mRNA_P-wetherbeei_contig18275.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18275.1.1
Unique NamemRNA_P-wetherbeei_contig18275.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18275.1.1 vs. uniprot
Match: A0A127EW29_9HYPH (Ribonuclease R n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EW29_9HYPH)

HSP 1 Score: 697 bits (1798), Expect = 3.180e-245
Identity = 362/453 (79.91%), Postives = 397/453 (87.64%), Query Frame = 1
Query:    1 VLVVAIADVAHHVRPGSALDKEALLRGNSVYFPDRVVPMLPERISNDLCSLRPGENRAALAVRMVIGADGRKRSHTFHRVLMKSAAKLNYAQAQAAIDGRADETTGPLLDPVLKPLYSAYAALKRAREERGPLDLDLPERKILLKADGTVDRVVTPERLDAHRLIEEFMILANVAAAETLEKARVPLIYRVHDEPSLEKIEALRQFLETLHISLPKGGALRAEQFNGILAKVKGQDVEKLVNEVVLRSQAQAEYSAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRAQGFGHDGLPDSQDVSALNEIGAQISAAERRAMKAERETNDRLIAHFLADKIGATFEGRISGVTRAGLFVKLDETSADGFIPARTLGSEYFRYEEAQHAMVGNRTGETHRLGDRVTVKLVEAAPVAGALRFELLSEGRIVG--QKRPP-------RPDRSPRR 1332
            +L VAIADVAH+VRPGSALD+EA+ RGNSVYFPDRVVPMLPERISNDLCSLRP E+RAALAVRM+IG DGRKRSHTFHRVLM+SAAKLNY QAQ AI GR D+ TGPLL+ VLKPLY+AY ALKRAR+ RGPLDLDLPERKILLKADGTVDRVV PERL++HRLIEEFMILANVAAAETLEKARVPLIYR HDEPSLEK EALR+FLETLHISLPKGG LR+EQFN IL + KGQDV+ LVNEVVLRSQAQAEYSA+N GHFGLNLRR           ADL+VHRGLIRA  FG D LP+SQD +AL E+ AQISA+ERRAMKAERET DRLIAHFL+DKIGATFEGRISGVTRAG+F+KLD T ADGF+PART+G+EYFRYEE  HAMVGN TGET+RLGDRVTVKLVEAAPVAGALRFELLSEG+IVG  Q+RP        RP+R P++
Sbjct:  303 ILTVAIADVAHYVRPGSALDREAVKRGNSVYFPDRVVPMLPERISNDLCSLRPREDRAALAVRMIIGPDGRKRSHTFHRVLMRSAAKLNYEQAQMAIGGRTDDDTGPLLENVLKPLYAAYEALKRARDARGPLDLDLPERKILLKADGTVDRVVVPERLESHRLIEEFMILANVAAAETLEKARVPLIYRAHDEPSLEKTEALRKFLETLHISLPKGGVLRSEQFNRILGQTKGQDVDALVNEVVLRSQAQAEYSADNIGHFGLNLRRYAHFTSPIRRYADLVVHRGLIRAGRFGSDDLPESQDHAALAEVAAQISASERRAMKAERETKDRLIAHFLSDKIGATFEGRISGVTRAGIFIKLDHTGADGFVPARTIGNEYFRYEEDMHAMVGNSTGETYRLGDRVTVKLVEAAPVAGALRFELLSEGKIVGRAQQRPSQRRSAKSRPERGPKK 755          
BLAST of mRNA_P-wetherbeei_contig18275.1.1 vs. uniprot
Match: A0A537USR1_9PROT (Exoribonuclease II (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537USR1_9PROT)

HSP 1 Score: 667 bits (1720), Expect = 5.540e-234
Identity = 351/421 (83.37%), Postives = 389/421 (92.40%), Query Frame = 1
Query:    1 VLVVAIADVAHHVRPGSALDKEALLRGNSVYFPDRVVPMLPERISNDLCSLRPGENRAALAVRMVIGADGRKRSHTFHRVLMKSAAKLNYAQAQAAIDGRADETTGPLLDPVLKPLYSAYAALKRAREERGPLDLDLPERKILLKADGTVDRVVTPERLDAHRLIEEFMILANVAAAETLEKARVPLIYRVHDEPSLEKIEALRQFLETLHISLPKGGALRAEQFNGILAKVKGQDVEKLVNEVVLRSQAQAEYSAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRAQGFGHDGLPDSQDVSALNEIGAQISAAERRAMKAERETNDRLIAHFLADKIGATFEGRISGVTRAGLFVKLDETSADGFIPARTLGSEYFRYEEAQHAMVGNRTGETHRLGDRVTVKLVEAAPVAGALRF 1263
            V+ VAIADVAH+VRPGSALD+EALLRGNSVYFPDRVVPMLPERISNDLCSLRPGE+RAALAVR+V+GADGRKRSH+FHRVLM+SAA+LNYAQAQAA+DG  DETTGPLL  VL+PLY AY A+KRAR+ R PLDLDLPERKI+L A  TVDRV+TPERLDAHRLIEEFMILANVAAAETLE+AR+PLIYRVHDEP  E++ ALR+FL++L ISLPK GALRAEQFN ILA+VKG+DVEKLVNEVVLR+QAQAEY+AENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRA  FG  GLP  QDV+AL EIGAQISAAERRAMKAERET DRL+AHFLAD+IGATFEG ISG TRAGLFVKLD+T ADGFIPART+G++YFRY E +HA++G R+GETHRLGDRVTV+LVEAAPVAGALRF
