mRNA_P-wetherbeei_contig18251.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18251.1.1
Unique NamemRNA_P-wetherbeei_contig18251.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18251.1.1 vs. uniprot
Match: A0A835YJ60_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ60_9STRA)

HSP 1 Score: 125 bits (314), Expect = 4.730e-28
Identity = 87/175 (49.71%), Postives = 104/175 (59.43%), Query Frame = 1
Query:   55 SRSNSLVILVRRNS-GLPAASAAVDALEDDFARFLDAEVEKVVLFFLQEQGALAKKMLEALRDLDMLGGRGGGDAXXXXXXXXXXSAGSLLIEERILPKGAHERALAAADAAFLDIGGGCVDLLRFLQLNVAALRKILKKHDKQARDRLLACNYLSSRARAKYSFLQQLYHNEGL 576
            SR  SL  ++R NS      S+ ++  EDDF+R +D EVEKVVLFFLQEQG+LA +ML A+R+   +      +A          S+ +L  EE           L         IG   V LL FLQLNV  LRKILKKHDKQ RDRLLA NYL SRAR +YSFLQQLYHNEG+
Sbjct:   51 SRRPSLTAMIRSNSFASRPVSSNMNNKEDDFSRKVDDEVEKVVLFFLQEQGSLATRML-AVREKLPVQAPINSNAMMNMADLEVNSSRALNSEE-----------LDQLHKEITAIGQDMVKLLEFLQLNVTGLRKILKKHDKQIRDRLLAANYLCSRARVRYSFLQQLYHNEGI 213          
BLAST of mRNA_P-wetherbeei_contig18251.1.1 vs. uniprot
Match: D8LS38_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS38_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 3.840e-17
Identity = 63/140 (45.00%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  163 EVEKVVLFFLQEQGALAKKMLEALRDL--DMLGGRGGGDAXXXXXXXXXXSAGSLLIEERILPKGAHERALAAADAAFLDIGGGCVDLLRFLQLNVAALRKILKKHDKQARDRLLACNYLSSRARAKYSFLQQLYHNEGL 576
            +VEKVVLFFL +QG LA+ +L+A R L     GG   G++           AG       I+ +     A+      +  IG    +L+RFLQLNV+ LRKILKKHDKQ RD+L+A NYLS+RA  KYS ++QLY+N G+
Sbjct:    5 QVEKVVLFFLSKQGELAQLLLDA-RQLRPSQKGGNSAGNSGNAFFIGN--GAGGDAATGGIIARETDRHAI------YCSIGTQIAELMRFLQLNVSGLRKILKKHDKQVRDKLIAKNYLSTRANEKYSSMRQLYNNAGV 135          
BLAST of mRNA_P-wetherbeei_contig18251.1.1 vs. uniprot
Match: A0A8K1CQA2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQA2_PYTOL)

HSP 1 Score: 80.9 bits (198), Expect = 4.660e-13
Identity = 56/151 (37.09%), Postives = 74/151 (49.01%), Query Frame = 1
Query:  127 ALEDDFARFLDAEVEKVVLFFLQEQGALAKKMLEALRDLDMLGGRGGGDAXXXXXXXXXXSAGSLLIEERILPKGAHERALAAADAAFLDIGGGCVDLLRFLQLNVAALRKILKKHDKQARDRLLACNYLSSRARAKYSFLQQLYHNEGLS 579
            A +D F R LDA+VE+VVLFFL +QG  AK +    R+ D                                   A   A+ A    F   G   V LL +++LN   +RKILKKHDK  ++R +   YLSSR  ++ S LQQLYH+EG+S
Sbjct:   48 AAQDGFQRALDAQVERVVLFFLTKQGEFAKTLAALRREQDET-------------------------------TTADLEAMHALGDRFRRTGDELVQLLHYVELNATGIRKILKKHDKMMKERKIMGAYLSSRTDSQASHLQQLYHDEGIS 167          
BLAST of mRNA_P-wetherbeei_contig18251.1.1 vs. uniprot
Match: A0A6H5JD70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD70_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.260e-13
