mRNA_P-wetherbeei_contig18226.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18226.1.1
Unique NamemRNA_P-wetherbeei_contig18226.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18226.1.1 vs. uniprot
Match: D7FH43_ECTSI (Exocyst complex component, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH43_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 3.680e-69
Identity = 121/187 (64.71%), Postives = 149/187 (79.68%), Query Frame = 1 
Query:    1 VRDFSGNVRTATNLGQGVVSIFARVEEMAASLARRLVSEIAETATLTAWGFREHKRNFALLIALGHADEAAVAFVRERSALIRRSLRMAEVTADPLSYVTTVSETFFGQQVFDSATAFLKLFCGSKRELERRSSRSRKSAAFFMALNGVRKCGTAPFCRLVVWVDQQIALYAALVGRQLRAVTLGAQ 561
            VRDFS N++ ATNLG+GV  IF +VE MAA +A RL++EI+   TLT WGFREHK NFALLI+LG +++AA+ FV ERSA+IRRSLR+ EVTADPLSYV  +SETFFGQ V D+ +AFLKLFC S R  ERRS ++ KS A++    GV+ CGTAPFCRLVVWV+QQI  YA L+GRQ+RA+T+G Q
Sbjct:  187 VRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAANTLTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQ-VLDAVSAFLKLFCKSARIHERRSIKTGKSTAYYQVYQGVKDCGTAPFCRLVVWVNQQIDQYAVLMGRQIRAITMGPQ 372
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BLAST of mRNA_P-wetherbeei_contig18226.1.1 vs. uniprot
Match: A0A835ZCG0_9STRA (Exo84_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCG0_9STRA)

HSP 1 Score: 208 bits (530), Expect = 5.930e-61
Identity = 109/187 (58.29%), Postives = 138/187 (73.80%), Query Frame = 1 
Query:    1 VRDFSGNVRTATNLGQGVVSIFARVEEMAASLARRLVSEIAETATLTAWGFREHKRNFALLIALGHADEAAVAFVRERSALIRRSLRMAEVTADPLSYVTTVSETFFGQQVFDSATAFLKLFCGSK-RELERRSSRSRKSAAFFMALNGVRKCGTAPFCRLVVWVDQQIALYAALVGRQLRAVTLGA 558
            V+ F+ NVR ATNLG GV  IFA+ + MAA L+ RL++EI  T T TAWGFREHK+NF LLI LG+AD AA A V+ERSALIRRSL M E TADPL+YV  +S TFFGQ + D+  AFLKLFC +   + E R++++ +S A+     G++ CG+APFCRLV+W+D Q+  YA LVGRQ+ AV LGA
Sbjct:  169 VKAFAANVRNATNLGAGVADIFAQADAMAAELSCRLITEITGTNTFTAWGFREHKKNFELLIDLGYADAAAAALVKERSALIRRSLHMVEATADPLTYVREISGTFFGQ-LMDTVAAFLKLFCSNNIAQHESRAAKTGRSPAYMQVYAGMKACGSAPFCRLVMWLDNQVDQYARLVGRQITAVGLGA 354
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BLAST of mRNA_P-wetherbeei_contig18226.1.1 vs. uniprot
Match: A0A6H5J6Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Z2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.400e-24
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:  136 LTAWGFREHKRNFALLIALGHADEAAVAFVRERSALIRRSLRMAEVTADPLSYVTTVSETFFGQQ 330
            LT WGFREHK NFALLI+LG +++AA+ FV ERSA+IRRSLR+ EVTADPLSYV  +SETFFGQ+
Sbjct:    6 LTVWGFREHKSNFALLISLGESEKAAIFFVGERSAMIRRSLRLVEVTADPLSYVGVLSETFFGQE 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18226.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FH43_ECTSI3.680e-6964.71Exocyst complex component, putative n=1 Tax=Ectoca... [more]
A0A835ZCG0_9STRA5.930e-6158.29Exo84_C domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5J6Z2_9PHAE2.400e-2473.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18226contigP-wetherbeei_contig18226:212..1356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size561
Hectar predicted targeting categoryother localisation
Exons3
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.977187-CDS-P-wetherbeei_contig18226:211..3031683186139.977187-CDS-P-wetherbeei_contig18226:211..303Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18226 212..303 +
1683186139.9873598-CDS-P-wetherbeei_contig18226:536..7711683186139.9873598-CDS-P-wetherbeei_contig18226:536..771Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18226 537..771 +
1683186139.996269-CDS-P-wetherbeei_contig18226:1122..13561683186139.996269-CDS-P-wetherbeei_contig18226:1122..1356Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18226 1123..1356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18226.1.1prot_P-wetherbeei_contig18226.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18226 212..1356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18226.1.1