Sbjct:  302 VISVAIADVAHYVRPGSALDREALLRGNSVYFPDRVVPMLPERISNDLCSLRPGEDRAALAVRLVVGADGRKRSHSFHRVLMRSAARLNYAQAQAAVDGWPDETTGPLLASVLEPLYCAYRAVKRARDARAPLDLDLPERKIVLTAHNTVDRVMTPERLDAHRLIEEFMILANVAAAETLERARMPLIYRVHDEPDPERVNALREFLQSLDISLPKAGALRAEQFNRILARVKGRDVEKLVNEVVLRTQAQAEYAAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRALQFGDGGLPPEQDVAALGEIGAQISAAERRAMKAERETFDRLLAHFLADRIGATFEGHISGATRAGLFVKLDDTGADGFIPARTIGADYFRYHEDRHALIGARSGETHRLGDRVTVRLVEAAPVAGALRF 722          
BLAST of mRNA_P-wetherbeei_contig18275.1.1 vs. uniprot
Match: A0A537UGK7_9PROT (Ribonuclease R n=5 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537UGK7_9PROT)

HSP 1 Score: 662 bits (1708), Expect = 1.220e-231
Identity = 353/444 (79.50%), Postives = 394/444 (88.74%), Query Frame = 1
Query:    1 VLVVAIADVAHHVRPGSALDKEALLRGNSVYFPDRVVPMLPERISNDLCSLRPGENRAALAVRMVIGADGRKRSHTFHRVLMKSAAKLNYAQAQAAIDGRADETTGPLLDPVLKPLYSAYAALKRAREERGPLDLDLPERKILLKADGTVDRVVTPERLDAHRLIEEFMILANVAAAETLEKARVPLIYRVHDEPSLEKIEALRQFLETLHISLPKGGALRAEQFNGILAKVKGQDVEKLVNEVVLRSQAQAEYSAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRAQGFGHDGLPDSQDVSALNEIGAQISAAERRAMKAERETNDRLIAHFLADKIGATFEGRISGVTRAGLFVKLDETSADGFIPARTLGSEYFRYEEAQHAMVGNRTGETHRLGDRVTVKLVEAAPVAGALRFELLSEGR-IVGQKRPPRPDRSPR 1329
            ++ VAIADV+H+VRPGSALD+EAL RGNSVYFPDRVVPMLPERISNDLCSLRPGE+RAALAVR+V+GADGRKRSH+FHRVLM+SAA+LNY QAQAAIDG  DE TGPLL  VL+PLY AY ALK AR+ R PLDLDLPERKI+L A  TVDRV+TPERLDAHRLIEEFMILANVAAAETLE+A VPLIYR+HDEP  E++ ALR+FL +L ISLPKGGALRAE FN ILA+VKG+DVEKLVNEVVLR+QAQAEY+AENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRA   G  GLP  QD +A+ EIGAQISAAERRAMKAERET DRLIAHFLAD+IGATF G ISG TRAGLFVKLD+T ADGF+PART+G+EYFRY E +HA++G R+GET+RLGDRVTV+LVEAAPVAGALRFE+LSEGR     +R PR +R  R
Sbjct:  302 IISVAIADVSHYVRPGSALDREALTRGNSVYFPDRVVPMLPERISNDLCSLRPGEDRAALAVRLVVGADGRKRSHSFHRVLMRSAARLNYVQAQAAIDGWPDEATGPLLATVLEPLYLAYRALKHARDARAPLDLDLPERKIVLTAHNTVDRVMTPERLDAHRLIEEFMILANVAAAETLERAHVPLIYRLHDEPDPERVNALREFLRSLDISLPKGGALRAEHFNRILARVKGRDVEKLVNEVVLRTQAQAEYAAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRALRLGDGGLPQEQDAAAVGEIGAQISAAERRAMKAERETFDRLIAHFLADRIGATFAGHISGATRAGLFVKLDDTGADGFVPARTIGTEYFRYHEDRHALIGARSGETYRLGDRVTVRLVEAAPVAGALRFEILSEGRHTAAGRRHPRHERETR 745          
BLAST of mRNA_P-wetherbeei_contig18275.1.1 vs. uniprot
Match: A0A6N7GYP8_9HYPH (Ribonuclease R n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GYP8_9HYPH)

HSP 1 Score: 658 bits (1698), Expect = 4.000e-230
Identity = 346/440 (78.64%), Postives = 393/440 (89.32%), Query Frame = 1
Query:    1 VLVVAIADVAHHVRPGSALDKEALLRGNSVYFPDRVVPMLPERISNDLCSLRPGENRAALAVRMVIGADGRKRSHTFHRVLMKSAAKLNYAQAQAAIDGRADETTGPLLDPVLKPLYSAYAALKRAREERGPLDLDLPERKILLKADGTVDRVVTPERLDAHRLIEEFMILANVAAAETLEKARVPLIYRVHDEPSLEKIEALRQFLETLHISLPKGGALRAEQFNGILAKVKGQDVEKLVNEVVLRSQAQAEYSAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRAQGFGHDGLPDSQDVSALNEIGAQISAAERRAMKAERETNDRLIAHFLADKIGATFEGRISGVTRAGLFVKLDETSADGFIPARTLGSEYFRYEEAQHAMVGNRTGETHRLGDRVTVKLVEAAPVAGALRFELLSEGRIVGQKRPPRPDR 1320