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1
Query:  382 AAFLDIGGGCVDLLRFLQLNVAALRKILKKHDKQARDRLLACNYLSSRARAKYSFLQQLYHNEGL 576
            A +  IG    +L+RFLQLNV+ LRKILKKHDKQ RD+L+A NYLS+RA+ KYS ++QLY+N G+
Sbjct:   10 AIYCSIGRQIAELMRFLQLNVSGLRKILKKHDKQVRDKLIAKNYLSTRAKEKYSSMRQLYNNAGV 74          
BLAST of mRNA_P-wetherbeei_contig18251.1.1 vs. uniprot
Match: A0A067CJA4_SAPPC (SPX domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CJA4_SAPPC)

HSP 1 Score: 78.6 bits (192), Expect = 2.220e-12
Identity = 50/150 (33.33%), Postives = 76/150 (50.67%), Query Frame = 1
Query:  130 LEDDFARFLDAEVEKVVLFFLQEQGALAKKMLEALRDLDMLGGRGGGDAXXXXXXXXXXSAGSLLIEERILPKGAHERALAAADAAFLDIGGGCVDLLRFLQLNVAALRKILKKHDKQARDRLLACNYLSSRARAKYSFLQQLYHNEGLS 579
            L+ +F + LDAE+EK+VLFFL +QG  A+++    +                               ++ L   +  + +A+    +  IG   V LL +++LN   LRKILKKHDK  +   +  NY+S+R  A  S LQQLYH+EG+S
Sbjct:   65 LQQEFEKKLDAEIEKIVLFFLTKQGEFAQRLATYRQ------------------------------AQQSLQYASEAQTIASLADGYRKIGEELVHLLHYVELNATGLRKILKKHDKNNKAHKITDNYISTRVDANVSHLQQLYHDEGIS 184          
BLAST of mRNA_P-wetherbeei_contig18251.1.1 vs. uniprot
Match: A0A1V9ZAE3_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZAE3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.820e-12
Identity = 50/151 (33.11%), Postives = 74/151 (49.01%), Query Frame = 1
Query:  127 ALEDDFARFLDAEVEKVVLFFLQEQGALAKKMLEALRDLDMLGGRGGGDAXXXXXXXXXXSAGSLLIEERILPKGAHERALAAADAAFLDIGGGCVDLLRFLQLNVAALRKILKKHDKQARDRLLACNYLSSRARAKYSFLQQLYHNEGLS 579
            AL+ +F + LDAE+EK+VLFFL +QG  A+++ +                                  ++ L   +    +      +  IG   V LL +++LN   LRKILKKHDK  +   +  NY+S+R  A  S LQQLYH+EG+S
Sbjct:   93 ALQQEFEKKLDAEIEKIVLFFLTKQGEFAQRLKQCRET------------------------------QKSLVYNSEVETIQTLGDGYRKIGEELVHLLHYVELNATGLRKILKKHDKNNKAHKITDNYISTRVDANVSHLQQLYHDEGIS 213          
BLAST of mRNA_P-wetherbeei_contig18251.1.1 vs. uniprot
Match: A0A1V9YFP9_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YFP9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.840e-12
Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = 1
Query:  130 LEDDFARFLDAEVEKVVLFFLQEQGALAKKMLEALRDLDMLGGRGGGDAXXXXXXXXXXSAGSLLIEERILPKGAHERALAAADAAFLDIGGGCVDLLRFLQLNVAALRKILKKHDKQARDRLLACNYLSSRARAKYSFLQQLYHNEGLS 579
            L+ +F + LDAE+EK+VLFFL +QG  A+++                               S    ++ L   +  + +      +  IG   V LL +++LN   LRKILKKHDK  +   +  NY+S+R  A  S LQQLYH+EG+S
Sbjct:  102 LQQEFEKKLDAEIEKIVLFFLTKQGEFAQRLA------------------------------SFRQTQQTLASASEAQTIQGLADGYRKIGEELVHLLHYVELNATGLRKILKKHDKNNKAHKITDNYISTRVDANVSHLQQLYHDEGIS 221          
BLAST of mRNA_P-wetherbeei_contig18251.1.1 vs. uniprot
