mRNA_P-wetherbeei_contig18249.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18249.1.1
Unique NamemRNA_P-wetherbeei_contig18249.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18249.1.1 vs. uniprot
Match: D7FJD4_ECTSI (Homeobox domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7FJD4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 3.730e-22
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 KRQRLPRSAVSAMRDWMQRHWDAPVPSDQQKAEFVRTLGITKRQASPIATENWFINARMRVWRPAMRKALGEAQQSGSTETFLALLSRCSHDNLFRSFLSAQEDSMGGGS 330
            KR RLP +AV  MR W+ +HWD PVP+ ++K  F     IT +Q      ENWFIN RMR WRPAMR+AL  A+++GS   F  LL   +  N+F+ FL  +E  MG GS
Sbjct:  223 KRSRLPAAAVKEMRTWLDQHWDDPVPTHEEKNSFAIKHDITTKQV-----ENWFINIRMREWRPAMRRALDHAEETGSYAEFSRLLQHTAEGNVFKKFL--EERQMGHGS 325          
BLAST of mRNA_P-wetherbeei_contig18249.1.1 vs. uniprot
Match: A0A6A2ZFB4_HIBSY (BEL1-like homeodomain protein 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZFB4_HIBSY)

HSP 1 Score: 64.3 bits (155), Expect = 1.030e-9
Identity = 38/116 (32.76%), Postives = 60/116 (51.72%), Query Frame = 1
Query:   13 LPRSAVSAMRDWMQRHWDAPVPSDQQKAEFVRTLGITKRQASPIATENWFINARMRVWRPAMRKA----LGEAQQSGSTETFLALLS------------RCSHDNLFRSFLSAQED 312
            LP  +VS +R W+  H+  P P D  K    +  G+T+ Q S     NWFINAR+R+W+P + +     + E +++GS E     L+            +CS DN+ +SF S Q++
Sbjct:  354 LPERSVSVLRSWLFEHFLHPYPKDSDKIMLAKQTGLTRSQVS-----NWFINARVRLWKPMVEEMYLEEIKEYERNGSKEKTSKSLNDEDSTSKSTAPDKCSADNMAKSFSSKQDN 464          
BLAST of mRNA_P-wetherbeei_contig18249.1.1 vs. uniprot
Match: A0A166AGC8_DAUCS (Homeobox domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166AGC8_DAUCS)

HSP 1 Score: 63.5 bits (153), Expect = 1.890e-9
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 1
Query:   13 LPRSAVSAMRDWMQRHWDAPVPSDQQKAEFVRTLGITKRQASPIATENWFINARMRVWRPAM----RKALGEAQQSGSTETFLALLSRCSHDNLFRSF 294
            LP S+VS +R W+  H+  P P D +K+   R  G+T+ Q +     NWFINAR+R+W+P +    ++  G+ +     E   +++S  ++D+  R F
Sbjct:  416 LPESSVSVLRAWLFEHFLNPYPKDSEKSMLARKAGLTRSQVA-----NWFINARVRLWKPMVEDMYKEEFGDLESDKKEEVKESVMSGATYDDHLRQF 508          
BLAST of mRNA_P-wetherbeei_contig18249.1.1 vs. uniprot
Match: UPI0010A40214 (BEL1-like homeodomain protein 7 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A40214)

HSP 1 Score: 62.8 bits (151), Expect = 3.250e-9
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   13 LPRSAVSAMRDWMQRHWDAPVPSDQQKAEFVRTLGITKRQASPIATENWFINARMRVWRPAM----RKALGEAQQSGSTET 243
            LP  +VS +R W+  H+  P P D +KA   R  G+T+ Q S     NWFINAR+R+W+P +    ++ +G+A  + S+ T
Sbjct:  157 LPEGSVSILRAWLFEHFLHPYPKDSEKAMLARQTGLTRSQVS-----NWFINARVRLWKPMIEEMYKEEIGDADLNSSSST 232          
BLAST of mRNA_P-wetherbeei_contig18249.1.1 vs. uniprot
Match: UPI0010A39636 (BEL1-like homeodomain protein 6 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A39636)

HSP 1 Score: 62.8 bits (151), Expect = 3.530e-9
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   13 LPRSAVSAMRDWMQRHWDAPVPSDQQKAEFVRTLGITKRQASPIATENWFINARMRVWRPAM----RKALGEAQQSGSTET 243
            LP  +VS +R W+  H+  P P D +KA   R  G+T+ Q S     NWFINAR+R+W+P +    ++ +G+A  + S+ T
Sbjct:  381 LPEGSVSILRAWLFEHFLHPYPKDSEKAMLARQTGLTRSQVS-----NWFINARVRLWKPMIEEMYKEEIGDADLNSSSST 456          
BLAST of mRNA_P-wetherbeei_contig18249.1.1 vs. uniprot
Match: A0A0K9PXC2_ZOSMR (BEL1-like homeodomain 7 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PXC2_ZOSMR)