            V+ VAIADVA +VRPGSALD EA +RGNSVYFPDRVVPMLPERISNDLCSLRP E+RAALAVRMV+GADGRKRSHTFHRVL++SAAKL+Y QAQ AIDG ADE +GPL+  VL+PLY+ Y  LKRAR+ER PLDLD+PERKI+L A  TVDRV+TPERLD+HRLIEEFMILANVAAAETLEK RVPLIYRVHDEP +E++ ALR+FL+TL ISLPK GALRAEQFN IL +VKG+DVEKLVNEVVLR+QAQAEY+AENYGHFGLNLRRXXXXXXXXXXXADL+VHRGLIRA   G  GLP+++D+ +LNE+ A ISA ERRAMKAERET DRL+AHFLAD++GATF+G ISGVTRAGLFVKLD+T ADG IPART+G+EYFRY+E QHA++GN +GET+RLGD VTVKLVEAAPVAGALRFELLSEGR   +K+  RP R
Sbjct:  297 VIHVAIADVASYVRPGSALDHEARIRGNSVYFPDRVVPMLPERISNDLCSLRPAEDRAALAVRMVVGADGRKRSHTFHRVLIRSAAKLSYQQAQRAIDGWADEVSGPLIGTVLEPLYAVYRVLKRARDERAPLDLDIPERKIVLTAHNTVDRVMTPERLDSHRLIEEFMILANVAAAETLEKVRVPLIYRVHDEPDMERVNALREFLKTLDISLPKAGALRAEQFNHILQRVKGRDVEKLVNEVVLRTQAQAEYTAENYGHFGLNLRRXXXXXXXXXXXADLVVHRGLIRAGKLGDGGLPETEDLQSLNEVSAAISATERRAMKAERETFDRLLAHFLADRVGATFQGHISGVTRAGLFVKLDDTGADGLIPARTIGNEYFRYQEDQHALIGNNSGETYRLGDAVTVKLVEAAPVAGALRFELLSEGRYDRRKQTERPPR 736          
BLAST of mRNA_P-wetherbeei_contig18275.1.1 vs. uniprot
Match: UPI0003FCFD88 (ribonuclease R n=1 Tax=Bradyrhizobium sp. Tv2a-2 TaxID=113395 RepID=UPI0003FCFD88)

HSP 1 Score: 646 bits (1667), Expect = 3.600e-225
Identity = 337/431 (78.19%), Postives = 383/431 (88.86%), Query Frame = 1
Query:   10 VAIADVAHHVRPGSALDKEALLRGNSVYFPDRVVPMLPERISNDLCSLRPGENRAALAVRMVIGADGRKRSHTFHRVLMKSAAKLNYAQAQAAIDGRADETTGPLLDPVLKPLYSAYAALKRAREERGPLDLDLPERKILLKADGTVDRVVTPERLDAHRLIEEFMILANVAAAETLEKARVPLIYRVHDEPSLEKIEALRQFLETLHISLPKGGALRAEQFNGILAKVKGQDVEKLVNEVVLRSQAQAEYSAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRAQGFGHDGLPDSQDVSALNEIGAQISAAERRAMKAERETNDRLIAHFLADKIGATFEGRISGVTRAGLFVKLDETSADGFIPARTLGSEYFRYEEAQHAMVGNRTGETHRLGDRVTVKLVEAAPVAGALRFELLSEGRIVGQKR 1302
            VAIADVA +VRPGSALD++AL+RGNSVYFPDRVVPMLPERISN+LCSL PGE R ALAVRMVIGADGRKRSH+FHR+LM+SAAKL+YAQAQAAIDGR D+TTGPLLDP+LKPLY+AYAA KRAREER PLDLD+PERKILLK DGTVDRVV P+RLDAH+LIEEFMILANVAAAE LEK  +PLIYRVHDEPS+EK++AL++FL TL +   KGG+LR   FNG+LA+V+GQD E+LVNEVVLRSQAQAEYSAENYGHFGLNLRRXXXXXXXXXXXADLIVHR LIR  G G   LPD + +  L+EI AQISA ERRAMKAERET DRLIAH LAD+IGATF+GRISGVTRAGLFVKL +T ADGFIP R+LGSEY+ Y+E +HA++G+R+G THRLGD V V+LVEA P+AGALRFELLSEG +  ++R
Sbjct:  302 VAIADVAFYVRPGSALDRDALVRGNSVYFPDRVVPMLPERISNNLCSLVPGEPRGALAVRMVIGADGRKRSHSFHRILMRSAAKLHYAQAQAAIDGRPDDTTGPLLDPILKPLYAAYAAAKRAREERDPLDLDIPERKILLKPDGTVDRVVVPQRLDAHKLIEEFMILANVAAAEMLEKKALPLIYRVHDEPSVEKVQALQEFLRTLDLPFAKGGSLRPSLFNGVLAQVQGQDYEQLVNEVVLRSQAQAEYSAENYGHFGLNLRRXXXXXXXXXXXADLIVHRALIRGLGLGEGALPDGESLETLSEIAAQISATERRAMKAERETADRLIAHHLADRIGATFQGRISGVTRAGLFVKLSDTGADGFIPIRSLGSEYYNYDETRHALIGSRSGATHRLGDVVDVRLVEAQPIAGALRFELLSEGEVAPRER 732          
BLAST of mRNA_P-wetherbeei_contig18275.1.1 vs. uniprot
Match: A0A537MZK2_9PROT (Exoribonuclease II (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MZK2_9PROT)

HSP 1 Score: 633 bits (1633), Expect = 4.030e-224