>prot_P-wetherbeei_contig18226.1.1 ID=prot_P-wetherbeei_contig18226.1.1|Name=mRNA_P-wetherbeei_contig18226.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=187bp
VRDFSGNVRTATNLGQGVVSIFARVEEMAASLARRLVSEIAETATLTAWG
FREHKRNFALLIALGHADEAAVAFVRERSALIRRSLRMAEVTADPLSYVT
TVSETFFGQQVFDSATAFLKLFCGSKRELERRSSRSRKSAAFFMALNGVR
KCGTAPFCRLVVWVDQQIALYAALVGRQLRAVTLGAQ
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mRNA from alignment at P-wetherbeei_contig18226:212..1356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18226.1.1 ID=mRNA_P-wetherbeei_contig18226.1.1|Name=mRNA_P-wetherbeei_contig18226.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1145bp|location=Sequence derived from alignment at P-wetherbeei_contig18226:212..1356+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCGAGACTTTTCCGGGAACGTGCGCACCGCTACCAACCTGGGGCAAGG
CGTCGTGAGCATCTTCGCGCGCGTCGAGGAGATGGCCGCCAGGTGAGCAA
GGAGGGCCGTGTGAAAAGTTCTAATTTGTTAAGCCATTCGTTTTGCATTG
CATTGGGCCGCAGTTGGAAACGTCAAGCGCCATTCTCATTTCCTTTAGTC
GCCGTGACCGCGAAGACTCTCGAACTGCCTGCCTGTAACCGCCGCAACGG
CTCCAACCGTCCGTTTTCCCGCCATCCTCGTCCTGTCGCCCATCCCGCGC
TCCGCTCCGCCTGCAATCAATGCAGCCTGGCGCGGCGGCTCGTCTCGGAG
ATTGCCGAGACGGCGACACTGACGGCGTGGGGCTTCCGCGAGCACAAGCG
CAACTTCGCGCTGCTCATCGCGCTGGGACATGCCGACGAGGCGGCCGTGG
CCTTCGTGCGGGAGCGGAGCGCGCTGATCCGGCGGTCACTGCGCATGGCG
GAGGTGACCGCGGACCCGCTTTCGTATGTCACGACGGTCTCTGAGACCTT
CTTTGGGCAGGTGCGGCTCGCTCGGTCGGGTGGTTGGGTGGTAGGGTCCG
TTTGTCGGGCCTTTGTTAACATCGTGCTGCTTTTTGTGTTGGACTGGTTC
CGGGGCTCTCTTGCGCAGCCTTTTGCAGCTGCTGCCACTGGGCAGGCCGT
ATGGCTGCAGCTGCGACCTTCCATGATATGCAGTGCTGTTCCATCGGGAG
GGGCGCCGGCCATCTTCCATAATTCGCTTTGCTGCTGTTTGCGCCACGCC
ACCCCGCTGTCGCCGCCGGCCGGTGTCCGCGCTCGCTTTCACTCATCTGC
TCCTGCGTCTGTTTCCACTTCGGCTCTCTGTCCGCGCCTTTTCGTCCGCC
GGCGATCGGAGCAGGTATTTGACTCGGCCACGGCCTTCCTCAAGCTCTTC
TGCGGCAGCAAGCGCGAGCTTGAGCGGCGCTCCTCGCGCTCCCGCAAGTC
GGCGGCCTTCTTCATGGCGCTCAACGGCGTGCGCAAGTGCGGCACGGCGC
CGTTCTGCCGGCTTGTCGTATGGGTCGACCAGCAGATCGCGCTCTACGCC
GCGCTCGTCGGCCGCCAGCTGCGCGCCGTCACGCTCGGGGCGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18226:212..1356+

>mRNA_P-wetherbeei_contig18226.1.1 ID=mRNA_P-wetherbeei_contig18226.1.1|Name=mRNA_P-wetherbeei_contig18226.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig18226:212..1356+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCGAGACTTTTCCGGGAACGTGCGCACCGCTACCAACCTGGGGCAAGG
CGTCGTGAGCATCTTCGCGCGCGTCGAGGAGATGGCCGCCAGCCTGGCGC
GGCGGCTCGTCTCGGAGATTGCCGAGACGGCGACACTGACGGCGTGGGGC
TTCCGCGAGCACAAGCGCAACTTCGCGCTGCTCATCGCGCTGGGACATGC
CGACGAGGCGGCCGTGGCCTTCGTGCGGGAGCGGAGCGCGCTGATCCGGC
GGTCACTGCGCATGGCGGAGGTGACCGCGGACCCGCTTTCGTATGTCACG
ACGGTCTCTGAGACCTTCTTTGGGCAGCAGGTATTTGACTCGGCCACGGC
CTTCCTCAAGCTCTTCTGCGGCAGCAAGCGCGAGCTTGAGCGGCGCTCCT
CGCGCTCCCGCAAGTCGGCGGCCTTCTTCATGGCGCTCAACGGCGTGCGC
AAGTGCGGCACGGCGCCGTTCTGCCGGCTTGTCGTATGGGTCGACCAGCA
GATCGCGCTCTACGCCGCGCTCGTCGGCCGCCAGCTGCGCGCCGTCACGC
TCGGGGCGCAG
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