HSP 1 Score: 62.4 bits (150), Expect = 4.710e-9
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 1
Query:   13 LPRSAVSAMRDWMQRHWDAPVPSDQQKAEFVRTLGITKRQASPIATENWFINARMRVWRPAMRKALGEAQQSGSTETFLALLSRCSHDNL 282
            LP ++VS +R W+  H+  P P D  K+   R  G+T+ Q S     NWFINAR+R+W+P + +   E   +G  ++ L   +  S +N+
Sbjct:  302 LPENSVSILRAWLFEHFLHPYPKDSDKSMLARQTGLTRNQVS-----NWFINARVRLWKPMVEEMYREETSNGELDSNLNSNTNFSSENV 386          
BLAST of mRNA_P-wetherbeei_contig18249.1.1 vs. uniprot
Match: UPI001CFCAF56 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFCAF56)

HSP 1 Score: 62.0 bits (149), Expect = 6.470e-9
Identity = 26/81 (32.10%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    1 KRQRLPRSAVSAMRDWMQRHWDAPVPSDQQKAEFVRTLGITKRQASPIATENWFINARMRVWRPAMRKALGEAQQSGSTET 243
            KR  +P+ A + + +W++RH+D P PS+++K E  +T  +T  Q +      WF+N+R+R+W+P +     E + S S+++
Sbjct:  135 KRFNIPKHARAVLMEWLERHFDHPYPSEEEKEELCKTTKLTMSQIN-----TWFVNSRIRIWKPKVEPGQKEEKTSSSSQS 210          
BLAST of mRNA_P-wetherbeei_contig18249.1.1 vs. uniprot
Match: A0A833RB99_9POAL (BEL1-like homeodomain protein 6-like isoform X1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RB99_9POAL)

HSP 1 Score: 62.0 bits (149), Expect = 6.500e-9
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   13 LPRSAVSAMRDWMQRHWDAPVPSDQQKAEFVRTLGITKRQASPIATENWFINARMRVWRPAM----RKALGEAQQSGSTETFLALLSR 264
            LP ++VS +R W+  H+  P PSD +K    R  G+T+ Q S     NWFINAR+R+W+P +    ++ +GEA+   ++ +  A  SR
Sbjct:  326 LPENSVSVLRAWLFEHFLHPYPSDSEKLMLARQTGLTRGQIS-----NWFINARVRLWKPMIEDMYKEEIGEAENISNSSSENAPASR 408          
BLAST of mRNA_P-wetherbeei_contig18249.1.1 vs. uniprot
Match: G7I5U5_MEDTR (BEL1-related homeotic protein n=5 Tax=Trifolieae TaxID=163742 RepID=G7I5U5_MEDTR)

HSP 1 Score: 62.0 bits (149), Expect = 6.600e-9
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   13 LPRSAVSAMRDWMQRHWDAPVPSDQQKAEFVRTLGITKRQASPIATENWFINARMRVWRPAMRKALGEAQQSGSTETFLALLS 261
            LP S+VS +R W+  H+  P P D +K    R  G+T+ Q +     NWFINAR+R+W+P + +   E  + G +ET   LLS
Sbjct:  363 LPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVA-----NWFINARVRLWKPMVEEMYKE--EFGDSETSSNLLS 438          
BLAST of mRNA_P-wetherbeei_contig18249.1.1 vs. uniprot
Match: UPI00125E6803 (BEL1-like homeodomain protein 7 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125E6803)

HSP 1 Score: 58.5 bits (140), Expect = 7.390e-9
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   13 LPRSAVSAMRDWMQRHWDAPVPSDQQKAEFVRTLGITKRQASPIATENWFINARMRVWRPAMRKALGE 216
            LP S+VS +R W+  H+  P P D  KA   R  G+T+ Q S     NWFINAR+++W+P + +   E
Sbjct:   13 LPESSVSILRAWLFEHFLHPYPKDSDKAMLARQTGLTRGQVS-----NWFINARVQLWKPMVEEIYKE 75          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18249.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJD4_ECTSI3.730e-2248.18Homeobox domain-containing protein n=3 Tax=Ectocar... [more]
A0A6A2ZFB4_HIBSY1.030e-932.76BEL1-like homeodomain protein 1 n=1 Tax=Hibiscus s... [more]
A0A166AGC8_DAUCS1.890e-932.65Homeobox domain-containing protein n=1 Tax=Daucus ... [more]
UPI0010A402143.250e-938.27BEL1-like homeodomain protein 7 n=1 Tax=Prosopis a... [more]
UPI0010A396363.530e-938.27BEL1-like homeodomain protein 6 n=1 Tax=Prosopis a... [more]
A0A0K9PXC2_ZOSMR4.710e-934.44BEL1-like homeodomain 7 n=1 Tax=Zostera marina Tax... [more]
UPI001CFCAF566.470e-932.10uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A833RB99_9POAL6.500e-937.50BEL1-like homeodomain protein 6-like isoform X1 n=... [more]
G7I5U5_MEDTR6.600e-939.76BEL1-related homeotic protein n=5 Tax=Trifolieae T... [more]
UPI00125E68037.390e-941.18BEL1-like homeodomain protein 7 n=1 Tax=Ipomoea tr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18249contigP-wetherbeei_contig18249:28..959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJD4
PFAMsHomeobox_KN
Model size330
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.11e-23
EggNOG OGsKOG0773@1|root,KOG0773@2759|Eukaryota
Ec32 ortholog descriptionOUROBOROS TALE homeobox domain transcription factor
Ec32 orthologEc-14_005920.1
DescriptionDNA binding
Cds size330
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186140.7363956-CDS-P-wetherbeei_contig18249:27..2101683186140.7363956-CDS-P-wetherbeei_contig18249:27..210Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18249 28..210 -
1683186140.7521784-CDS-P-wetherbeei_contig18249:590..7051683186140.7521784-CDS-P-wetherbeei_contig18249:590..705Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18249 591..705 -
1683186140.7619238-CDS-P-wetherbeei_contig18249:927..9591683186140.7619238-CDS-P-wetherbeei_contig18249:927..959Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18249 928..959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18249.1.1prot_P-wetherbeei_contig18249.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18249 28..959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18249.1.1