Identity = 337/427 (78.92%), Postives = 378/427 (88.52%), Query Frame = 1
Query:    1 VLVVAIADVAHHVRPGSALDKEALLRGNSVYFPDRVVPMLPERISNDLCSLRPGENRAALAVRMVIGADGRKRSHTFHRVLMKSAAKLNYAQAQAAIDGRADETTGPLLDPVLKPLYSAYAALKRAREERGPLDLDLPERKILLKADGTVDRVVTPERLDAHRLIEEFMILANVAAAETLEKARVPLIYRVHDEPSLEKIEALRQFLETLHISLPKGGALRAEQFNGILAKVKGQDVEKLVNEVVLRSQAQAEYSAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRAQGFGHDGLPDSQDVSALNEIGAQISAAERRAMKAERETNDRLIAHFLADKIGATFEGRISGVTRAGLFVKLDETSADGFIPARTLGSEYFRYEEAQHAMVGNRTGETHRLGDRVTVKLVEAAPVAGALRFELLSEG 1281
            V+ VAIADVAH+VRPGSALD+EAL+RGNSVYFPDRVVPMLPERISNDLCSL+ G +R A+AVRMVIGADGRKRSH FHRVL++SAA+L+Y Q Q AIDG ADE   PL+   ++PLY+AYAA+KRAR++R PL+LDLPERKILLK D TVDRVVTP RL++HRLIEEFMILANVAAAETLE+ARVPLIYRVHDEP+LEKI+ALR+FL TL ISL K  ALR   FN ILA+V+G DV KLV+EVVLRSQ+QAEY+AENYGHFGLNLRRXXXXXXXXXXXADLIVHR LIRA  FG DGLP+ +DV +L EIGA+ISA ERRAM AERET DRLIAHFLA+KIGATF+G I GVTRAGLFVKLD+T ADGFIPARTLGS+YFRY EA+HA+VG  TG THRLGDRV V+LVEA PVAGALRFELLSEG
Sbjct:   40 VVSVAIADVAHYVRPGSALDREALVRGNSVYFPDRVVPMLPERISNDLCSLKAGVDRPAIAVRMVIGADGRKRSHAFHRVLIRSAARLHYTQVQDAIDGAADEAIEPLVPMAIEPLYAAYAAVKRARDDRAPLELDLPERKILLKPDATVDRVVTPPRLESHRLIEEFMILANVAAAETLERARVPLIYRVHDEPALEKIQALREFLRTLDISLQKSQALRPADFNRILARVEGSDVAKLVHEVVLRSQSQAEYAAENYGHFGLNLRRXXXXXXXXXXXADLIVHRALIRALKFGRDGLPEGEDVRSLGEIGAKISATERRAMVAERETVDRLIAHFLAEKIGATFDGHIGGVTRAGLFVKLDDTGADGFIPARTLGSDYFRYREAEHALVGEATGATHRLGDRVKVRLVEAIPVAGALRFELLSEG 466          
BLAST of mRNA_P-wetherbeei_contig18275.1.1 vs. uniprot
Match: A0A537L8E9_9PROT (Ribonuclease R n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537L8E9_9PROT)

HSP 1 Score: 642 bits (1656), Expect = 8.630e-224
Identity = 342/428 (79.91%), Postives = 379/428 (88.55%), Query Frame = 1
Query:    1 VLVVAIADVAHHVRPGSALDKEALLRGNSVYFPDRVVPMLPERISNDLCSLRPGENRAALAVRMVIGADGRKRSHTFHRVLMKSAAKLNYAQAQAAIDGRADETTGPLLDPVLKPLYSAYAALKRAREERGPLDLDLPERKILLKADGTVDRVVTPERLDAHRLIEEFMILANVAAAETLEKARVPLIYRVHDEPSLEKIEALRQFLETLHISLPKGGALRAEQFNGILAKVKGQDVEKLVNEVVLRSQAQAEYSAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRAQGFGHDGLPDSQDVSALNEIGAQISAAERRAMKAERETNDRLIAHFLADKIGATFEGRISGVTRAGLFVKLDETSADGFIPARTLGSEYFRYEEAQHAMVGNRTGETHRLGDRVTVKLVEAAPVAGALRFELLSEGR 1284
            V+ VAIADVAH+V PGSALD++AL+RGNSVYFPD+VVPMLPERISNDLCSLRP E+R ALAVRMVI  +GRKRSHTFHRVLM+SAAKL+YAQAQAA DGRADE T PLL PV+ PLY+AY A    R ER PLDLDLPERKI+LK DGTVDRV+ P RLDAHRLIEEFMILANVAAAE LE+ARVPLIYRVHDEPS EKIEALR+FLETL I L KG  +R   FN ILA+VKG + E+LVNEVVLRSQAQAEYSA+NYGHFGLNLRRXXXXXXXXXXXADL+VHR LIRA   G DGLP+S DV ALNEI A+ISAAERRAMKAERET DRLIA+FLAD+IGATFEGRISGVTRAGLFVKL++T ADGF+PAR +G +YFRY EA+HA++G+ TGE++RLGD VTVKLVEAAPVAGALRFELLSEGR
Sbjct:  304 VITVAIADVAHYVTPGSALDRDALVRGNSVYFPDQVVPMLPERISNDLCSLRPNEDRGALAVRMVIDRNGRKRSHTFHRVLMRSAAKLHYAQAQAAADGRADEATAPLLSPVIAPLYAAYRARLHERAERQPLDLDLPERKIMLKPDGTVDRVIVPPRLDAHRLIEEFMILANVAAAEALERARVPLIYRVHDEPSPEKIEALREFLETLDIRLAKGQTMRPGDFNKILARVKGSEHEQLVNEVVLRSQAQAEYSADNYGHFGLNLRRXXXXXXXXXXXADLVVHRALIRAHHLGSDGLPNSVDVPALNEIAARISAAERRAMKAERETTDRLIANFLADRIGATFEGRISGVTRAGLFVKLNDTGADGFVPARVIGDDYFRYHEARHALIGDHTGESYRLGDAVTVKLVEAAPVAGALRFELLSEGR 731          
