC
CAGCAAGAAGTTTCGCCACGACAAGCGGGTGTACCTCGGCGCGCTCAAGT
TCGTGCCGCACGCCATCTACAAGCTGCTCGAGAACATGCCCATGCCATGG
GAGCAGGTCCGCAACGTCAAGGTGCTGTACCACGTGACGGGGGCCATCTC
ATTCGTTAACGAGATCCCATGGGTAATCGAGCCTGTCTACGTTGCGCAGT
GGGGTACCATGTGGATCATGATGCGCCGCGAGAAGCGCGACCGCCGTCAC
TTCAAACGCATGCGC
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