Match: A0A067BPB1_SAPPC (SPX domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BPB1_SAPPC)

HSP 1 Score: 75.5 bits (184), Expect = 3.540e-12
Identity = 49/146 (33.56%), Postives = 73/146 (50.00%), Query Frame = 1
Query:  142 FARFLDAEVEKVVLFFLQEQGALAKKMLEALRDLDMLGGRGGGDAXXXXXXXXXXSAGSLLIEERILPKGAHERALAAADAAFLDIGGGCVDLLRFLQLNVAALRKILKKHDKQARDRLLACNYLSSRARAKYSFLQQLYHNEGLS 579
            F + LDAE+EK+VLFFL +QG  A+++    +                               ++ L   +  + +A+    +  IG   V LL +++LN   LRKILKKHDK  +   +  NY+S+R  A  S LQQLYH+EG+S
Sbjct:   49 FEKKLDAEIEKIVLFFLTKQGEFAQRLATYRQ------------------------------AQQSLQYASEAQTIASLADGYRKIGEELVHLLHYVELNATGLRKILKKHDKNNKAHKITDNYISTRVDANVSHLQQLYHDEGIS 164          
BLAST of mRNA_P-wetherbeei_contig18251.1.1 vs. uniprot
Match: T0PWY1_SAPDV (SPX domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PWY1_SAPDV)

HSP 1 Score: 76.6 bits (187), Expect = 1.190e-11
Identity = 49/150 (32.67%), Postives = 74/150 (49.33%), Query Frame = 1
Query:  130 LEDDFARFLDAEVEKVVLFFLQEQGALAKKMLEALRDLDMLGGRGGGDAXXXXXXXXXXSAGSLLIEERILPKGAHERALAAADAAFLDIGGGCVDLLRFLQLNVAALRKILKKHDKQARDRLLACNYLSSRARAKYSFLQQLYHNEGLS 579
            L+ +F + LDAE+EK+VLFFL +QG  A+++    +                               ++ L   +  + +      +  IG   V LL +++LN   LRKILKKHDK  +   +  NY+S+R  A  S LQQLYH+EG+S
Sbjct:   65 LQQEFEKKLDAEIEKIVLFFLAKQGEFAQRLATYRQ------------------------------AQQSLQYASEAQTITTLADGYRKIGEELVHLLHYVELNATGLRKILKKHDKNNKAHKITDNYISTRVDANVSHLQQLYHDEGIS 184          
BLAST of mRNA_P-wetherbeei_contig18251.1.1 vs. uniprot
Match: A0A662WSU8_9STRA (SPX domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WSU8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.340e-10
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  163 EVEKVVLFFLQEQGALAKKMLEALRDLDMLGGRGGGDAXXXXXXXXXXSAGSLLIEERILPKGAHERALAAADAAFLDIGGGCVDLLRFLQLNVAALRKILKKHDKQARDRLLACNYLSSRARAKYSFLQQLYHNEGLS 579
            +VE+VVLFFL +QG  AK + E                              L  ++  L  G  E   + AD  +  +G   V LL F++LN   +RKILKKHDK  ++  +  +YLSSR  ++ S LQQLYH+EG+S
Sbjct:   40 QVERVVLFFLTQQGDFAKTLQE------------------------------LRTQQLQLAPGDMEAMHSIADM-YRRVGDDLVQLLHFVELNATGIRKILKKHDKTLKEHKIMGSYLSSRTDSQASHLQQLYHDEGIS 147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18251.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJ60_9STRA4.730e-2849.71Major facilitator superfamily domain-containing pr... [more]
D8LS38_ECTSI3.840e-1745.00SPX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8K1CQA2_PYTOL4.660e-1337.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6H5JD70_9PHAE6.260e-1361.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A067CJA4_SAPPC2.220e-1233.33SPX domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A1V9ZAE3_9STRA2.820e-1233.11Major Facilitator Superfamily (MFS) n=1 Tax=Thraus... [more]