BLAST of mRNA_P-wetherbeei_contig18275.1.1 vs. uniprot
Match: A0A537NJM9_9PROT (Ribonuclease R n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NJM9_9PROT)

HSP 1 Score: 642 bits (1656), Expect = 1.050e-223
Identity = 339/425 (79.76%), Postives = 382/425 (89.88%), Query Frame = 1
Query:   10 VAIADVAHHVRPGSALDKEALLRGNSVYFPDRVVPMLPERISNDLCSLRPGENRAALAVRMVIGADGRKRSHTFHRVLMKSAAKLNYAQAQAAIDGRADETTGPLLDPVLKPLYSAYAALKRAREERGPLDLDLPERKILLKADGTVDRVVTPERLDAHRLIEEFMILANVAAAETLEKARVPLIYRVHDEPSLEKIEALRQFLETLHISLPKGGALRAEQFNGILAKVKGQDVEKLVNEVVLRSQAQAEYSAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRAQGFGHDGLPDSQDVSALNEIGAQISAAERRAMKAERETNDRLIAHFLADKIGATFEGRISGVTRAGLFVKLDETSADGFIPARTLGSEYFRYEEAQHAMVGNRTGETHRLGDRVTVKLVEAAPVAGALRFELLSEGR 1284
            VAIADVA+ VRP SALD+EA+LRGNSVYFPDRVVPMLPERISNDLCSLRPG +RAALAVRMV+GADGRKRSH+FHRVLM+S+AKL+Y QAQAAIDG  DE TGPLL  VL+PLY+AY  LKRAR++R PLDLDLPERKI+L A  TVDRVVTPERLDAHRLIEEFMILANVAAAETLE+ARVPLIYRVHDEP  E++ ALR+FL+TL IS  K GALRA QFNG+L +V+G+DVEKLVNEVVLR+QAQAEY+AENYGHFGLNLRRXXXXXXXXXXXADLIVHRG+IRA   G  GLP +QDV+AL EIGAQ+SA ERRAMKAERET DRL+AHFLAD+IGATFEG ISG TRAGLFV LD+T ADGFIPAR LG +YFR+ E +HA++G+R+GE+ RLGDRVTV+LVEAAPVAGALRFE++ EGR
Sbjct:  305 VAIADVAYFVRPDSALDREAVLRGNSVYFPDRVVPMLPERISNDLCSLRPGADRAALAVRMVVGADGRKRSHSFHRVLMRSSAKLSYVQAQAAIDGWPDEITGPLLGCVLEPLYAAYRCLKRARDDRAPLDLDLPERKIVLTAHNTVDRVVTPERLDAHRLIEEFMILANVAAAETLERARVPLIYRVHDEPEPERVNALREFLQTLDISFAKTGALRAAQFNGVLNRVRGRDVEKLVNEVVLRTQAQAEYAAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGVIRALNLGDGGLPQTQDVAALAEIGAQVSATERRAMKAERETFDRLLAHFLADRIGATFEGHISGATRAGLFVNLDDTGADGFIPARNLGPDYFRHHENRHALIGDRSGESFRLGDRVTVRLVEAAPVAGALRFEVVYEGR 729          
BLAST of mRNA_P-wetherbeei_contig18275.1.1 vs. uniprot
Match: A0A6L5FJY9_9HYPH (Ribonuclease R n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FJY9_9HYPH)

HSP 1 Score: 640 bits (1651), Expect = 4.470e-223
Identity = 341/443 (76.98%), Postives = 391/443 (88.26%), Query Frame = 1
Query:    1 VLVVAIADVAHHVRPGSALDKEALLRGNSVYFPDRVVPMLPERISNDLCSLRPGENRAALAVRMVIGADGRKRSHTFHRVLMKSAAKLNYAQAQAAIDGRADETTGPLLDPVLKPLYSAYAALKRAREERGPLDLDLPERKILLKADGTVDRVVTPERLDAHRLIEEFMILANVAAAETLEKARVPLIYRVHDEPSLEKIEALRQFLETLHISLPKGGALRAEQFNGILAKVKGQDVEKLVNEVVLRSQAQAEYSAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRAQGFGHDGLPDSQDVSALNEIGAQISAAERRAMKAERETNDRLIAHFLADKIGATFEGRISGVTRAGLFVKLDETSADGFIPARTLGSEYFRYEEAQHAMVGNRTGETHRLGDRVTVKLVEAAPVAGALRFELLSEG---RIVGQKRPPRPDR 1320
            V+ VAIADV  +VRPGSALD+EAL+RGNSVYFPDRVVPMLPERISNDLCSL+P  +RAALAVRM++GADGRKRSH+FHRVL++SAAKL+Y QAQAAIDG ADETTGPLL  VL+PLY+ Y ALKRAREER PLDLD+PERKI+L A  TVDRV+TPERLD+HRLIEEFMILANVAAAETLE+ARVPLIYRVHDEP +E++ ALR+FL+T+ +SLPK GALRA QFN ILA+VKG+DVEKLVNE+VLR+QAQAEY+AENYGHFGLNLRRXXXXXXXXXXXADLIVHR +IRA   G   LPD+ DV +L EI AQISAAERRAM+AERET DRL+AHFLAD++GA FEG ISGVTRAGLFVKLD+T ADGFIPAR +G +YFRY EA HA VG+  G T+RLGD V+V+LVEAAPVAGALRFE+LS+G   R +G+ R  RP+R
