mRNA_P-wetherbeei_contig182.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig182.7.1
Unique NamemRNA_P-wetherbeei_contig182.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig182.7.1 vs. uniprot
Match: A0A482RQ71_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQ71_9ARCH)

HSP 1 Score: 51.2 bits (121), Expect = 1.160e-7
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 GEQLLLECDVYSQCPAPVSQLAVQFNKNAFGIAPAQP 111
            G   +LE D+ +  P PVSQLA+QFNKNAFG+AP  P
Sbjct:   11 GGNAVLEMDIGNSLPTPVSQLAIQFNKNAFGLAPTNP 47
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig182.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A482RQ71_9ARCH1.160e-759.46Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig182contigP-wetherbeei_contig182:11216..11326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDW2
PFAMsAdaptin_N,Alpha_adaptinC2,B2-adapt-app_C
Model size111
Max annot lvl2759|Eukaryota
KEGG koko:K11825,ko:K12392
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,map04142,map04144,map04721,map04961,map05016
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000278,GO:0000281,GO:0000910,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005886,GO:0005905,GO:0005911,GO:0006950,GO:0006970,GO:0006971,GO:0006996,GO:0007033,GO:0007049,GO:0007154,GO:0008150,GO:0009267,GO:0009506,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0012505,GO:0012506,GO:0012510,GO:0016020,GO:0016043,GO:0016050,GO:0022402,GO:0030054,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030587,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031152,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032502,GO:0032991,GO:0033298,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044764,GO:0045334,GO:0048475,GO:0048856,GO:0050896,GO:0051301,GO:0051703,GO:0051704,GO:0051716,GO:0055044,GO:0061640,GO:0071496,GO:0071840,GO:0071944,GO:0090702,GO:0097708,GO:0098588,GO:0098630,GO:0098743,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1903047
Exons1
Evalue0.00014
EggNOG OGsCOG5096@1|root,KOG1061@2759|Eukaryota
Descriptionclathrin binding
Cds size111
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.0014975-CDS-P-wetherbeei_contig182:11215..113261683186139.0014975-CDS-P-wetherbeei_contig182:11215..11326Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig182 11216..11326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig182.7.1prot_P-wetherbeei_contig182.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig182 11216..11326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig182.7.1

>prot_P-wetherbeei_contig182.7.1 ID=prot_P-wetherbeei_contig182.7.1|Name=mRNA_P-wetherbeei_contig182.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=37bp
GEQLLLECDVYSQCPAPVSQLAVQFNKNAFGIAPAQP
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mRNA from alignment at P-wetherbeei_contig182:11216..11326-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig182.7.1 ID=mRNA_P-wetherbeei_contig182.7.1|Name=mRNA_P-wetherbeei_contig182.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=111bp|location=Sequence derived from alignment at P-wetherbeei_contig182:11216..11326- (Phaeothamnion wetherbeei SAG_119_79)
GGGGAACAGCTCCTGCTGGAGTGCGACGTGTACAGCCAGTGCCCGGCGCC
CGTCTCGCAGCTGGCGGTGCAGTTCAACAAGAACGCCTTCGGCATCGCGC
CCGCGCAGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig182:11216..11326-

>mRNA_P-wetherbeei_contig182.7.1 ID=mRNA_P-wetherbeei_contig182.7.1|Name=mRNA_P-wetherbeei_contig182.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=111bp|location=Sequence derived from alignment at P-wetherbeei_contig182:11216..11326- (Phaeothamnion wetherbeei SAG_119_79)
GGGGAACAGCTCCTGCTGGAGTGCGACGTGTACAGCCAGTGCCCGGCGCC
CGTCTCGCAGCTGGCGGTGCAGTTCAACAAGAACGCCTTCGGCATCGCGC
CCGCGCAGCCC
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