A0A1V9YFP9_9STRA2.840e-1233.33Major Facilitator Superfamily (MFS) n=1 Tax=Achlya... [more]
A0A067BPB1_SAPPC3.540e-1233.56SPX domain-containing protein (Fragment) n=1 Tax=S... [more]
T0PWY1_SAPDV1.190e-1132.67SPX domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A662WSU8_9STRA4.340e-1035.97SPX domain-containing protein (Fragment) n=1 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18251contigP-wetherbeei_contig18251:126..1368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LS38
PFAMsMFS_1,SPX
Model size1025
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000325,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0009705,GO:0015698,GO:0016020,GO:0031090,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0098588,GO:0098805
Exons2
Evalue4.49e-19
EggNOG OGsCOG5036@1|root,KOG2325@1|root,KOG1161@2759|Eukaryota,KOG2325@2759|Eukaryota
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-12_004930.1
Descriptionmajor facilitator superfamily
Cds size660
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186140.9323711-UTR-P-wetherbeei_contig18251:125..1611683186140.9323711-UTR-P-wetherbeei_contig18251:125..161Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18251 126..161 +
1683186140.961894-UTR-P-wetherbeei_contig18251:1039..13681683186140.961894-UTR-P-wetherbeei_contig18251:1039..1368Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18251 1040..1368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186140.9430177-CDS-P-wetherbeei_contig18251:161..2991683186140.9430177-CDS-P-wetherbeei_contig18251:161..299Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18251 162..299 +
1683186140.952517-CDS-P-wetherbeei_contig18251:517..10391683186140.952517-CDS-P-wetherbeei_contig18251:517..1039Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18251 518..1039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18251.1.1prot_P-wetherbeei_contig18251.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18251 162..1039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18251.1.1

>prot_P-wetherbeei_contig18251.1.1 ID=prot_P-wetherbeei_contig18251.1.1|Name=mRNA_P-wetherbeei_contig18251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=220bp
MRERAMSRSNSLVILVRRNSGLPAASAAVDALEDDFARFLDAEVEKVVLF
FLQEQGALAKKMLEALRDLDMLGGRGGGDANGSGSGGGGGSAGSLLIEER
ILPKGAHERALAAADAAFLDIGGGCVDLLRFLQLNVAALRKILKKHDKQA
RDRLLACNYLSSRARAKYSFLQQLYHNEGLSESRSSGQERRRGEDELGSG
EGRKRGKDAAEILAWQTGP*