Sbjct:  292 VIDVAIADVGDYVRPGSALDREALVRGNSVYFPDRVVPMLPERISNDLCSLKPQADRAALAVRMIVGADGRKRSHSFHRVLIRSAAKLSYQQAQAAIDGWADETTGPLLGSVLEPLYATYRALKRAREERAPLDLDIPERKIVLTAHNTVDRVMTPERLDSHRLIEEFMILANVAAAETLERARVPLIYRVHDEPDMERVNALREFLQTIDLSLPKAGALRAAQFNHILARVKGRDVEKLVNEIVLRTQAQAEYAAENYGHFGLNLRRXXXXXXXXXXXADLIVHRAIIRALKLGAGVLPDNADVRSLGEIAAQISAAERRAMRAERETFDRLLAHFLADRVGAEFEGHISGVTRAGLFVKLDDTGADGFIPARMIGDDYFRYHEAAHAFVGSAKGATYRLGDAVSVRLVEAAPVAGALRFEMLSDGKAGRKLGKIRSGRPER 734          
BLAST of mRNA_P-wetherbeei_contig18275.1.1 vs. uniprot
Match: A0A1M5T3D4_9BRAD (Ribonuclease R n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A1M5T3D4_9BRAD)

HSP 1 Score: 641 bits (1653), Expect = 6.370e-223
Identity = 345/457 (75.49%), Postives = 389/457 (85.12%), Query Frame = 1
Query:   10 VAIADVAHHVRPGSALDKEALLRGNSVYFPDRVVPMLPERISNDLCSLRPGENRAALAVRMVIGADGRKRSHTFHRVLMKSAAKLNYAQAQAAIDGRADETTGPLLDPVLKPLYSAYAALKRAREERGPLDLDLPERKILLKADGTVDRVVTPERLDAHRLIEEFMILANVAAAETLEKARVPLIYRVHDEPSLEKIEALRQFLETLHISLPKGGALRAEQFNGILAKVKGQDVEKLVNEVVLRSQAQAEYSAENYGHFGLNLRRXXXXXXXXXXXADLIVHRGLIRAQGFGHDGLPDSQDVSALNEIGAQISAAERRAMKAERETNDRLIAHFLADKIGATFEGRISGVTRAGLFVKLDETSADGFIPARTLGSEYFRYEEAQHAMVGNRTGETHRLGDRVTVKLVEAAPVAGALRFELLSEGRIV--GQKRP----PR----PDRSPRREDSRPD 1350
            VAIADV  +VRPGSALD++AL RGNSVYFPDRVVPMLPERISNDLCSL PGE R ALAVRMVI  DGRKRSH+FHR+LM+SAAKLNYAQAQAAIDGR D+TTGPLL PVLKPLY AYA +KRAR+ER PLDLD+PERKILLK DGTVDRV+ PERLDAH+LIEEFMILANVAAAE LEK  +PLIYRVHDEP+LEK+ AL++FL+TL +   K GALR   FN +LA+V+G+D E LVNEVVLRSQAQAEY+AENYGHFGLNLRRXXXXXXXXXXXADLIVHR LIR  G G   LP+++ V  L E+ AQIS  ERRAMKAERET DRLIAHFLAD+IGATF+GRISGVTRAGLFVKL +T ADG IP RTLG+EYF Y+E +HA++G+R+G  HRLGD V V+LVEAAPVAGALRFELLSEG +V  G+KRP    PR    P RSPR++D +PD
Sbjct:  304 VAIADVGFYVRPGSALDRDALTRGNSVYFPDRVVPMLPERISNDLCSLVPGEPRGALAVRMVIAGDGRKRSHSFHRILMRSAAKLNYAQAQAAIDGRPDDTTGPLLAPVLKPLYDAYAVVKRARDERDPLDLDIPERKILLKPDGTVDRVIVPERLDAHKLIEEFMILANVAAAEMLEKKSLPLIYRVHDEPTLEKVHALQEFLKTLDLPFAKSGALRPSLFNRVLAQVRGRDSEPLVNEVVLRSQAQAEYAAENYGHFGLNLRRXXXXXXXXXXXADLIVHRALIRGLGLGEGALPETETVETLTEVAAQISLTERRAMKAERETADRLIAHFLADRIGATFQGRISGVTRAGLFVKLSDTGADGLIPIRTLGTEYFNYDETRHALIGSRSGAMHRLGDVVDVRLVEAAPVAGALRFELLSEGNVVPRGRKRPEDSTPRAKAHPGRSPRKKDRKPD 760          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18275.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127EW29_9HYPH3.180e-24579.91Ribonuclease R n=1 Tax=Rhodoplanes sp. Z2-YC6860 T... [more]
A0A537USR1_9PROT5.540e-23483.37Exoribonuclease II (Fragment) n=1 Tax=Alphaproteob... [more]
A0A537UGK7_9PROT1.220e-23179.50Ribonuclease R n=5 Tax=Alphaproteobacteria bacteri... [more]
A0A6N7GYP8_9HYPH4.000e-23078.64Ribonuclease R n=1 Tax=Hyphomicrobiales bacterium ... [more]
UPI0003FCFD883.600e-22578.19ribonuclease R n=1 Tax=Bradyrhizobium sp. Tv2a-2 T... [more]
A0A537MZK2_9PROT4.030e-22478.92Exoribonuclease II (Fragment) n=1 Tax=Alphaproteob... [more]