>prot_P-wetherbeei_contig18249.1.1 ID=prot_P-wetherbeei_contig18249.1.1|Name=mRNA_P-wetherbeei_contig18249.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
KRQRLPRSAVSAMRDWMQRHWDAPVPSDQQKAEFVRTLGITKRQASPIAT
ENWFINARMRVWRPAMRKALGEAQQSGSTETFLALLSRCSHDNLFRSFLS
AQEDSMGGGS
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mRNA from alignment at P-wetherbeei_contig18249:28..959-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18249.1.1 ID=mRNA_P-wetherbeei_contig18249.1.1|Name=mRNA_P-wetherbeei_contig18249.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=932bp|location=Sequence derived from alignment at P-wetherbeei_contig18249:28..959- (Phaeothamnion wetherbeei SAG_119_79)
AAGCGGCAGCGTCTTCCGCGCAGCGCCGTCAGGTAATTGAGAGGCGGCCG GCCGGGTGAAGCAATTAGAGCCAGACCGAGAAGGCTTGTCTCGCACGGAA AGAAGTTTGGAGAGCTGGACGCTGTTTCCGTCGCACTATAGTTAGGCCCG GCCTATGATTTGCCTGGCTTGACGCCTTCCGCTTTTCTATTTTCCGTATG CCTTCTATCAACTCACAATTTCTCATCCATGGACGGACTGCTGGAGCGAC GCAGCGCCATGCGCGACTGGATGCAGCGGCACTGGGACGCCCCGGTCCCT TCAGATCAGCAGAAGGCCGAGTTCGTCCGGACGCTCGGCATCACCAAGCG CCAGGCGAGTCCTATTGCTGTAAAGCGGCTGTTTTGGGCTTGAAATTTGT CGTCTGGCTGCCAATTAGCATGCCATCGTGCCCAAACGGTGTCATTCGGC TCCGTGCCGCCGGCCAAGGGCCGGCCGAGTTACAGTTATGCCCACACCTG CTGGCTTCGCCATTTTTGCCGTCTCTGCTAGAGACTGTTTGATTTTTGAG CTGGTGGTATCCGAGCGTTAACGTGACGGCCTCCGCGTTCCTTTTTTCTG GCCCGACCATGATGAAATGGCATCGGCAATGGCAACGGTAACTGTACCGG CGACCGCATGGGCGACCGCACCGGCGACAAATACGGCTGCGGCTCCGGCG CCCGCGCCGGTGCTCGAAAACGGCGAGCAAAACGGCGATTAACCTACAGA CTGAGAACTGGTTCATCAACGCGCGCATGCGGGTGTGGCGGCCTGCAATG CGCAAGGCGCTCGGGGAGGCGCAGCAGTCAGGCTCCACTGAGACTTTCCT CGCGCTTCTGTCCAGATGCTCTCACGACAACCTCTTCCGCTCTTTCCTCA GCGCGCAGGAGGACAGCATGGGCGGCGGCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18249:28..959-

>mRNA_P-wetherbeei_contig18249.1.1 ID=mRNA_P-wetherbeei_contig18249.1.1|Name=mRNA_P-wetherbeei_contig18249.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig18249:28..959- (Phaeothamnion wetherbeei SAG_119_79)
AAGCGGCAGCGTCTTCCGCGCAGCGCCGTCAGCGCCATGCGCGACTGGAT
GCAGCGGCACTGGGACGCCCCGGTCCCTTCAGATCAGCAGAAGGCCGAGT
TCGTCCGGACGCTCGGCATCACCAAGCGCCAGGCGAGTCCTATTGCTACT
GAGAACTGGTTCATCAACGCGCGCATGCGGGTGTGGCGGCCTGCAATGCG
CAAGGCGCTCGGGGAGGCGCAGCAGTCAGGCTCCACTGAGACTTTCCTCG
CGCTTCTGTCCAGATGCTCTCACGACAACCTCTTCCGCTCTTTCCTCAGC
GCGCAGGAGGACAGCATGGGCGGCGGCAGC
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