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mRNA from alignment at P-wetherbeei_contig18251:126..1368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18251.1.1 ID=mRNA_P-wetherbeei_contig18251.1.1|Name=mRNA_P-wetherbeei_contig18251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1243bp|location=Sequence derived from alignment at P-wetherbeei_contig18251:126..1368+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGCTGGTCTGGCGGGAGGGAGCGCGCCCCGACGATGCGGGAAAGAGC CATGTCCCGTTCAAACAGCTTAGTAATACTCGTGCGGCGCAACTCCGGCC TCCCCGCCGCGAGCGCCGCGGTCGATGCGCTCGAGGACGACTTCGCGAGA TTTCTCGACGCGGAAGTAGAGAAGGTGAGGCGGGAGGTTTTCAAGCTCCG CGGCTCATGATAGAGTTGCGGCGACGCAGATCCTGCACACACCATCCGTC GCGTGCAGCTCTTCTGTATTAATCTAAAGTCAGGCATGACTTCGCTAAAG CGGCGAAGCTTCCACCGACACGAAACAGCCCGCGGGCTTTCCGACGCACT ATTATGGTCGCGGCCCGCTCCCCTCTCTTCCCCCCCAAAAAGGTGGTGCT CTTCTTCTTGCAGGAGCAGGGAGCGCTGGCCAAGAAGATGCTGGAGGCCC TCCGCGACCTCGACATGCTGGGCGGCCGCGGCGGCGGCGACGCCAACGGC AGCGGTAGCGGCGGCGGCGGCGGCAGCGCCGGCAGCCTCCTGATCGAGGA GCGGATCTTGCCCAAAGGCGCGCACGAGAGGGCGCTCGCCGCCGCCGACG CGGCGTTCTTGGATATCGGGGGCGGCTGCGTGGACCTCCTGCGTTTCCTG CAGCTCAACGTGGCGGCGCTGCGGAAGATTTTGAAAAAGCACGACAAGCA GGCGCGGGACCGGCTGCTGGCCTGCAACTACTTGTCGAGCCGCGCCCGCG CCAAGTACAGCTTCCTGCAGCAGCTCTACCACAACGAAGGTCTGTCGGAG AGTCGGAGCAGTGGGCAAGAAAGGAGGCGAGGGGAGGATGAATTAGGCAG TGGCGAAGGAAGGAAGAGAGGAAAAGATGCGGCAGAGATTTTGGCTTGGC AGACGGGGCCATAGATGTGTCCTGACGGCAAAGTGGAAGCCATCTCCCAG AGGAATGCCACTCTCTTCTTTTATCATTGTCTGAGTCGTAAGGAAGCTCA AGGAGGCCCGGAGCTCACCTCTGTCTTGAGCGTCGCCCCATCTAATCGTA CGCCCGCGGTGCCCGCATCCAAACTGCTCCGCTGCGCCGTCATGAATCCA TTCATCTGCCGAACTGCCCGCCCCACCGACCGACCTTTCGCCGCCGCCGC CGCCCGCCGTCGCTCGCCGCCGCCCGCTTCTTCGACCAACCCTTTCCCGC CCCCGAAAAGGGCTGCTGGCGCTAGTGGCGAGCCTACGGACGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18251:126..1368+

>mRNA_P-wetherbeei_contig18251.1.1 ID=mRNA_P-wetherbeei_contig18251.1.1|Name=mRNA_P-wetherbeei_contig18251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=660bp|location=Sequence derived from alignment at P-wetherbeei_contig18251:126..1368+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGAAAGAGCCATGTCCCGTTCAAACAGCTTAGTAATACTCGTGCG
GCGCAACTCCGGCCTCCCCGCCGCGAGCGCCGCGGTCGATGCGCTCGAGG
ACGACTTCGCGAGATTTCTCGACGCGGAAGTAGAGAAGGTGGTGCTCTTC
TTCTTGCAGGAGCAGGGAGCGCTGGCCAAGAAGATGCTGGAGGCCCTCCG
CGACCTCGACATGCTGGGCGGCCGCGGCGGCGGCGACGCCAACGGCAGCG
GTAGCGGCGGCGGCGGCGGCAGCGCCGGCAGCCTCCTGATCGAGGAGCGG
ATCTTGCCCAAAGGCGCGCACGAGAGGGCGCTCGCCGCCGCCGACGCGGC
GTTCTTGGATATCGGGGGCGGCTGCGTGGACCTCCTGCGTTTCCTGCAGC
TCAACGTGGCGGCGCTGCGGAAGATTTTGAAAAAGCACGACAAGCAGGCG
CGGGACCGGCTGCTGGCCTGCAACTACTTGTCGAGCCGCGCCCGCGCCAA
GTACAGCTTCCTGCAGCAGCTCTACCACAACGAAGGTCTGTCGGAGAGTC
GGAGCAGTGGGCAAGAAAGGAGGCGAGGGGAGGATGAATTAGGCAGTGGC
GAAGGAAGGAAGAGAGGAAAAGATGCGGCAGAGATTTTGGCTTGGCAGAC
GGGGCCATAG
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