A0A537L8E9_9PROT8.630e-22479.91Ribonuclease R n=1 Tax=Alphaproteobacteria bacteri... [more]
A0A537NJM9_9PROT1.050e-22379.76Ribonuclease R n=1 Tax=Alphaproteobacteria bacteri... [more]
A0A6L5FJY9_9HYPH4.470e-22376.98Ribonuclease R n=1 Tax=Hyphomicrobiales bacterium ... [more]
A0A1M5T3D4_9BRAD6.370e-22375.49Ribonuclease R n=2 Tax=Bradyrhizobium TaxID=374 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18275contigP-wetherbeei_contig18275:1..1362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog113395.AXAI01000004_gene4513
Preferred namernr
PFAMsRNB,S1
Model size1362
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K12573
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0003674,GO:0003724,GO:0003824,GO:0004386,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008408,GO:0008997,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016896,GO:0017111,GO:0019222,GO:0019439,GO:0034458,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575
Exons1
Evalue5.9e-226
EggNOG OGsCOG0557@1|root,COG0557@2|Bacteria,1MUS6@1224|Proteobacteria,2TRC1@28211|Alphaproteobacteria,3JRHJ@41294|Bradyrhizobiaceae
Description3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
Cds size1362
COG categoryK
BRITEko00000,ko00001,ko01000,ko03016,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186141.534891-CDS-P-wetherbeei_contig18275:0..13621683186141.534891-CDS-P-wetherbeei_contig18275:0..1362Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18275 1..1362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18275.1.1prot_P-wetherbeei_contig18275.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18275 1..1362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18275.1.1

>prot_P-wetherbeei_contig18275.1.1 ID=prot_P-wetherbeei_contig18275.1.1|Name=mRNA_P-wetherbeei_contig18275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=454bp
VLVVAIADVAHHVRPGSALDKEALLRGNSVYFPDRVVPMLPERISNDLCS
LRPGENRAALAVRMVIGADGRKRSHTFHRVLMKSAAKLNYAQAQAAIDGR
ADETTGPLLDPVLKPLYSAYAALKRAREERGPLDLDLPERKILLKADGTV
DRVVTPERLDAHRLIEEFMILANVAAAETLEKARVPLIYRVHDEPSLEKI
EALRQFLETLHISLPKGGALRAEQFNGILAKVKGQDVEKLVNEVVLRSQA
QAEYSAENYGHFGLNLRRYAHFTSPIRRYADLIVHRGLIRAQGFGHDGLP
DSQDVSALNEIGAQISAAERRAMKAERETNDRLIAHFLADKIGATFEGRI
SGVTRAGLFVKLDETSADGFIPARTLGSEYFRYEEAQHAMVGNRTGETHR
LGDRVTVKLVEAAPVAGALRFELLSEGRIVGQKRPPRPDRSPRREDSRPD
RGRP
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mRNA from alignment at P-wetherbeei_contig18275:1..1362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18275.1.1 ID=mRNA_P-wetherbeei_contig18275.1.1|Name=mRNA_P-wetherbeei_contig18275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1362bp|location=Sequence derived from alignment at P-wetherbeei_contig18275:1..1362+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCTTGTTGTCGCCATCGCGGACGTTGCGCATCACGTGCGGCCGGGCTC CGCGCTCGACAAGGAAGCCTTGCTGCGCGGCAACTCGGTCTATTTCCCCG ACCGCGTGGTGCCGATGCTGCCGGAGCGCATCTCCAACGATCTGTGCTCG CTGCGCCCGGGTGAAAACCGCGCGGCGCTGGCGGTGCGCATGGTGATCGG CGCCGACGGCCGCAAGCGCTCGCACACGTTCCATCGTGTGCTGATGAAAT CGGCGGCGAAGCTCAACTACGCGCAGGCGCAGGCCGCCATCGACGGCCGC GCCGACGAAACCACCGGCCCCCTGCTCGATCCGGTGCTCAAGCCGCTCTA TTCAGCCTATGCGGCGCTCAAACGCGCGCGCGAAGAACGCGGGCCGCTCG ATCTCGATCTGCCCGAACGGAAAATCCTGCTCAAAGCCGACGGCACGGTG GACCGCGTCGTCACCCCGGAACGGCTCGACGCGCACCGGCTGATCGAGGA ATTCATGATCCTCGCCAACGTCGCCGCCGCCGAGACGCTGGAAAAGGCGC GCGTGCCGCTGATCTATCGCGTGCACGACGAGCCGTCGCTGGAGAAGATC GAGGCGCTGCGCCAGTTCCTGGAGACGCTGCACATCTCGCTGCCCAAGGG CGGCGCGCTCCGCGCCGAGCAGTTCAACGGCATCCTGGCGAAAGTGAAAG GCCAGGACGTCGAGAAGCTCGTGAACGAGGTCGTGCTCCGCTCGCAGGCG CAGGCCGAATATTCCGCCGAGAACTACGGCCACTTCGGATTGAACCTGCG CCGCTACGCGCACTTTACTTCGCCCATTCGCCGCTACGCTGACCTGATCG TGCACCGCGGCCTGATCCGCGCCCAGGGTTTCGGCCACGACGGCTTGCCG GACAGCCAGGACGTGTCCGCGCTTAACGAAATCGGCGCGCAGATTTCCGC GGCCGAACGCCGCGCGATGAAGGCCGAGCGCGAGACCAACGACCGGCTGA TCGCGCATTTCCTGGCCGACAAGATCGGCGCGACGTTCGAAGGCCGCATC TCCGGCGTGACCCGCGCCGGTCTGTTCGTAAAGCTCGACGAGACCAGCGC CGACGGCTTTATCCCAGCGCGCACGCTCGGCAGCGAATATTTCCGTTACG AGGAGGCCCAGCACGCCATGGTCGGCAACCGCACCGGCGAAACCCACAGG CTGGGCGACCGGGTGACGGTGAAACTGGTCGAAGCCGCGCCGGTCGCTGG CGCGCTACGGTTCGAACTCTTGTCGGAGGGGCGTATCGTCGGCCAGAAGC GGCCGCCGCGGCCCGACCGCTCTCCCCGCCGCGAGGATTCGAGACCGGAC CGCGGCCGGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18275:1..1362+

>mRNA_P-wetherbeei_contig18275.1.1 ID=mRNA_P-wetherbeei_contig18275.1.1|Name=mRNA_P-wetherbeei_contig18275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1362bp|location=Sequence derived from alignment at P-wetherbeei_contig18275:1..1362+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCTTGTTGTCGCCATCGCGGACGTTGCGCATCACGTGCGGCCGGGCTC
CGCGCTCGACAAGGAAGCCTTGCTGCGCGGCAACTCGGTCTATTTCCCCG
ACCGCGTGGTGCCGATGCTGCCGGAGCGCATCTCCAACGATCTGTGCTCG
CTGCGCCCGGGTGAAAACCGCGCGGCGCTGGCGGTGCGCATGGTGATCGG
CGCCGACGGCCGCAAGCGCTCGCACACGTTCCATCGTGTGCTGATGAAAT
CGGCGGCGAAGCTCAACTACGCGCAGGCGCAGGCCGCCATCGACGGCCGC
GCCGACGAAACCACCGGCCCCCTGCTCGATCCGGTGCTCAAGCCGCTCTA
TTCAGCCTATGCGGCGCTCAAACGCGCGCGCGAAGAACGCGGGCCGCTCG
ATCTCGATCTGCCCGAACGGAAAATCCTGCTCAAAGCCGACGGCACGGTG
GACCGCGTCGTCACCCCGGAACGGCTCGACGCGCACCGGCTGATCGAGGA
ATTCATGATCCTCGCCAACGTCGCCGCCGCCGAGACGCTGGAAAAGGCGC
GCGTGCCGCTGATCTATCGCGTGCACGACGAGCCGTCGCTGGAGAAGATC
GAGGCGCTGCGCCAGTTCCTGGAGACGCTGCACATCTCGCTGCCCAAGGG
CGGCGCGCTCCGCGCCGAGCAGTTCAACGGCATCCTGGCGAAAGTGAAAG
GCCAGGACGTCGAGAAGCTCGTGAACGAGGTCGTGCTCCGCTCGCAGGCG
CAGGCCGAATATTCCGCCGAGAACTACGGCCACTTCGGATTGAACCTGCG
CCGCTACGCGCACTTTACTTCGCCCATTCGCCGCTACGCTGACCTGATCG
TGCACCGCGGCCTGATCCGCGCCCAGGGTTTCGGCCACGACGGCTTGCCG
GACAGCCAGGACGTGTCCGCGCTTAACGAAATCGGCGCGCAGATTTCCGC
GGCCGAACGCCGCGCGATGAAGGCCGAGCGCGAGACCAACGACCGGCTGA
TCGCGCATTTCCTGGCCGACAAGATCGGCGCGACGTTCGAAGGCCGCATC
TCCGGCGTGACCCGCGCCGGTCTGTTCGTAAAGCTCGACGAGACCAGCGC
CGACGGCTTTATCCCAGCGCGCACGCTCGGCAGCGAATATTTCCGTTACG
AGGAGGCCCAGCACGCCATGGTCGGCAACCGCACCGGCGAAACCCACAGG
CTGGGCGACCGGGTGACGGTGAAACTGGTCGAAGCCGCGCCGGTCGCTGG
CGCGCTACGGTTCGAACTCTTGTCGGAGGGGCGTATCGTCGGCCAGAAGC
GGCCGCCGCGGCCCGACCGCTCTCCCCGCCGCGAGGATTCGAGACCGGAC
CGCGGCCGGCCC
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